Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01942 ATGGGGGATTGTGAATCAATTATGCCAACCTCTGAAGGGGAGCAACACGCTCTAGCTGCATTTCAGCATCTAGTCAAGTTCTTAAGAAAAAGTCAGAACGTGAATAATGAGTTGAAAAAGCTCCTTGCCGATCTCGATTCTCATTTGACTTCCTTGCCGTTGTATACTCATTTAGAGGTTGGGAAGTTGAGCGAGTTAGAGACAAGGTTCATATCTGCGGAGGAGAAGATTATGAGATGGGAATCTAACAAATCCATGATATGGGATTCTGGTCCCAAAGAGGCTTGTGAATATATGAAGGCTGTTGATGAAATTCATAAAGTTCAGGAAGGTCTAAGAAGTTTATCTGCAAATGACAGTCAAAAGCAAAATGAACTTCTTTTCCAGGCCGACTCTGTCGTACAGATTGCAATGGCAAGGCTAGAGCAGGAGCTAATCCACATTCTTGTTCAGCACAAACTATATTTTGAGCCTGACTATGTTCCCTTCCAGTCTGGTGGCTATGATGTTGTCTATAACGAGTCCTTTGTTTCAGCTGAGGACAGTTTGGAGGTGGAAACTTCCCACGGAGAGAGTATTCCTGCTATATATGCTGTGAACTTGGTCCATCCACACGTGATCCCTCATATTAAATCCATTGGAAATCTTATGTTTACTTCAAATTATATTCAGGAATTCTGCCTGGCTTTTGTTAAAATGCGGAAAGATGCGTTGAACGAGTATCTGTTCATTCTCGAAATGGAGAAGTATAGCATTGGAGATTTGCTGAGCATGGAATGGGGCGACTTAAACGTGAAGATCAAGAAATGGGTTTGGCTTATTAAAATTGTTATTAGAGTCTACCTTACTAGTGAGCAAAGACTCTGTAACAATATATTTGAAGGCATTGGATCTTATAGTGCAGTCTGCTTTACTGAGATTTCAGCAACTGCTATGCTTCGCCTGTTGAATTTTGGAGAGGCCATAGCTATGGAACCCCATCGACCGGAAAAGCTGTTTCACTTGCTAGACATGTATGAGGTCCTAAAGAATCTTCTTGGATACATAGATGAATTGTTTTCCGAAGAAACAGAAAAGGGTTGTTTTCTCAAAGTTGAGTTCCATAATCTTTTCAAGAAATTGGGTGATTCTGCTAGGGCTACGTTTGTAGATTTTGGAAATTTCATTGCATGTTCCATATCAACAAACCCTTTTCCTGGCGGTGGTGTTCATCATCTAACAAGGTATGTAATGAACTACATTAAGACCCTTACTGTTTTCAGAGACTCGCTTGTTTTCCTTCTCCAAGATCAAGCAACAGATGGCTTAAGTCCAACTTCTGAGCTGCAGAGTGAAATCAATAGCATACCTTGCCCAATGGCTTACCACCTTCAGTCAATCACTTCACATTTGATATCCAATCTTAATAACAAATCCAAGTTGTACAAGGACGATGCTCTACGACATATTTTCTTAATGAATAACATCCATTATATAGTTCAAAAGGTTGAAAACTCTGAACTCGTAGCCTTTCTTGGAAGTGGGTGGATGCGAGAACATATAAGAATGTTTCAAAGTCACGCAATTATCTATATGAGAGTCACCTGGCAGTCTGTTCTTTCTCTGCTAAGGCTTGATGGTGATGGAATGAAAACTCCAAAGGCAGTCTTTAAAGAAAAGTACCGGGCCTTCAATGCAGCCTTTGAGGAGATATATAAGAACCAAACCGGTTGGAATGTCCCAGATCCTCAACTACGTGATGACTTGCTTATTCAAACCTCAAATTGTGTAATTCAAGCATATCGAATCCTCTACGAGTCAAGGTCTCAATCTAACCGTGAAAAGTATATCAAATATACGACCGATGATCTGAGCAAGCATATGCTGGATCTCTTACAAGGCTCATCTTGCTCGTTGCAAAGTTCACGCCGGAGATGA 1917 40.38 