Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01952 ATGAATCCTGATAAATTCACCCACAAGACAAATGAGGCTCTAGCTGGAGCTCATGAATTGGCATTGAATTCTGGCCATGCTCAATTGACACCGCTTCATTTGGCGGTTGCTTTGATTTCTGATCCGAGTGGGATATTGAGCCAAGCGATTGCTAGTTCCGGCGGTGAAAATGCTCATAAAGAAGTGGAGACGGTTTTCAAGCGGGCATTGAAGAAGCTACCATCTCAATCCCCTGCACCCGATGAAGTGCCGGCGAGTACAACTCTGATTAAGGCGATTCGAAGAGCACAAGCTGCGCAGAAATCGCGAGGAGACACGCATTTAGCCGTTGATCAATTGGTTCTTGGCCTTCTCGAGGATTCTCAGATTGGAGATTTGCTCAAGGAAGCTGGTGTCACCACCGCGAAAGTTAAATCTGAGGTCGAGAAACTCCGTGGAAAAGAAGGGAAGAAAGTGGAGAGTGCATCTGGAGACACAACCTTCCAGGCACTCAAAACTTACGGGCGAGACCTGGTAGAACAAGCGGGGAAACTCGACCCAGTTATTGGCCGTGATGAGGAAATTCGTCGAGTGGTGAGGATTTTATCAAGAAGAACTAAGAATAACCCAGTTCTTATTGGGGAGCCTGGTGTTGGCAAAACTGCAGTGGTTGAAGGATTAGCCCAGCGAATTGTGAGAGGAGATGTCCCAAGTAATCTTGCTGATGTGAGGCTCATAGCTTTGGATATGGGTGCTCTGGTGGCGGGGGCTAAGTACAGAGGAGAATTTGAAGAGAGATTGAAGGCAGTATTAAAGGAAGTGGAAGATGCAGAAGGGAAAGTCATATTGTTTATTGACGAGATTCATCTTGTTCTTGGTGCTGGAAGAACTGAAGGGTCTATGGATGCTGCCAATCTTTTCAAGCCAATGCTGGCTAGAGGGCAGTTACGTTGCATTGGGGCAACTACTCTGGAAGAGTACAGGAAGTATGTTGAGAAGGATGCGGCATTTGAGAGAAGGTTCCAACAAGTTTATGTGGCTGAACCGAGTGTACCTGACACTATCAGCATCCTTCGAGGATTGAAAGAGAGATATGAAGGCCACCATGGTGTTAGGATACAGGACCGAGCTCTCGTCGTTGCAGCGCAGCTTTCGAGTCGATATATTACTGGGCGACACCTTCCTGATAAGGCAATTGATTTAGTTGATGAAGCTTGTGCAAATGTGAGAGTCCAGCTCGATAGCCAGCCTGAAGAAATTGATAACTTGGAGAGGAAGCGAATGCAGCTTGAAGTTGAACTTCATGCTCTTGAAAAGGAAAAGGATAAGGCTAGTAAAGCTCGTCTTGTTGAAGTGCGGAGAGAGCTTGATGATTTGAGAGATAAGCTTCAACCTTTGTTGATGAAATATCGCAAGGAGAAAGAAAGGGTTGATGAGATTAGAAGACTTAAACAAAGGAGGGAGGAACTACAAATAGCTTTGCAAGAGGCTGAAAGGAGATATGATTTGGCAAGGGCTGCTGATTTGCGATATGGAGCAATCCAAGAAGTAGAAGCTGCAATAGCACGGATTGAAGGGAACACTGATGAGAACCTGATGTTAACCGAAACTGTTGGACCGGAACAAGTGGCCGAAGTGGTGAGCCGCTGGACTGGAATACCTGTCACAAGGCTCGGCCAGAATGATAAAGAGAGACTGGTTGGGCTTGCTGACAGACTGCACAAGAGAGTTGTGGGCCAGAATCAAGCTGTGGATGCTGTCGCTGAGGCTGTTTTACGATCAAGAGCCGGATTGGGGCGGCCACAACAGCCAACCGGATCTTTCTTGTTCCTGGGTCCAACTGGTGTTGGCAAAACCGAGCTTGCAAAGGCGCTAGCCGAGCAACTTTTTGATGATGAAAACCTCCTGGTGAGGATTGACATGTCTGAATATATGGAACAACACTCAGTTTCTCGCCTCATTGGTGCTCCTCCTGGGTATGTTGGACATGAGGAAGGAGGGCAACTCACAGAGGCAGTAAGGCGGAGGCCTTACAGTGTTATTCTGTTTGATGAAGTGGAGAAAGCTCACATCTCTGTCTTCAACACTCTTCTCCAAGTTTTAGACGACGGAAGACTGACGGATGGTCAAGGCCGTACCGTAGATTTTAGAAACACGGTCATTATCATGACTTCAAATCTTGGAGCTGAACATCTCCTTGCTGGATTAATGGGCAAGTGCACGATGCAAGTTGCTCGTGATCGAGTCATGCAAGAGGTGCGGAAACATTTCAGGCCAGAGTTACTCAATCGTCTTGACGAAATAGTTGTATTTGATCCACTTTCACACGAGCAGCTGAGGAAAGTTGCTAGGCTGCAAATGAAAGATGTTGCTGCTCGCCTAGCCGAGAGAGGCGTTGCCTTGGCTGTAACCGATGCGGCTCTCGACTATGTCTTAGCAGAGAGCTATGATCCAGTGTATGGTGCTAGACCAATAAGAAGATGGCTGGAGAAAAGGGTGGTGACGGAACTGTCCAGAATGTTGATCAAAGAAGAAATCGATGAGAATTCAACTGTGTACATAGATGCAGCGGCTGATGGGAATAGCTTGACGTACAGAGTGGAGAAGAACGGTGGTTTTGTTGATGCAGCGACTGGCAAAAAATCTGATGTTTTGATTCAAATCAACAATGTTCCAAGAAGTGATGCTGCTCAGACTGTGAAGAAGATGAAGATCGAAGAAATTGATGAAGATGAAATGGAAGAGTGA 