Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01922 ATGGAGTCCTGGAATTATGGTTCTCAAGGGAAGGGATTTCTGTCTGATGAGATGAATTCATCTACTAATTCACCACTGAGAAGTAAATATTCTTTGTTGGGTTGGGAATTCAAGAACCCATGTAGTTTTGGGGACAACATGCTTCTTACAAGTGGTGCTCAGCATGTGGAGAATCAGAGCTTTGGGGAACTGGAATTTCCCCAAATGGTTGGAAAACAATTACCTGATGATTCTGTCAGTGATGTCTTGAATACTAAAACTGATGGAGGGAGAAACTTGAATCTGGTTTTTCCCACCTCTCATCCACATCATGGAGAAGAAGAGTCCACTTCGAAACTCTCTGGCTCCATTGTAGACTCTAACAATCGAGATTCATCTCTTATTGATTTGAAGCTAGGCAGATTCATTGATCAAGGGGATGCTCACAGTTCCAAATACTCCAAGAGAGCTGCAATTTCATCTTCCACTGAATCATCAACTTCTCATAAGAAAATGCGATCTCAAGGTGTGAATTTCCAGACTGCGTTTTGCCAAGTCTATGGTTGTAACAAAGATCTCAGCTCCTCTAAAGACTACCACAAGAGGCATAAAGTTTGTGAGGTTCATTCAAAGACTGCCAAAGTTATTGTGAATGGCATAGAACAGAGGTTTTGTCAGCAATGCAGCAGGTTTCATTTGCTTGTTGAATTTGATGATGGTAAACGCAGCTGTCGAAAACGGCTTGCAGGCCATAATGAACGAAGAAGAAAGCCTCAAGTCAGTTTTCACTCAGGAAGGGCACAGAGGTTGCTTCAGCCTTATAATGGTATTGGGGACGGCAGATTTCAGGAGAAAACGTTGACTGCAACTTCATTTATCTGCAAAGATATACTGTCCAGTGGTCTGTATTATCCAGAGAAGCTTGGAGAAAACGATTGGTGTAAGCGTATAAAAGTTGAGGGCAAGAGTGATTATAATTCTATATCTGCAACTTCACTGAGCAACAGGCATTTGAATGTGAAATCTCCCTTGCTTCCCTATGATTTTGAAGTACAGCTTCCTCCTTTCCAAGAAAATGGAACTAGTACAGCACCTACAGTAAACATGTTAAGTGAGACAACTTGCCAATATTCACATAATGTGGGAGGTCCCCATATTGATACACATCCTTTGTTCCACCAAACTACCTTATCAAGCGAAGAATTTGGAGTTTATGATGCAGCATCAACCATCCAAGGACTTTCTGGAATTCCAGACTCTGGTTGTGCTCTCTCTCTTCTGTCATCTCAATCACAAAGTGCATCGAACCATCCATCCATAGTTCACATTCCTCGTGCTTTCATCATGTCCGAGAGTCAATCGAATTATAGCATGAGCGAACTCTCCGAAAAGCTCATGGGAGTGAGCCCACAGGCTTCTTCAACTGGGATTACGAGTAAATTTGCCTCGGGGATGGGTGAAGCTCAAATGGGTCCCATACCGACGTGTGAAAGTAGTGATCGTACTGTCACCTTTCAGATTCCTGGTAGGGTTCTTCATAGATCAGGTTTGGCAAATCCTAAAGCTAACATTTCCTATGAACGCACTCCAACTATTGACTTGCTACAACTTTCATCACAACTCCAGCGAGTGGAACATCAGAGGCACTCCATGCAGGATCAATGA 1644 42.4 MESWNYGSQGKGFLSDEMNSSTNSPLRSKYSLLGWEFKNPCSFGDNMLLTSGAQHVENQSFGELEFPQMVGKQLPDDSVSDVLNTKTDGGRNLNLVFPTSHPHHGEEESTSKLSGSIVDSNNRDSSLIDLKLGRFIDQGDAHSSKYSKRAAISSSTESSTSHKKMRSQGVNFQTAFCQVYGCNKDLSSSKDYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLVEFDDGKRSCRKRLAGHNERRRKPQVSFHSGRAQRLLQPYNGIGDGRFQEKTLTATSFICKDILSSGLYYPEKLGENDWCKRIKVEGKSDYNSISATSLSNRHLNVKSPLLPYDFEVQLPPFQENGTSTAPTVNMLSETTCQYSHNVGGPHIDTHPLFHQTTLSSEEFGVYDAASTIQGLSGIPDSGCALSLLSSQSQSASNHPSIVHIPRAFIMSESQSNYSMSELSEKLMGVSPQASSTGITSKFASGMGEAQMGPIPTCESSDRTVTFQIPGRVLHRSGLANPKANISYERTPTIDLLQLSSQLQRVEHQRHSMQDQ 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25258035 25263945 + MELO3C002048.2.1 Cme12g01922 345139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01922 547 Pfam SBP domain 177 250 IPR004333 GO:0003677
Cme12g01922 547 Gene3D - 169 238 IPR036893 GO:0003677|GO:0005634
Cme12g01922 547 SUPERFAMILY SBT domain 175 255 IPR036893 GO:0003677|GO:0005634
Cme12g01922 547 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 44 546 IPR044817 GO:0003677
Cme12g01922 547 MobiDBLite consensus disorder prediction 147 165 - -
Cme12g01922 547 MobiDBLite consensus disorder prediction 1 22 - -
Cme12g01922 547 MobiDBLite consensus disorder prediction 146 165 - -
Cme12g01922 547 Coils Coil 527 547 - -
Cme12g01922 547 PANTHER 1 PROTEIN, PUTATIVE-RELATED 44 546 - -
Cme12g01922 547 ProSiteProfiles Zinc finger SBP-type profile. 174 251 IPR004333 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g02326 Cme-Chr11:30336669 Cme12g01922 Cme-Chr12:25258035 2.37E-37 dispersed
Cme12g01579 Cme-Chr12:23147562 Cme12g01922 Cme-Chr12:25258035 1.03E-34 dispersed
Cme11g02227 Cme-Chr11:29499556 Cme12g01922 Cme-Chr12:25258035 1.63E-34 transposed
Cme12g01922 Cme-Chr12:25258035 Cme02g01810 Cme-Chr2:24881083 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42383 PF03110 SBP 3.00E-31 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01922 - - csv:101206747 1063.14