MGDCESIMPTSEGEQHALAAFQHLVKFLRKSQNVNNELKKLLADLDSHLTSLPLYTHLEVGKLSELETRFISAEEKIMRWESNKSMIWDSGPKEACEYMKAVDEIHKVQEGLRSLSANDSQKQNELLFQADSVVQIAMARLEQELIHILVQHKLYFEPDYVPFQSGGYDVVYNESFVSAEDSLEVETSHGESIPAIYAVNLVHPHVIPHIKSIGNLMFTSNYIQEFCLAFVKMRKDALNEYLFILEMEKYSIGDLLSMEWGDLNVKIKKWVWLIKIVIRVYLTSEQRLCNNIFEGIGSYSAVCFTEISATAMLRLLNFGEAIAMEPHRPEKLFHLLDMYEVLKNLLGYIDELFSEETEKGCFLKVEFHNLFKKLGDSARATFVDFGNFIACSISTNPFPGGGVHHLTRYVMNYIKTLTVFRDSLVFLLQDQATDGLSPTSELQSEINSIPCPMAYHLQSITSHLISNLNNKSKLYKDDALRHIFLMNNIHYIVQKVENSELVAFLGSGWMREHIRMFQSHAIIYMRVTWQSVLSLLRLDGDGMKTPKAVFKEKYRAFNAAFEEIYKNQTGWNVPDPQLRDDLLIQTSNCVIQAYRILYESRSQSNREKYIKYTTDDLSKHMLDLLQGSSCSLQSSRRR 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25362669 25366201 - MELO3C002031.2.1 Cme12g01942 345159

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01942 638 Coils Coil 63 83 - -
Cme12g01942 638 SUPERFAMILY Cullin repeat-like 86 624 IPR016159 -
Cme12g01942 638 Gene3D Exocyst complex component Exo70 78 634 - -
Cme12g01942 638 PANTHER EXOCYST COMPLEX PROTEIN EXO70 23 632 IPR004140 GO:0000145|GO:0006887
Cme12g01942 638 Coils Coil 24 44 - -
Cme12g01942 638 Pfam Exo70 exocyst complex subunit 268 622 IPR046364 GO:0000145|GO:0005546|GO:0006887
Cme12g01942 638 PANTHER EXOCYST COMPLEX COMPONENT EXO70E2 23 632 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01942 K07195 EXOC7, EXO70; exocyst complex component 7 - csv:101202747 1155.97
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g01189 Cme-Chr7:16194477 Cme12g01942 Cme-Chr12:25362669 2.75E-176 dispersed
Cme12g01592 Cme-Chr12:23218332 Cme12g01942 Cme-Chr12:25362669 5.81E-129 dispersed
Cme12g01942 Cme-Chr12:25362669 Cme04g01362 Cme-Chr4:19219097 1.21E-95 dispersed
Cme12g01942 Cme-Chr12:25362669 Cme11g01259 Cme-Chr11:19404241 8.55E-75 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g659 . . . Bda15g00670 . Bpe13g00204 Bma06g00256 . Cmo13g01120 . . Cma11g00035 . . . Cpe20g00075 . . . . . . . . . . . . . . . . . . . Lsi02g00119 Csa01g00599 Chy12g01498 Cme12g01942 . . Bda11g01727 Bda14g00880 . . . . Sed08g2120 . . Cma13g01074 . Car13g00910 . . . Bhi08g01084 Tan05g2361 Cmetu12g0690 Lac10g0148 Hepe07g2463 . . Cla04g01154 Cam04g1212 Cec01g1723 Cco01g1768 Clacu04g1239 Cmu04g1218 Cre01g1514 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011638 3 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 30