Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01922 ATGGAGTCCTGGAATTATGGTTCTCAAGGGAAGGGATTTCTGTCTGATGAGATGAATTCATCTACTAATTCACCACTGAGAAGTAAATATTCTTTGTTGGGTTGGGAATTCAAGAACCCATGTAGTTTTGGGGACAACATGCTTCTTACAAGTGGTGCTCAGCATGTGGAGAATCAGAGCTTTGGGGAACTGGAATTTCCCCAAATGGTTGGAAAACAATTACCTGATGATTCTGTCAGTGATGTCTTGAATACTAAAACTGATGGAGGGAGAAACTTGAATCTGGTTTTTCCCACCTCTCATCCACATCATGGAGAAGAAGAGTCCACTTCGAAACTCTCTGGCTCCATTGTAGACTCTAACAATCGAGATTCATCTCTTATTGATTTGAAGCTAGGCAGATTCATTGATCAAGGGGATGCTCACAGTTCCAAATACTCCAAGAGAGCTGCAATTTCATCTTCCACTGAATCATCAACTTCTCATAAGAAAATGCGATCTCAAGGTGTGAATTTCCAGACTGCGTTTTGCCAAGTCTATGGTTGTAACAAAGATCTCAGCTCCTCTAAAGACTACCACAAGAGGCATAAAGTTTGTGAGGTTCATTCAAAGACTGCCAAAGTTATTGTGAATGGCATAGAACAGAGGTTTTGTCAGCAATGCAGCAGGTTTCATTTGCTTGTTGAATTTGATGATGGTAAACGCAGCTGTCGAAAACGGCTTGCAGGCCATAATGAACGAAGAAGAAAGCCTCAAGTCAGTTTTCACTCAGGAAGGGCACAGAGGTTGCTTCAGCCTTATAATGGTATTGGGGACGGCAGATTTCAGGAGAAAACGTTGACTGCAACTTCATTTATCTGCAAAGATATACTGTCCAGTGGTCTGTATTATCCAGAGAAGCTTGGAGAAAACGATTGGTGTAAGCGTATAAAAGTTGAGGGCAAGAGTGATTATAATTCTATATCTGCAACTTCACTGAGCAACAGGCATTTGAATGTGAAATCTCCCTTGCTTCCCTATGATTTTGAAGTACAGCTTCCTCCTTTCCAAGAAAATGGAACTAGTACAGCACCTACAGTAAACATGTTAAGTGAGACAACTTGCCAATATTCACATAATGTGGGAGGTCCCCATATTGATACACATCCTTTGTTCCACCAAACTACCTTATCAAGCGAAGAATTTGGAGTTTATGATGCAGCATCAACCATCCAAGGACTTTCTGGAATTCCAGACTCTGGTTGTGCTCTCTCTCTTCTGTCATCTCAATCACAAAGTGCATCGAACCATCCATCCATAGTTCACATTCCTCGTGCTTTCATCATGTCCGAGAGTCAATCGAATTATAGCATGAGCGAACTCTCCGAAAAGCTCATGGGAGTGAGCCCACAGGCTTCTTCAACTGGGATTACGAGTAAATTTGCCTCGGGGATGGGTGAAGCTCAAATGGGTCCCATACCGACGTGTGAAAGTAGTGATCGTACTGTCACCTTTCAGATTCCTGGTAGGGTTCTTCATAGATCAGGTTTGGCAAATCCTAAAGCTAACATTTCCTATGAACGCACTCCAACTATTGACTTGCTACAACTTTCATCACAACTCCAGCGAGTGGAACATCAGAGGCACTCCATGCAGGATCAATGA 1644 42.4 MESWNYGSQGKGFLSDEMNSSTNSPLRSKYSLLGWEFKNPCSFGDNMLLTSGAQHVENQSFGELEFPQMVGKQLPDDSVSDVLNTKTDGGRNLNLVFPTSHPHHGEEESTSKLSGSIVDSNNRDSSLIDLKLGRFIDQGDAHSSKYSKRAAISSSTESSTSHKKMRSQGVNFQTAFCQVYGCNKDLSSSKDYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLVEFDDGKRSCRKRLAGHNERRRKPQVSFHSGRAQRLLQPYNGIGDGRFQEKTLTATSFICKDILSSGLYYPEKLGENDWCKRIKVEGKSDYNSISATSLSNRHLNVKSPLLPYDFEVQLPPFQENGTSTAPTVNMLSETTCQYSHNVGGPHIDTHPLFHQTTLSSEEFGVYDAASTIQGLSGIPDSGCALSLLSSQSQSASNHPSIVHIPRAFIMSESQSNYSMSELSEKLMGVSPQASSTGITSKFASGMGEAQMGPIPTCESSDRTVTFQIPGRVLHRSGLANPKANISYERTPTIDLLQLSSQLQRVEHQRHSMQDQ 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25258035 25263945 + MELO3C002048.2.1 Cme12g01922 345139

