Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01929 ATGAACAAGCTTTTTTCTCGCAAACTTGCATCAAGGCTTTCGAATTCCTACGCCAACTCTATATATTGTAAGGATTGCGCTTCTTTTTCCACACTAGGGAGAACCCATAACCAAAACCATCTCTTTGGCTCTTTCGTCACTCGCCCCCTTCAGGATCACTCGCGTTCATGGAGTTCACATCGAAGTTTTGTGCAGAAAATTCATGGGTTTTTCTCAGTTCCGGTGGTTGGAAAGCGACTCATGGTGAATCCTTCAAATACCCATTTCAAGGGGTCAATGAAGAGTGTAGTAGAAAGCAGGTCTCTATTTACGGGAACCCCGTTTTCGAAATTGAAATTTCAGTTGAAACCTGGTTTTGTTCATCAATGGGGAGGCAGGCGATCATGGTTCCAAAGGCTGACGCCTAAAGATGTGGTTTTGGGCTTGATTATAGCTAATGTTGCTGTTTTCCTTCTCTGGCGGATTGCTGATCCTATCTTTATGTCAAAAAATTTTACTATTTCAGTAGAAAATGTTAGAAGTGGCCGCATACATACATTGATTACATCAGCCTTCAGTCACATAGATACTGGCCATTTAATATCCAACATGATTGGACTGTACTTCTTTGGGATGAACATCGGTAGTGTATTTGGTTCTGAGTTTTTGTTGAAATTGTATCTGGCTGGAGCAATTGGTGGGTCAGCATTTTACTTGGCGCATCATCTATTTCAAGCATCGTCCTCAAAGAGCCGGTCGTTTTGGGGCAAGGACCCAGTGCGAGCACAAGGATTGGGCGCAAGTGGAGCAGTAAATGCTATTATGTTACTCGATATATTCCTCTTCCCAAAGGCTACCCTCTATCTCCAATTCTTTATACCTGTTCCTGCCATCTTACTGGGCATTTTTCTCATTGGAAAAGACATGTTAAGGATACTAGAGGTATGA 927 42.39 MNKLFSRKLASRLSNSYANSIYCKDCASFSTLGRTHNQNHLFGSFVTRPLQDHSRSWSSHRSFVQKIHGFFSVPVVGKRLMVNPSNTHFKGSMKSVVESRSLFTGTPFSKLKFQLKPGFVHQWGGRRSWFQRLTPKDVVLGLIIANVAVFLLWRIADPIFMSKNFTISVENVRSGRIHTLITSAFSHIDTGHLISNMIGLYFFGMNIGSVFGSEFLLKLYLAGAIGGSAFYLAHHLFQASSSKSRSFWGKDPVRAQGLGASGAVNAIMLLDIFLFPKATLYLQFFIPVPAILLGIFLIGKDMLRILEV 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25309166 25314168 + MELO3C002041.2.1 Cme12g01929 345146

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01929 308 Pfam Rhomboid family 173 298 IPR022764 GO:0004252|GO:0016021
Cme12g01929 308 Gene3D - 136 307 IPR035952 -
Cme12g01929 308 PANTHER RHOMBOID PROTEASE 20 307 - -
Cme12g01929 308 PANTHER RHOMBOID-LIKE PROTEIN 12, MITOCHONDRIAL 20 307 - -
Cme12g01929 308 SUPERFAMILY Rhomboid-like 135 303 IPR035952 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01929 - - - csv:101205793 585.489
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g00964 Cme-Chr11:13682227 Cme12g01929 Cme-Chr12:25309166 2.36E-18 dispersed
Cme12g01929 Cme-Chr12:25309166 Cme12g01930 Cme-Chr12:25314509 1.53E-11 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g453 . . . . . . . . Cmo13g01111 . . . . . . Cpe20g00083 . . . . . . . . . . . . . . . . Cone16ag0216 . . Lsi02g00129 Csa01g00612 Chy12g01488 Cme12g01929 . . Bda11g01765 . . . . . Sed08g2128 . . Cma13g01067 . Car13g00902 . . . Bhi08g01072 Tan05g2345 Cmetu12g1181 Lac10g0175 Hepe07g2452 . . Cla04g01146 Cam04g1200 Cec01g1712 Cco01g1756 Clacu04g1227 Cmu04g1207 Cre01g1504 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013453 1 1 0 0 1 1 1 1 1 1 0 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 25