Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01927 ATGTCTTTAGAACAAGAATTTCTCTTCCTAATTCCTTCAACAATGGCCAATAATCTCAATCTCTTCCTTTGTTTCCTTCTCTTTATTTGTTTCTTCACTCTCTGCCTTAGCCCTGGTGGTCTAGCTTGGGCTCTAATTTCAAAGCCAAAAAACCAATCCATCATTCCTGGCCCTTGTGGCACTCCATTTCTTGGCCAAGTTTCAACCTTTACCAATTCCTTAACTCATAGACTCCTTGCTAATCTTGCCCATACCTTAAAGGCCAAGTCTCTAATGTCATTCTCAATTGGGTTCACTCGTTTTGTGATTTCAAGCAACCCCATCACAGCCAAAGAGCTTTTGAATAGCTCAGCTTTTGCTGATCGTCCAATTAAAGAATCAGCTTATGAGCTTTTGTTTCATAGAGCAATGGGGTTTGCTCCATATGGTGAATATTGGAGGAACCTAAGGAGAATTTCATCTACTTTTTTGTTTAGTCCTAAAAGGATTTGTGGATTTGGGGTTTTGAGGGAGAGAATCGGGGTTAAAATGATGGAGGAAATTGAGGGTTTGATGGTGAAAAATGGGGAAGTTGAAGTTAGGAAAGTTTTGCATTTTGGGTCATTGAGTAATGTTATGGAGAGTGTGTTTGGGAAAAGTGTGGAGTTTGGTGATTGGGAGATTGATGAATTAGTGACTGAAGGGTATGATTTGCTTGGGAGTTTTAATTGGAGTGATCATTTTCCTGTTTTGGGTTGGTTGGATTTACAAGGTGTGAGAAAAAGGTGTAGAGTTTTGGTGGGTAAAGTTAATGTTTTTGTTGGGAAAATTATTGAAGAACATAGAATGAAGAGGAGGGTTATTGTTGGTGATGAAGAAAATAAGAACAGCCCTAATGATAATGAAGATGAAGATTTTGTTGATGTGTTGCTTGATTTGGAAAAGGAAAACAAACTCACCGACTCTGATATGATTGCTGTGTTATGGGAAATGATCTTTAGAGGAACGGATACGGTGGCAATTCTCCTAGAATGGATTTTAGCAAGAATGGTTCTTCATCCTGACATCCAAGCTAAGCTTCAATATGAAATCGATCAAGTTGTGATGAAAACTGGTCGAAACATCTCGAATTTAGACCTCCCAAATCTTCCTTATCTCCATGCAGTCGTCAAAGAGACTCTTAGAATGCACCCTCCCGGCCCACTTCTCTCTTGGGCACGCCTTGCCATCCATGACACCCATGTCGCAGGCCACTACATTCCTGCTGGCACCACTGCGATGGTCAACATGTGGGCCATAACCCACGACGACCAAATTTGGCCCGACCCAACAATATATAACCCAAACCGATTCATTAAAGATGACGTAGCTATAATGGGGTCAGATCTACGACTTGCACCATTTGGATCTGGTAGAAGGGTTTGTCCTGGTAAAGCAATGGGGCTAGCCACCGTTGAACTGTGGCTCGCTCAGTTAGTTCATAAGTTCGAATGGGTTCAAGCTGATGAATCGAAAATCAAAGTGGATTTGTCTGAGTGTTTGAAGCTATCTCTGGAAATGAAACACCCTTTGATTTGTAGGGCTATCCCGAGGAATGTAGGGTTCGAGTCTCACCCATGA 1599 41.53 MSLEQEFLFLIPSTMANNLNLFLCFLLFICFFTLCLSPGGLAWALISKPKNQSIIPGPCGTPFLGQVSTFTNSLTHRLLANLAHTLKAKSLMSFSIGFTRFVISSNPITAKELLNSSAFADRPIKESAYELLFHRAMGFAPYGEYWRNLRRISSTFLFSPKRICGFGVLRERIGVKMMEEIEGLMVKNGEVEVRKVLHFGSLSNVMESVFGKSVEFGDWEIDELVTEGYDLLGSFNWSDHFPVLGWLDLQGVRKRCRVLVGKVNVFVGKIIEEHRMKRRVIVGDEENKNSPNDNEDEDFVDVLLDLEKENKLTDSDMIAVLWEMIFRGTDTVAILLEWILARMVLHPDIQAKLQYEIDQVVMKTGRNISNLDLPNLPYLHAVVKETLRMHPPGPLLSWARLAIHDTHVAGHYIPAGTTAMVNMWAITHDDQIWPDPTIYNPNRFIKDDVAIMGSDLRLAPFGSGRRVCPGKAMGLATVELWLAQLVHKFEWVQADESKIKVDLSECLKLSLEMKHPLICRAIPRNVGFESHP 532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25293372 25295786 - MELO3C002043.2.1 Cme12g01927 345144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01927 532 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 461 470 IPR017972 GO:0005506|GO:0016705
Cme12g01927 532 Gene3D Cytochrome P450 44 522 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01927 532 PRINTS P450 superfamily signature 327 344 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01927 532 PRINTS P450 superfamily signature 381 392 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01927 532 PRINTS P450 superfamily signature 459 468 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01927 532 PANTHER CYTOCHROME P450 78A7-RELATED 5 524 - -
Cme12g01927 532 PANTHER CYTOCHROME P450 FAMILY PROTEIN 5 524 - -
Cme12g01927 532 Pfam Cytochrome P450 56 501 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01927 532 PRINTS E-class P450 group I signature 316 333 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01927 532 PRINTS E-class P450 group I signature 336 362 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01927 532 PRINTS E-class P450 group I signature 380 398 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01927 532 PRINTS E-class P450 group I signature 422 446 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01927 532 PRINTS E-class P450 group I signature 458 468 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01927 532 PRINTS E-class P450 group I signature 468 491 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g01927 532 SUPERFAMILY Cytochrome P450 55 524 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g00659 Cme-Chr10:4202033 Cme12g01927 Cme-Chr12:25293372 0 dispersed
Cme11g02256 Cme-Chr11:29665912 Cme12g01927 Cme-Chr12:25293372 5.99E-171 dispersed
Cme12g01927 Cme-Chr12:25293372 Cme08g00815 Cme-Chr8:5390947 4.96E-78 dispersed
Cme11g00196 Cme-Chr11:2349690 Cme12g01927 Cme-Chr12:25293372 9.74E-170 transposed
Cme12g01927 Cme-Chr12:25293372 Cme03g01458 Cme-Chr3:23861080 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01927 K20619 - csv:101203458 997.267