Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01954 ATGCCTGGAAACGAAGTTGGAGACAGGGTCCACAATTTCTTTGGCCAAGAAAATTTGTATCAGGGCCAGCATCAGTCACAGGCTGCTGATGGAAGCTGGGCTGGTCTTAATAATAATCTATGGGTTAGAAACCAGAGAGAGATTAATTCTCCTTTTATTGCAAATTTGAAGAATTATAATGCACACCAACCAGATTCTGGAGGAGTGGGCCAGCCGTCTCATTCGCTTCATGGTTTGAACTTCTCTCAATCATATATAAATTCCGAGATAGGAAGAAGCGAGTCTCAAAATCAACAACAAGCTCTGAATGGTTATGCAGCCGGCCAACAACTTTTCCATCCAAGGCAAATTGAAGCAAACTTTTTAGGTGCAGATGCAGTATCTGATAGGCATTTAACATCCAGAGGCCTATCTATTCATGAAGCACAACAAGTGAATAATCCTGAACTGAGCAAGAAAAATGTAGCTAGGTTGGAAACTACTGATTCTCCTGTAAATTTTGATTTTTTTGGGGGTCAACAGCAATTGAGTGGCAGAAATCCCAGTGTTTCACAGATTTTGCCTAAGCAGCAGCTTGGGAATCCTGACATGCAGCTTCTGCAACAACAAGCGATGTTTTCACATATACAAGAACTTCAGAGGCAACACCAATATCAACAGCAGGAAGCAAGACAACATGGTTCGATGAATCAGATTAGCTCAAAGCCGGGAGCAGGAAACCATTCAGCTGCGCTGATTGATGGTATTCCTGTTAATGAATTATCTACCTCTCCTTGGCAACCTGAGCATATGGGGAGTAATACAAACTCGTTGCAGCATAGTTTGTCTACACCAATGCAGGGTCCCTCCAGTGGATTTGTTTTTCCTTCAGAGCAGCAACAAGCACTGCGCATGATGGGTTTAATTCCGGAACAAGTTGATCAATCTTTGTATGGTGTTCCTATTTCTTCTGCAAGTAGTTTTCTAGGTTCAAATTCTCTCATTCCAACAGATAAACCTGCTATGCAGCAGCTATCTGTTAGTAACAACCCTGTTTCAGGGAGCCATTATACTGCATACCCAGATCAGGTTAGCATGCAAGATGGAATGGTTGTGAGACAGGATTTCCAGGGGAAAAGTATGTTTGGGATGTCTGCTAGTCAAGGTCTAAATGGTGGATTAAATTCTGAAAATTCTCAGCATGTGAATCTCCAACATAGGCATGCATCTATGCAGGAGTTTAGTGGCAGACAAGAGTTTGATGGTCGATCTGAACTGTCACAGGAGAAGACAATGGCACAGATTGCTCCGTCGCAGAATGTGGCTACGTTAGATCCCACTGAGGAGAAGATTTTGTATGGTTCGGATGACAACTTGTGGGATGCTTTTGGTCGGAGCGATAATATTACTGCAGGTGGTTACAGCATGGCAGATGGTAGTGATTTTAATTCTGGATATTCCTTTTTACAGAGTGGAAGTTGGAGTGCTCTGATGCAGTCAGCTGTAGCAGAAACTTCAAGTGGGGATATGGGCGTTCAAGAAGGTTGGGGTGGTGTAAACTTCAATAATAGTGGGCCTCCCAATGGAAATCAGCAGCATTCAGAAGCTAATGACAGTGGAAAACTTCAACCGGTTTGGGTTGATAACAACTTGCAGACTTTAAATGCTAGACATGCTTCTGTCTCTGCCGAGGCTAATAGTAAGCCCAACAATTATATAAACTCAGCCAATGTCCCTTCATTTCAACAACCTGGACAGAAATCATTCTTTCAACAAACTGAAAGCTTTCAGAACAGTAGTGCCCAAAATTCAACCCCTTCGTCATTGGAAGGTGAAAGAAAGTGGGTAGATCGAAATCTGCAACCGAAGTCACATGCTGAAGGTCGGAATTTATCTGAAAATGAAGGTAATACCTCAGGTGTGGAAATCAACGCAAATAATTTGTCAGGTTCTTGGCTCCGTCAACAGAGTGTGGCCACTTATAATAGCCAACCAAGTAAGCCTAATGGTTGGAGCTATATTGAACCGATGTTCTCCCATGAAGGTAACAATATGAAAAATCATGAGAACCATAACATGTCACAATCTTCTCAGGGTGATCATAAGCGATCTATACGTGAAGAGATGGGCTCTTCTGCTATCTTCAAGCAAAACCACGATTCAATTTCCAACCCAAATGATGAATTGCAGCATGCAAATCATGCTGTTGAGAACACACAGGTGTACAATGAAGGTTCTAATTTAATGAATAATGCTGCCATAGCCAATGCTAGCAGTTTAAGAGATGACCTAGGAAACAGGCAACAAAATCCAGTTAATCGTAACCTTTCCTTTTGGAAAGATGCTAATTCTTCAATGGACCTAAAAGAAAGTGGTTTTATGGCAAAATACCAGCATCATATTGATAAGGGGTCTCAAATATTGGAATCTGGGAACAGTTGTCTAGAAAAGGGTGCTACTGAAATGAATGAGGTTGAAAATTCAAATGCTAGTGATACACACACTTCTTCTGGAAGCAAACAAAAAGGAGGTAATACCATTCGGAAGCCATCTGTAACGTCTCGAAGATTCCAGTACCATCCAATGGGGAATTTAGAAATGGATGTGGAACCTTCTTTTGGAACAAGTCATGTTACACAAGCACAGGCTCATGTGCAGCAGAACTCTCATGGATTTAAAGGCGGTGAGCCGAGTAATCTTAGGCAATCCAAATCTGGAACAGAGGGGAATGCTATTGAAGTTGAAAAGAGTGAAATGAGAGCCTTTGGAGATTTACCTTCTAAAAGAATGCTTCCACCTTTTGGATCTCGTTTTTCTTCTTCTTTGGACAAACTTGCTGGTCACGATCCACGAAATGTGGCATTCCCACCAAGCCAAAATATGCTCGAGCTTCTTCACAAAGTGGATCAACCAAGAGAACATAACAATGCAACACGTAGTCCCTCTTACCGAAATCATTCTTCAGAAATGGGTGAAGCAGAAACTTCTGAGGGATCAGTTGGTCAAACACCACGAAATCAGTCGTCTGATTCTCAAGTTTTTGGTTTGCAACTGGGTCCCCCACAACGATTGTCCATGCAAGATGCTGCTTTATCTTCTCATTCCTCCTTGCCCATGGTTATGAATTCAACACATTCTACTTCTGAATCAGGAGAACGTGGCCATCTGTTGTTGCCTCCTGTAGCCTCTAAACAGAGGGATTTGAGAAATAATATAACTGGGCCTTCCGGACATAATGTCAATAAAATCCCTCATATGAATGCTCCAGGAAACTTGGCTGCAGCTTCTCAATCTGCCTTTCCTTATCCTAGAAGTCATCTTCAAAATCAGCACCTTGTTGCCAATCACTCTGCTAATGTGTTTTCTGATAGAGTTGGTATGCATTCAAAATATTTTGATAACTCTTCTGAGCGAGTTGAAAATAGTCATATGGCGTCGACAGATATTTCCAGAAGCGGCCTCCAAATGAACCTAGTTTCTTCTGCTGACACATCTCAGCAAAGTAGTGGCGATATATCTAATGCCCAAAATCTCCCCCAGCTTGCGCAGGAATTGGGTTCTGTGTCTACATCTCAACATGCCGCTTTCTCAAAAGTCTCATCTAATGAGTGGGCAAATGTCACAAACCAGAAACATTCACTACATGCAGATTCATCAAAAGCTGCCTCAGATTTGTTCAAATCTCGTATGCACATGGACAACGCGGATAAGAGCTTTTCAGGACAAAAGGAGATGGACAGTCGAGAGAAATTGGAACTAGAGGCTATGGCCCATGGTGAAAATTCCGTCAATCTGCAAAACATTATTGGGAGAGAAAAGCAAATGCAAGAAAGCCCTGGCAAGCAAATTTCAGGTGGGAAGAGTGAAATTTCCCCGCAGGCCACAACTGCATCAGGTGGTCTGGAATCTGCTGGACATCACTCATTAGGTGCATCTCCATCAAATTCCATGGGTACTCGAGGAAATATTGAGACTGTTGGTCATTCTATGCATCCAAATATTAATTCGCAGCAGCATCACACATTACTGCATCAAATGCAGGCTGTGAAAAATGCAGATAATGACCCGACTAACAGGAGTGGTAAGAGATTTAAGGGTTCGGATTGTGGTTTAGATTCTCAGCAAGTTGCAATGGATGGGGGCCAACTTTTACCGCGTGGACACAGTAATGCTGTCAGAGAGTCCTTGCTTAACCATGCTTCCATTTCTCATGTAGATGCAGCAGCGGTTAATTTTTCATCAAAGAAGGGGGATGCCTACATATCATCTAGTAGTGACATTGCATCTTCTGTGAGAAGCGAGCATTCTCAAATCAGTCCTCAGATGGCACCATCTTGGTTTGATCAATACGGAACCTTCAAAAATGGACAAACTTTAACAGTATTTCCTGGATCTAAAAATGCAACCATAAAGCCACCTTTGGATCAACCTTTGATTGTTGAAAGGGGCCCTGATTTCAATGCTCAAAATTCTGTGAAGCCAGCAAATTCTTCCGCTGATGGTAGTGAGCACAATAATGCACGGGAAATTTCAACTCTCATGTCGATAGAACACAGAAATTTCTCAGCAGGTCAACCTTTGCCCCTTGATTTCATTAATCAAAGTTTGGCTGCTGCAAGACCAAAAAAGCGCAAAAGCTCTGCACCTGAACTGTTATCATGGAATGCAGAAATGACACAGAGCTTTAGACGGCTGCATGATATAAGCATGGCAGATGTTGACTGGGCTCAGGCAACCAATCGGCTGATTGAGAAGAGAGAAGATGAAGTTGAAATGATCGACGATGGAATAATGATGAAATTGAAGAGGAGGCTTAACTTGACCACACAGCTTGTACAACAACTCCTTCGTCCTCCTCCTTCTGCAACTCTCTCTTCAGATGCCAGTTTACATTATGAGAGTGTGGCTTATCTTGTTGCGAGGCTAGCATTAGGGGATGCTTGTAATATAGTTTCTTTCACAGGAACTGACAATGCGGTCCATCCAGAAAGCAGAGATCCCCTTCCTGACAGACCTAAGGTACCGGGGAAATCTGATGTTCACAAAATTATTGAAGTTGTGGAGGAGTTCACGAAACGGGGACAGAAGATGGAAGATGATTTACTGAGGGTGGAGAAAAGAGCTTCAATCTTAGATTTGAGAGTGGAATGCCAGGATCTCGAAAAGTTCTCTGTTATCAATCGGTTTGCCAAGTTCCATAGCCGAGGACAAGTTGATGGAGGTGAGGCCTCATCATCCTCTGATTTAACCGCAAGTTCTCAGAAATCTTGCCCCCAGAGATATGTTACTGCACTTCCCCTTCCTAGAAATCTTCCTGACAGGGTACAATGTCTTTCACTTTAA 5322 42.54 MPGNEVGDRVHNFFGQENLYQGQHQSQAADGSWAGLNNNLWVRNQREINSPFIANLKNYNAHQPDSGGVGQPSHSLHGLNFSQSYINSEIGRSESQNQQQALNGYAAGQQLFHPRQIEANFLGADAVSDRHLTSRGLSIHEAQQVNNPELSKKNVARLETTDSPVNFDFFGGQQQLSGRNPSVSQILPKQQLGNPDMQLLQQQAMFSHIQELQRQHQYQQQEARQHGSMNQISSKPGAGNHSAALIDGIPVNELSTSPWQPEHMGSNTNSLQHSLSTPMQGPSSGFVFPSEQQQALRMMGLIPEQVDQSLYGVPISSASSFLGSNSLIPTDKPAMQQLSVSNNPVSGSHYTAYPDQVSMQDGMVVRQDFQGKSMFGMSASQGLNGGLNSENSQHVNLQHRHASMQEFSGRQEFDGRSELSQEKTMAQIAPSQNVATLDPTEEKILYGSDDNLWDAFGRSDNITAGGYSMADGSDFNSGYSFLQSGSWSALMQSAVAETSSGDMGVQEGWGGVNFNNSGPPNGNQQHSEANDSGKLQPVWVDNNLQTLNARHASVSAEANSKPNNYINSANVPSFQQPGQKSFFQQTESFQNSSAQNSTPSSLEGERKWVDRNLQPKSHAEGRNLSENEGNTSGVEINANNLSGSWLRQQSVATYNSQPSKPNGWSYIEPMFSHEGNNMKNHENHNMSQSSQGDHKRSIREEMGSSAIFKQNHDSISNPNDELQHANHAVENTQVYNEGSNLMNNAAIANASSLRDDLGNRQQNPVNRNLSFWKDANSSMDLKESGFMAKYQHHIDKGSQILESGNSCLEKGATEMNEVENSNASDTHTSSGSKQKGGNTIRKPSVTSRRFQYHPMGNLEMDVEPSFGTSHVTQAQAHVQQNSHGFKGGEPSNLRQSKSGTEGNAIEVEKSEMRAFGDLPSKRMLPPFGSRFSSSLDKLAGHDPRNVAFPPSQNMLELLHKVDQPREHNNATRSPSYRNHSSEMGEAETSEGSVGQTPRNQSSDSQVFGLQLGPPQRLSMQDAALSSHSSLPMVMNSTHSTSESGERGHLLLPPVASKQRDLRNNITGPSGHNVNKIPHMNAPGNLAAASQSAFPYPRSHLQNQHLVANHSANVFSDRVGMHSKYFDNSSERVENSHMASTDISRSGLQMNLVSSADTSQQSSGDISNAQNLPQLAQELGSVSTSQHAAFSKVSSNEWANVTNQKHSLHADSSKAASDLFKSRMHMDNADKSFSGQKEMDSREKLELEAMAHGENSVNLQNIIGREKQMQESPGKQISGGKSEISPQATTASGGLESAGHHSLGASPSNSMGTRGNIETVGHSMHPNINSQQHHTLLHQMQAVKNADNDPTNRSGKRFKGSDCGLDSQQVAMDGGQLLPRGHSNAVRESLLNHASISHVDAAAVNFSSKKGDAYISSSSDIASSVRSEHSQISPQMAPSWFDQYGTFKNGQTLTVFPGSKNATIKPPLDQPLIVERGPDFNAQNSVKPANSSADGSEHNNAREISTLMSIEHRNFSAGQPLPLDFINQSLAAARPKKRKSSAPELLSWNAEMTQSFRRLHDISMADVDWAQATNRLIEKREDEVEMIDDGIMMKLKRRLNLTTQLVQQLLRPPPSATLSSDASLHYESVAYLVARLALGDACNIVSFTGTDNAVHPESRDPLPDRPKVPGKSDVHKIIEVVEEFTKRGQKMEDDLLRVEKRASILDLRVECQDLEKFSVINRFAKFHSRGQVDGGEASSSSDLTASSQKSCPQRYVTALPLPRNLPDRVQCLSL 1773
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25443765 25454259 + MELO3C002018.2.1 Cme12g01954 345171

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01954 1773 MobiDBLite consensus disorder prediction 1482 1497 - -
