Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01924 ATGTACTGGACTGCAGATGGTTATGTGGCAACTGTGACTATAACAAACTCTCAGACATACCGACATATCACGAGCCCCGGATGGACCTTGGGTTGGGTATGGGCAAAAGAAGAGGTCATTTGGTCCATGCAGGGAGCTGAAGCTACTGATCAAGGAGATTGTTCGAGTTCCACGTTTACAGAAACTATACCACACAGTTGCAAAAGAGATCCATCAGTGGTTGACTTACTTCCTGGTGCTCCTTATAACAAACAGGCAGCTATGTGCTGCAAAGGTGGTGTTTTGACATCTTGGGGACAGGATCCTTCATCTGCTGTCTCTGCCTTCCAATTGACGGTTGGTCGTTCCGGTAGTTCAAATAATACAGTGAGACTTCCCAAGAATTTCACCTTGAATGGTCCAGGGCTGGGTTACACGTGTAGCCAGGCAAAGATTGTGCCGCCATCAGCTTTCTATTCATCTGATGGTCGTCGAAGAACTAATGCATTGATGACTTGGGATGTGACATGCTCTTACTCACAGTTTCTTGCTTCTCAAACGCCAACCTGTTGTGTTTCCATGTCATCTTTCTATAACTCGAAAATTACTCCTTGTAAAGCATGTGCTTGTGGCTGCAAAGACAGAACGGCATGTATCCTGACCGAATCAGATCTTCAAAGCGTAACGGAATTGAATGCACCTACAAATGACAGTGCTCCAGTGGTGCAGTGCACGGCACATAACTGTCCAATTCAAGTCCACTGGCATGTTAAGGAAAACTACAAGGGATATTGGCGGGTTAAGATAACCATTAGTAATCTCAACTATCGACTTAACTATTCACAATGGACTCTAGTTGTTGAGCACCCCAATTTCAACAACACAGTGGAAGTTTATAGCTTTGTTTATAAGCCACTCACCCCCTTCATCTCTAAGAACGACACTGCTCTGTTCCATGGCTTAAAATTTTTCAATGATGTGCTACTTCAAGCAGGGCCAAATGGAAACGTTCACTCAGAGATTATCTTTCAGAAGGATTCAACATTTACATTGGAACATGGATGGGCTTTCCCTCGAAAAGTTTACTTTGATGGAGATGAATGTGTGATGCCATCTCCTGATTCTTACCCATTTCTACCCAACTTAGCTAATCCAAATCCAATTCTATTGTCGACGACACTAGCTTGCATTTTTCTTCCCATATTTCTTACATTGTTATCTTAG 1203 43.23 MYWTADGYVATVTITNSQTYRHITSPGWTLGWVWAKEEVIWSMQGAEATDQGDCSSSTFTETIPHSCKRDPSVVDLLPGAPYNKQAAMCCKGGVLTSWGQDPSSAVSAFQLTVGRSGSSNNTVRLPKNFTLNGPGLGYTCSQAKIVPPSAFYSSDGRRRTNALMTWDVTCSYSQFLASQTPTCCVSMSSFYNSKITPCKACACGCKDRTACILTESDLQSVTELNAPTNDSAPVVQCTAHNCPIQVHWHVKENYKGYWRVKITISNLNYRLNYSQWTLVVEHPNFNNTVEVYSFVYKPLTPFISKNDTALFHGLKFFNDVLLQAGPNGNVHSEIIFQKDSTFTLEHGWAFPRKVYFDGDECVMPSPDSYPFLPNLANPNPILLSTTLACIFLPIFLTLLS 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25270241 25271941 + MELO3C002046.2.1 Cme12g01924 345141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01924 400 Pfam COBRA-like protein 8 173 IPR006918 GO:0010215|GO:0031225
Cme12g01924 400 PANTHER PROTEIN COBRA 1 394 IPR006918 GO:0010215|GO:0031225
Cme12g01924 400 PANTHER COBRA-LIKE PROTEIN 1 394 - -
Cme12g01924 400 PIRSF COBRA 1 400 IPR006918 GO:0010215|GO:0031225
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme02g01813 Cme12g01924 CCT
Cme02g01813 Cme12g01924 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02279 Cme-Chr6:29983882 Cme12g01924 Cme-Chr12:25270241 8.61E-28 dispersed
Cme07g01007 Cme-Chr7:11264550 Cme12g01924 Cme-Chr12:25270241 0 dispersed
Cme06g00765 Cme-Chr6:5050674 Cme12g01924 Cme-Chr12:25270241 5.36E-39 transposed
Cme12g01924 Cme-Chr12:25270241 Cme02g01812 Cme-Chr2:24896065 0 wgd
Cme12g01924 Cme-Chr12:25270241 Cme07g01006 Cme-Chr7:11262888 2.16E-178 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01924 - - csv:101203708 797.349