Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01967 ATGAAGAGGGAATCACGTAAGCATGATATGTGCATCACGACAACTCAGTCTGATTTTTATAAGTCTCGGGTCTCTGCATTGTGTGCTCAGGATGCACGTAACTTCTCTGTATACAGTCAATTATTTATTTCGGGTGAAAAAACGACCTCATTACTTTCAAGTTTAGGGAAGAACACTCAAACAGGTTCTGACTCCCCTCTGAATGGAATCAGTTCAAAGAATCCTTATTATTCAGAATCTAAGAGTAAGATTTTGAGCAAAGGGATGTTTGATCTTGAACTTCCAACTGACAGCAATTACTTGAATAGCCAAGATGAATTGACAAATGTGCCTGAGATGTCAAGCTGTCATCTCAAGAGAATGCCTGAGGTCGTTCATATTAGTGATAGACAATCCAAGTATGATTCATTATTAGAGAAAACCAAGGTTTCGGTTGATTTAAATGATCCTCCTAACTCTGTGGAAGAATCGGCCTGTAGATCCATTGATTCAGTGAATGCTTCTGGCCACAGGGAGATCCTTTTCCATGATTTATATGGCAAAGCCAATTCAAAGTTGTTTGGTTTCTCACAGCAAGATAGCAATGGAAGAAAGAATGGACTCTCTACCAAGGGCTATTCTGAACCAATTAGCTTTTATGACAGAAGCCAAAGATATCAACCCGACAAAGAAATTGCAAATTCAAGTCTGTCATCATCCACTACATCTTTGACAAAATCTGCACAAGGCCCCATAGGACACCATATTTTAGATTCTGAGAGTTCCAAAACGTTGATAGAAAATGCAATGCTTGCTAAAGTTGATCTCTGTTGTGTTAAGAACTTGAGGCCTAGCTTTGGGTCTGATAGTGTCAGCCCCGTTGAAGGAAGTTTCTGTAACAGCTCCAAGTCCGAGATTGTGAAAGAAGAAACTCGCCCATTCTTCAAGGCTTCTGCAAATTGGATGGAAGGTCAAATTGATCTCAACGTATGCATAAATGAAGAGTTTTTGGCAACACCTTGTTGCTCCACTGAAATGAAACTGGAGGTACCCGTGAGTCCAGGAAAGGAAAAACACTCTTCAACTGCAGGAGAGTTTGGTGATAACCAATTGGAGTCACATTTTCTAGAGTCGGTTGAAATCGAAGATGACGGAAAATCGTTGGAGGACCTCAGTACGATTGCAGCTGAAGCTTTGGTTTCTATTTCATCATCTGTGGCTCAAAATTGTCATAAAATCACCAGTTGTTCGTCTGTTCAACCTTCATTTGAATCTTTATGCTGGCTTGCTGAAATAGTTTCTTCAATGGGAGCTGATCCAAAGAAGGCTGAATTAGCCTTGAAATGCAAGGATACTGACTCAGTGGAGCTTTTGGCAGATTTCATGGATGAATTTGAGGTCATGACATTGAAGTTGAAAGAAATAGAAGAGAAAGGGTGTTCCTTGACAGCAAGTAACCATCAAGAGGAAGCAGTAAAAAACGTTTCTTCACCTTCATGTCAACCAGGGAAGGTGCGTGCAAGGCGGGGACAGCGCAAAAATTTCCAGACAGAAATTCTTCCAAGTCTTGCAACTTTGTCGAGGTATGAGGTTACAGAAGATATTCAGACGATTGGAGGCCTGATGGAAGTTGCAAGTTCTCATTCGATCGCTGATGTAACGAAACCTACAAGTAGAGGTAGAATGACAGGGACGAGAGGGAAGAGACGGTTGTGTGATTCATCTTCAAAAACTACAGAGACTGTTATAAGGTCAAGCATGGATCGAGTAAGCAGTGACAATGAACGAGATAACAAAGAAAGAAAGGTAATAGTTTGGGGAAATATTACTCGGCGACGGAGAGGGCAGAGATATCCAGCTCGTAATAGAAAAATTATCTTAGCACAAGTATAG 1872 40.87 MKRESRKHDMCITTTQSDFYKSRVSALCAQDARNFSVYSQLFISGEKTTSLLSSLGKNTQTGSDSPLNGISSKNPYYSESKSKILSKGMFDLELPTDSNYLNSQDELTNVPEMSSCHLKRMPEVVHISDRQSKYDSLLEKTKVSVDLNDPPNSVEESACRSIDSVNASGHREILFHDLYGKANSKLFGFSQQDSNGRKNGLSTKGYSEPISFYDRSQRYQPDKEIANSSLSSSTTSLTKSAQGPIGHHILDSESSKTLIENAMLAKVDLCCVKNLRPSFGSDSVSPVEGSFCNSSKSEIVKEETRPFFKASANWMEGQIDLNVCINEEFLATPCCSTEMKLEVPVSPGKEKHSSTAGEFGDNQLESHFLESVEIEDDGKSLEDLSTIAAEALVSISSSVAQNCHKITSCSSVQPSFESLCWLAEIVSSMGADPKKAELALKCKDTDSVELLADFMDEFEVMTLKLKEIEEKGCSLTASNHQEEAVKNVSSPSCQPGKVRARRGQRKNFQTEILPSLATLSRYEVTEDIQTIGGLMEVASSHSIADVTKPTSRGRMTGTRGKRRLCDSSSKTTETVIRSSMDRVSSDNERDNKERKVIVWGNITRRRRGQRYPARNRKIILAQV 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25521883 25525120 - MELO3C002006.2.1 Cme12g01967 345184

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01967 623 PANTHER - 1 622 - -
Cme12g01967 623 Coils Coil 451 471 - -
Cme12g01967 623 Pfam Plant protein of unknown function (DUF863) 317 612 IPR008581 -
Cme12g01967 623 PANTHER GB|AAF67766.1 1 622 - -
Cme12g01967 623 MobiDBLite consensus disorder prediction 55 74 - -
Cme12g01967 623 MobiDBLite consensus disorder prediction 225 242 - -
Cme12g01967 623 MobiDBLite consensus disorder prediction 225 248 - -
Cme12g01967 623 MobiDBLite consensus disorder prediction 547 590 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01967 - - - csv:101221366 1130.93
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g00377 Cme-Chr10:2411609 Cme12g01967 Cme-Chr12:25521883 5.24E-27 wgd
Cme12g01967 Cme-Chr12:25521883 Cme03g01435 Cme-Chr3:23717753 2.04E-21 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g606 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00095 . . Cme12g01967 . . . . . . . . Sed08g2094 . . . . . . . . Bhi08g01130 Tan05g2411 . Lac10g0124 Hepe07g2485 . . Cla04g01177 Cam04g1234 Cec01g1745 Cco01g1791 Clacu04g1262 Cmu04g1241 Cre01g1535 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005746 1 3 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 2 1 1 1 1 1 4 2 39