Cme12g01954 1773 MobiDBLite consensus disorder prediction 652 698 - -
Cme12g01954 1773 MobiDBLite consensus disorder prediction 552 603 - -
Cme12g01954 1773 PANTHER DENTIN SIALOPHOSPHOPROTEIN-LIKE PROTEIN 1 1773 - -
Cme12g01954 1773 MobiDBLite consensus disorder prediction 604 623 - -
Cme12g01954 1773 MobiDBLite consensus disorder prediction 878 903 - -
Cme12g01954 1773 PANTHER DENTIN SIALOPHOSPHOPROTEIN-LIKE PROTEIN 1 1773 - -
Cme12g01954 1773 MobiDBLite consensus disorder prediction 501 534 - -
Cme12g01954 1773 MobiDBLite consensus disorder prediction 815 846 - -
Cme12g01954 1773 MobiDBLite consensus disorder prediction 1651 1670 - -
Cme12g01954 1773 MobiDBLite consensus disorder prediction 510 534 - -
Cme12g01954 1773 MobiDBLite consensus disorder prediction 1345 1366 - -
Cme12g01954 1773 Coils Coil 1680 1700 - -
Cme12g01954 1773 MobiDBLite consensus disorder prediction 815 849 - -
Cme12g01954 1773 MobiDBLite consensus disorder prediction 258 281 - -
Cme12g01954 1773 MobiDBLite consensus disorder prediction 1656 1670 - -
Cme12g01954 1773 MobiDBLite consensus disorder prediction 878 904 - -
Cme12g01954 1773 MobiDBLite consensus disorder prediction 552 636 - -
Cme12g01954 1773 MobiDBLite consensus disorder prediction 1732 1748 - -
Cme12g01954 1773 MobiDBLite consensus disorder prediction 1267 1327 - -
Cme12g01954 1773 MobiDBLite consensus disorder prediction 1478 1497 - -
Cme12g01954 1773 MobiDBLite consensus disorder prediction 962 1011 - -
Cme12g01954 1773 MobiDBLite consensus disorder prediction 968 1011 - -
Cme12g01954 1773 MobiDBLite consensus disorder prediction 1729 1748 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01954 - - - csv:101222546 3322.72
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme12g01954 Cme-Chr12:25443765 Cme09g00217 Cme-Chr9:1695358 1.22E-58 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g640 Blo04g00787 Blo16g00173 . . . Bpe13g00307 Bma06g00157 . Cmo13g01131 . . . . . . Cpe20g00066 . . . . . . . . . . . . . . . Cone2ag0816 Cone16ag0198 Cone13ag0041 Cone19ag0047 Lsi02g00108 Csa01g00588 Chy12g01510 Cme12g01954 . . Bda11g01717 Bda14g00869 . Bpe15g00586 Bma03g00846 . Sed08g2109 . . Cma13g01082 . Car13g00920 . . . Bhi08g01103 Tan05g2375 Cmetu12g1694 Lac10g0137 . . . Cla04g01165 Cam04g1224 Cec01g1735 Cco01g1781 Clacu04g1251 Cmu04g1229 Cre01g1525 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003705 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 4 2 1 46