2727 46.83 MNPDKFTHKTNEALAGAHELALNSGHAQLTPLHLAVALISDPSGILSQAIASSGGENAHKEVETVFKRALKKLPSQSPAPDEVPASTTLIKAIRRAQAAQKSRGDTHLAVDQLVLGLLEDSQIGDLLKEAGVTTAKVKSEVEKLRGKEGKKVESASGDTTFQALKTYGRDLVEQAGKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEDAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTISILRGLKERYEGHHGVRIQDRALVVAAQLSSRYITGRHLPDKAIDLVDEACANVRVQLDSQPEEIDNLERKRMQLEVELHALEKEKDKASKARLVEVRRELDDLRDKLQPLLMKYRKEKERVDEIRRLKQRREELQIALQEAERRYDLARAADLRYGAIQEVEAAIARIEGNTDENLMLTETVGPEQVAEVVSRWTGIPVTRLGQNDKERLVGLADRLHKRVVGQNQAVDAVAEAVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVILFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLAGLMGKCTMQVARDRVMQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAARLAERGVALAVTDAALDYVLAESYDPVYGARPIRRWLEKRVVTELSRMLIKEEIDENSTVYIDAAADGNSLTYRVEKNGGFVDAATGKKSDVLIQINNVPRSDAAQTVKKMKIEEIDEDEMEE 908
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25431148 25434741 - MELO3C002020.2.1 Cme12g01952 345169

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01952 908 Coils Coil 466 500 - -
Cme12g01952 908 Pfam Clp amino terminal domain, pathogenicity island component 17 62 IPR004176 -
Cme12g01952 908 Pfam Clp amino terminal domain, pathogenicity island component 96 146 IPR004176 -
Cme12g01952 908 ProSitePatterns Chaperonins clpA/B signature 1. 295 307 IPR018368 GO:0005524
Cme12g01952 908 PANTHER CHAPERONE PROTEIN CLPB3, CHLOROPLASTIC 4 861 - -
Cme12g01952 908 SMART ClpB_D2_small_2 767 858 IPR019489 -
Cme12g01952 908 SUPERFAMILY Double Clp-N motif 4 157 IPR036628 -
Cme12g01952 908 Gene3D - 550 766 IPR027417 -
Cme12g01952 908 ProSiteProfiles Clp repeat (R) domain profile. 3 147 IPR004176 -
Cme12g01952 908 SMART AAA_5 597 741 IPR003593 -
Cme12g01952 908 SMART AAA_5 199 344 IPR003593 -
Cme12g01952 908 CDD AAA 182 337 - -
Cme12g01952 908 Gene3D - 3 148 IPR036628 -
Cme12g01952 908 ProSitePatterns Chaperonins clpA/B signature 2. 631 649 IPR028299 -
Cme12g01952 908 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 546 848 IPR027417 -
Cme12g01952 908 Coils Coil 406 455 - -
Cme12g01952 908 Pfam AAA domain (Cdc48 subfamily) 597 761 IPR003959 GO:0005524|GO:0016887
Cme12g01952 908 Gene3D - 344 544 IPR027417 -
Cme12g01952 908 CDD AAA 571 766 - -
Cme12g01952 908 Pfam AAA lid domain 344 443 IPR041546 -
Cme12g01952 908 Pfam ATPase family associated with various cellular activities (AAA) 204 317 IPR003959 GO:0005524|GO:0016887
Cme12g01952 908 Pfam C-terminal, D2-small domain, of ClpB protein 767 847 IPR019489 -
Cme12g01952 908 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 601 619 IPR001270 GO:0005524
Cme12g01952 908 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 646 664 IPR001270 GO:0005524
Cme12g01952 908 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 675 693 IPR001270 GO:0005524
