Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01966 ATGGTTTCAGAGAGAGTAAAGAATGGTGTAAAAGTTGATGATCATCAACTATTCGTGAACAGTACAAACATAAAGAAGGTTTGTGTAATTGGAGCTGGAGCTTCAGGCTTGGTAGCAGCCAGAGAGCTAAGAAAAGAAGGCCACAAAGTAATCGTTTTCGAGCAAAACGACGACGTGGGTGGCCAATGGTTATACGATCCAAATGTACAAAATGAACATCCTTTAGGAAGATCCAAATTCCTCAATGTTCATAGCAGCATTTATTCTTCTTTAAGGATTGCTTCTCCAAGAGAAATCATGGGTTTCTCTGATTTTCCCTTTGTTGCTAAGAAATTTGCGCATGATTCTAGGAGATTTCCTGGCCATTATGAGTTGTTTTTGTATTTGAAGGATTTTTGTCGTTGTTTTGATTTGAATCAACTTATAAGGTTTAATACTAGAGTTGAATATGTGGGTATTATCGATCATAAGAATAAAAATAATATTGTTGTTGGTGATATTCAATGGGTTGTTAGAAGTAGAGATTGTAAGTGTAAGCATAAGAAGATTAATGGGGATGATGATGATGAAGATCTGATTGAAGAAGTTTTTGATGCTGTTGTTGTTGCTAATGGACATTATTCTCATCCTAGATTGCCTACCATTAAAGGAATGGACAAATGGAAGAGAAAGCAAATTCACAGTCATGTTTATAGGGTTCCCGATCCATTTTGCAATGAGGTAGTGGTGGTGGTGGGAAACTCTCAAAGTGGGCAAGACATATCGCTAGATCTAATAGAAGTGGCAAAGGAAATACATTTGAGCACAAAATCCTTAGACACTGTTACTCAAGGTTTATCCAAAGTCATTCAAAAGTATCAAAACTTGCACCTTCAACCACAGATTGAATCTCTTGAAGAAGATGGGAGAGTGGTGTTTGTTGATGGATCTTCTATAGTTGCTGATACTATTTTATATTGCACTGGGTATTCATACGCGTTTCCATTTCTTGACACGAAAGGAATAGTTGTTGTGGATGATGATCGAGTGGGGCCTTTGTACGAGCATACATTTCCCCCTTCCTTGGCTCCCTCACTTTCATTTATAGGCATTCCACGGAAGCTCATAGGTTTCCCTTTCTTTGAATCACAAGCAATATGGATAGCTCAACTGCTGTCTGGGAAAAGGACATTGCCATCATATGATGATATGATGCAATCCATCAAACAGTTTTATCACTCAAAAGATATTGCTGGCATCCCAAAGCATAACACCCATGATTTAGCTGAATTTGAGTATTGTGACAGATATGGTGATAACGTCGGATTTCCACATTTGGAGGAATGGAGGAAAAAACTGTGTGTAACAGCTATTATAAATTCCTCAAACAATCTCGAAACGTTTCGAGATTTGATGGATGATGATGAGGATCTTCAAGAAGCCTATCAAAGCCCTCATTTCACTCAACTTGGAGCTCAAGTTTTTCCTTTGGACCACATGTAA 1482 37.99 MVSERVKNGVKVDDHQLFVNSTNIKKVCVIGAGASGLVAARELRKEGHKVIVFEQNDDVGGQWLYDPNVQNEHPLGRSKFLNVHSSIYSSLRIASPREIMGFSDFPFVAKKFAHDSRRFPGHYELFLYLKDFCRCFDLNQLIRFNTRVEYVGIIDHKNKNNIVVGDIQWVVRSRDCKCKHKKINGDDDDEDLIEEVFDAVVVANGHYSHPRLPTIKGMDKWKRKQIHSHVYRVPDPFCNEVVVVVGNSQSGQDISLDLIEVAKEIHLSTKSLDTVTQGLSKVIQKYQNLHLQPQIESLEEDGRVVFVDGSSIVADTILYCTGYSYAFPFLDTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFIGIPRKLIGFPFFESQAIWIAQLLSGKRTLPSYDDMMQSIKQFYHSKDIAGIPKHNTHDLAEFEYCDRYGDNVGFPHLEEWRKKLCVTAIINSSNNLETFRDLMDDDEDLQEAYQSPHFTQLGAQVFPLDHM 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25518334 25521649 + MELO3C002007.2.1 Cme12g01966 345183

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01966 493 PANTHER FLAVIN-CONTAINING MONOOXYGENASE FMO GS-OX-LIKE 8 20 484 - -
Cme12g01966 493 Gene3D - 26 463 IPR036188 -
Cme12g01966 493 SUPERFAMILY FAD/NAD(P)-binding domain 23 266 IPR036188 -
Cme12g01966 493 Gene3D - 214 320 IPR036188 -
Cme12g01966 493 PANTHER DIMETHYLANILINE MONOOXYGENASE 20 484 - -
Cme12g01966 493 Pfam Flavin-binding monooxygenase-like 25 272 IPR020946 GO:0004499|GO:0050660|GO:0050661
Cme12g01966 493 Pfam Flavin-binding monooxygenase-like 289 406 IPR020946 GO:0004499|GO:0050660|GO:0050661
Cme12g01966 493 PRINTS Flavin-containing monooxygenase (FMO) signature 25 41 IPR000960 GO:0050660|GO:0050661
Cme12g01966 493 PRINTS Flavin-containing monooxygenase (FMO) signature 49 73 IPR000960 GO:0050660|GO:0050661
Cme12g01966 493 PRINTS Flavin-containing monooxygenase (FMO) signature 307 334 IPR000960 GO:0050660|GO:0050661
Cme12g01966 493 PRINTS Flavin-containing monooxygenase (FMO) signature 372 385 IPR000960 GO:0050660|GO:0050661
Cme12g01966 493 SUPERFAMILY FAD/NAD(P)-binding domain 277 448 IPR036188 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01966 - - - csv:101221607 969.148
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02609 Cme-Chr6:33344745 Cme12g01966 Cme-Chr12:25518334 1.18E-132 dispersed
Cme06g02610 Cme-Chr6:33348635 Cme12g01966 Cme-Chr12:25518334 6.71E-131 dispersed
Cme12g01966 Cme-Chr12:25518334 Cme02g00334 Cme-Chr2:2737297 1.17E-15 dispersed
Cme12g01966 Cme-Chr12:25518334 Cme04g00923 Cme-Chr4:12360411 3.04E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g609 Blo04g00784 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00096 . Chy12g01520 Cme12g01966 . . . Bda14g00865 . . Bma03g00842 . Sed08g2095 . . . . . . . . Bhi08g01127 Tan05g2408 Cmetu06g2174 . Hepe07g1737 . . Cla04g01176 Cam04g1233 Cec01g1744 Cco01g1790 Clacu04g1261 Cmu04g1240 Cre01g1534 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009615 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 33