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01922 547 Pfam SBP domain 177 250 IPR004333 GO:0003677
Cme12g01922 547 Gene3D - 169 238 IPR036893 GO:0003677|GO:0005634
Cme12g01922 547 SUPERFAMILY SBT domain 175 255 IPR036893 GO:0003677|GO:0005634
Cme12g01922 547 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 44 546 IPR044817 GO:0003677
Cme12g01922 547 MobiDBLite consensus disorder prediction 147 165 - -
Cme12g01922 547 MobiDBLite consensus disorder prediction 1 22 - -
Cme12g01922 547 MobiDBLite consensus disorder prediction 146 165 - -
Cme12g01922 547 Coils Coil 527 547 - -
Cme12g01922 547 PANTHER 1 PROTEIN, PUTATIVE-RELATED 44 546 - -
Cme12g01922 547 ProSiteProfiles Zinc finger SBP-type profile. 174 251 IPR004333 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01922 - - - csv:101206747 1063.14
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g02326 Cme-Chr11:30336669 Cme12g01922 Cme-Chr12:25258035 2.37E-37 dispersed
Cme12g01579 Cme-Chr12:23147562 Cme12g01922 Cme-Chr12:25258035 1.03E-34 dispersed
Cme11g02227 Cme-Chr11:29499556 Cme12g01922 Cme-Chr12:25258035 1.63E-34 transposed
Cme12g01922 Cme-Chr12:25258035 Cme02g01810 Cme-Chr2:24881083 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme04g01038 . 181 985 SBP-box Gene Family AT2G47070 53.2 1.3e-223 773.1
Cme04g01038 . 25 985 SBP-box Gene Family AT3G60030 53.1 6.4e-260 894.0
Cme12g01579 . 56 191 SBP-box Gene Family AT5G50570 66.4 5.3e-45 178.7
Cme11g02326 . 15 163 SBP-box Gene Family AT5G50570 55.9 1.3e-40 164.1
Cme12g01922 . 121 279 SBP-box Gene Family AT1G69170 54.1 2.3e-41 166.8
Cme04g01038 . 181 985 SBP-box Gene Family AT2G47070 53.2 1.3e-223 773.1
Cme12g01922 . 121 279 SBP-box Gene Family AT1G69170 54.1 2.3e-41 166.8
Cme04g01038 . 25 985 SBP-box Gene Family AT3G60030 53.1 6.4e-260 894.0
Cme12g01579 . 56 191 SBP-box Gene Family AT5G50570 66.4 5.3e-45 178.7
Cme11g02326 . 15 163 SBP-box Gene Family AT5G50570 55.9 1.3e-40 164.1
Cme12g01579 . 56 191 SBP-box Gene Family AT5G50670 66.4 5.3e-45 178.7
Cme11g02326 . 15 163 SBP-box Gene Family AT5G50670 55.9 1.3e-40 164.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001097 2 4 1 1 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 5 12 1 80
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42383 PF03110 SBP 3.00E-31 No_clan Cme TF