Cme12g01952 908 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 708 722 IPR001270 GO:0005524
Cme12g01952 908 PANTHER ATP-DEPENDENT CLP PROTEASE 4 861 - -
Cme12g01952 908 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 545 IPR027417 -
Cme12g01952 908 Gene3D - 767 865 - -
Cme12g01952 908 Coils Coil 253 273 - -
Cme12g01952 908 Gene3D - 150 343 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01952 K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB - csv:101221981 1701.8
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme02g01838 Cme12g01952 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01122 Cme-Chr1:14366281 Cme12g01952 Cme-Chr12:25431148 1.42E-170 transposed
Cme02g01500 Cme-Chr2:22097335 Cme12g01952 Cme-Chr12:25431148 8.96E-11 transposed
Cme02g01619 Cme-Chr2:23372691 Cme12g01952 Cme-Chr12:25431148 8.64E-14 transposed
Cme02g02111 Cme-Chr2:26869675 Cme12g01952 Cme-Chr12:25431148 0 transposed
Cme03g00255 Cme-Chr3:3256055 Cme12g01952 Cme-Chr12:25431148 2.05E-10 transposed
Cme03g01134 Cme-Chr3:20853879 Cme12g01952 Cme-Chr12:25431148 1.41E-17 transposed
Cme04g01271 Cme-Chr4:17772460 Cme12g01952 Cme-Chr12:25431148 1.01E-15 transposed
Cme04g02343 Cme-Chr4:30303703 Cme12g01952 Cme-Chr12:25431148 4.67E-08 transposed
Cme05g01265 Cme-Chr5:20681624 Cme12g01952 Cme-Chr12:25431148 3.46E-10 transposed
Cme05g01376 Cme-Chr5:22910444 Cme12g01952 Cme-Chr12:25431148 2.72E-12 transposed
Cme05g01440 Cme-Chr5:23745694 Cme12g01952 Cme-Chr12:25431148 2.49E-15 transposed
Cme06g01745 Cme-Chr6:20004104 Cme12g01952 Cme-Chr12:25431148 0 transposed
Cme07g00113 Cme-Chr7:719658 Cme12g01952 Cme-Chr12:25431148 0 transposed
Cme11g00696 Cme-Chr11:8207496 Cme12g01952 Cme-Chr12:25431148 1.72E-22 transposed
Cme12g00075 Cme-Chr12:741387 Cme12g01952 Cme-Chr12:25431148 1.10E-09 transposed
Cme12g00214 Cme-Chr12:2368500 Cme12g01952 Cme-Chr12:25431148 0 transposed
Cme12g01952 Cme-Chr12:25431148 Cme02g01838 Cme-Chr2:25082929 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g643 Blo04g00788 . . . Bpe12g00459 . Bma06g00155 . Cmo13g01128 . . . . . . Cpe20g00068 . Bhi02g00694 Tan09g2052 Cmetu02g0330 . . . . Cla06g01547 Cam06g1708 Cec06g1768 Cco06g1769 Clacu06g1675 Cmu06g1621 Cre06g2434 Cone2ag0814 Cone16ag0200 . . Lsi02g00111 Csa01g00590 . Cme12g01952 . . Bda11g01719 Bda14g00871 . Bpe15g00585 Bma03g00847 Bma08g00280 Sed08g2114 . . Cma13g01080 . Car13g00917 . . . Bhi08g01100 Tan05g2372 Cmetu12g0960 Lac10g0140 Hepe07g2473 . . Cla04g01163 Cam04g1221 Cec01g1732 Cco01g1778 Clacu04g1248 Cmu04g1227 Cre01g1523 Lsi06g01422 Csa01g00282 Chy02g02452 Cme02g01838
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002248 4 2 1 2 2 2 4 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 63