Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01961 ATGTGTTGCTTGAGAGGGGAGAGAGAGACAGACAGAGAGAGAGAGAGAGCCTACATGAGTCATTGTGTAGTTCCAAAATGGAATCTGAGCCACGAAAGACAAGAGCAAGTCGAAGAAGAGGAAGAAAAGAGATCTTTTCACGTGCCTGCTGAGAAGAATCAACACAGTACCACCACTAAACCTCTTGTCCCATTCTACCAGCAAATGGCAAAGCAAGGAATTACAGAACTAACATGGCAAAATGGGCAACTCGCTCTGCATGGGATTGATGGGCTACAGCCGACAATCCCACCAAAGCCCACATGGAACCGAGCCAATGACACGTTGGAGTCCGTAGTCAATCAAGCTAAACTCCAAACTCAAGGCCCAGACTTGATCCAGCAAGGCGAGCCAGTGGTCCATACTGGCCGCACCCTCGCACCCCCTGGCGCGAATGGGAAATGGGTTGAGAGGGGGAACCAAGAACCGTCGGCGAGAAAAAGAACACGATCAACTTCCGATTATGGTGGGAAAAATGTCAGCACAAGCAACAACAATAACAACAACAACAGCAACACTATGCAAGTTGACCACGGTGATCACAGTGTGTGTGGAAGTGCGAGTGCAGCGTTTTGTAGGGACAATGAGACTACTTTGATGACATGGGCTTCCTTTGATTCTCCTCGAAGCTTGAAAACTAAATCCATTGATGAAGATTCTGCTTGTCATGTTGAATCGGAAAATCAAGAGGAAGAACAAGATACAAAGCGTGTAGCAAATCGTTCTCATTCAGCTAGACGAAGTCGAGCTGCTGCTGTACATAATCAATCAGAACGGAGGAGGAGAGACAGAATTAATGAGAAGATGAAAGCCCTGCAGAAGTTGGTGCCAAATGCAAGCAAGACTGATAAAGCTTCGATGTTGGATGAGGTAATTGAATACTTAAAGCAGCTTCAAGCACAAGTTCAGTTCATGAGTGTGAGGAGTATGCAACAAATGATAATGCCTATAGGAATTCAGCAACAACTTCAAATGTCGCTCCTAGCTCGTATGGGCATGGGGGTCGGTCTAGGCATGGGAATGGGGATGCTCGACATGAGCGGTATGCCACGTTCAGCCCCGCAAGCACTTCCTCCACTCATCCATCCTACATCCGTGCCCTCTACACCTCCTGCATTTGTTCCGCCCCACTTCTTGTTACCTCCTGCAATTCCAAGGCAGGATCCAACACAAGCCAAGCCTGCCACCAATGGCTCTGTTGATCCATTTTGTGCCTTTCTAGCCCAAACAATGAATATGGATATTTACAACAAAATGGCAGCTTTCTATCGCCAACAAGCTAATGAGATATCAGGGAAGGAAATGAAGGTTGGGGTGTTAGATTGA 1365 47.03 MCCLRGERETDRERERAYMSHCVVPKWNLSHERQEQVEEEEEKRSFHVPAEKNQHSTTTKPLVPFYQQMAKQGITELTWQNGQLALHGIDGLQPTIPPKPTWNRANDTLESVVNQAKLQTQGPDLIQQGEPVVHTGRTLAPPGANGKWVERGNQEPSARKRTRSTSDYGGKNVSTSNNNNNNNSNTMQVDHGDHSVCGSASAAFCRDNETTLMTWASFDSPRSLKTKSIDEDSACHVESENQEEEQDTKRVANRSHSARRSRAAAVHNQSERRRRDRINEKMKALQKLVPNASKTDKASMLDEVIEYLKQLQAQVQFMSVRSMQQMIMPIGIQQQLQMSLLARMGMGVGLGMGMGMLDMSGMPRSAPQALPPLIHPTSVPSTPPAFVPPHFLLPPAIPRQDPTQAKPATNGSVDPFCAFLAQTMNMDIYNKMAAFYRQQANEISGKEMKVGVLD 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25490076 25494806 - MELO3C002012.2.1 Cme12g01961 345178

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01961 454 MobiDBLite consensus disorder prediction 236 254 - -
Cme12g01961 454 PANTHER TRANSCRIPTION FACTOR PIF7 21 443 - -
Cme12g01961 454 MobiDBLite consensus disorder prediction 31 57 - -
Cme12g01961 454 Pfam Helix-loop-helix DNA-binding domain 266 312 IPR011598 GO:0046983
Cme12g01961 454 MobiDBLite consensus disorder prediction 137 191 - -
Cme12g01961 454 Coils Coil 268 288 - -
Cme12g01961 454 CDD bHLH_AtPIF_like 262 323 - -
Cme12g01961 454 MobiDBLite consensus disorder prediction 236 275 - -
Cme12g01961 454 MobiDBLite consensus disorder prediction 167 191 - -
Cme12g01961 454 MobiDBLite consensus disorder prediction 31 50 - -
Cme12g01961 454 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 262 311 IPR011598 GO:0046983
Cme12g01961 454 Gene3D - 257 322 IPR036638 GO:0046983
Cme12g01961 454 SMART finulus 268 317 IPR011598 GO:0046983
Cme12g01961 454 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 260 323 IPR036638 GO:0046983
Cme12g01961 454 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 21 443 IPR031066 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01961 - - - cmo:103489941 817.764
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g02063 Cme-Chr3:28110755 Cme12g01961 Cme-Chr12:25490076 1.91E-27 dispersed
Cme08g00583 Cme-Chr8:3686402 Cme12g01961 Cme-Chr12:25490076 3.25E-26 dispersed
Cme12g01961 Cme-Chr12:25490076 Cme05g01833 Cme-Chr5:27184307 9.27E-19 dispersed
Cme05g00742 Cme-Chr5:9047899 Cme12g01961 Cme-Chr12:25490076 6.04E-12 transposed
Cme11g02233 Cme-Chr11:29554000 Cme12g01961 Cme-Chr12:25490076 1.38E-40 transposed
Cme12g01961 Cme-Chr12:25490076 Cme02g01852 Cme-Chr2:25194829 4.28E-51 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g623 . . . Bda15g00616 . . . Bma12g00978 . . . . Car10g00201 . . . . . . . . . . . . . . . . . . . . . . Lsi02g00102 Csa01g00581 Chy12g01515 Cme12g01961 . Blo15g00325 . . Bpe07g00768 . . . . . . . . . . . Cpe18g00775 Bhi08g01118 . . . . . . Cla04g01172 Cam04g1229 Cec01g1740 Cco01g1786 Clacu04g1256 Cmu04g1235 Cre01g1530 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007472 1 3 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42386 PF00010 HLH 4.10E-14 No_clan Cme TF