Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01933 ATGATCTCAAAGTTAAAGGAAGACGGTGCTCATGATGAAGCAAAGCAAATGGAGGGGAAAAGGAAGAAAGCAAGAACATGTTCAAGACAAGGGCAATTCCTAAGAGGCAATCCAAGAATTTTTAGGGTTTCACCATTTTTTGGAGGTAAAGATAGGCACAGCAAAGTTTGTACAATAAAAGGGTTAAGAGATAGAAGGATTAGGCTTTCAATTCCAACAGCAATTCAACTCTATGATTTGCAAAACAAACTTGGTTTAAGCCAACCCAGCAAAGTCATCGATTGGCTTATTGATGTCACAAGGTTTGAAATTGATAAGCTCCCACCTCTCCATTTTCCAAAAGATTTTGACCCAAATGCTTCAATTCTTCATCATTCTGATATTGGAGGAGATGCTGCTTTGATGAAGGCCAAAAATGAAGAAACTGATCAGACACTTTTGGTTCAAACCAATGACATTAATGGAGACTCTTCCCATTTTGAACCTCCAAGCTTTCCATTCCCATTCATGTATCAGACTAATTCATCTCCATTTTCCTTCTGA 543 38.12 MISKLKEDGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIKGLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPKDFDPNASILHHSDIGGDAALMKAKNEETDQTLLVQTNDINGDSSHFEPPSFPFPFMYQTNSSPFSF 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25334307 25335161 - MELO3C002038.2.1 Cme12g01933 345150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01933 180 ProSiteProfiles TCP domain profile. 49 107 IPR017887 -
Cme12g01933 180 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 6 130 IPR005333 GO:0003700
Cme12g01933 180 PANTHER TCP FAMILY TRANSCRIPTION FACTOR 6 130 - -
Cme12g01933 180 MobiDBLite consensus disorder prediction 1 25 - -
Cme12g01933 180 Pfam TCP family transcription factor 49 127 IPR017887 -
Cme12g01933 180 MobiDBLite consensus disorder prediction 1 29 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme02g01824 Cme12g01933 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme12g01176 Cme-Chr12:19903500 Cme12g01933 Cme-Chr12:25334307 3.32E-24 dispersed
Cme12g01933 Cme-Chr12:25334307 Cme06g01651 Cme-Chr6:17801439 9.09E-14 dispersed
Cme12g01933 Cme-Chr12:25334307 Cme02g01824 Cme-Chr2:24983902 1.17E-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42384 PF03634 TCP 1.10E-23 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01933 - - cmo:103488791 368.622