Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01969 ATGGCAAAAGTTGGGAGTTTTTGGATATCAAAGAAAGCAAAGCAAGAGATCACCACCATCACTGCTCAACTCTCATCATTCTCCAATACTATAGAGGACAAGGCAAAAATGGTACTTGACAAGATCAAAGGGAAGCCGCAGAAATCACTGCCAGAGCTACTCCGAGAGCACAATCTTCCGGCGGGATTATTCCCAAAGAACATAATCTGCTACGAATTGGATGAGTCGAAAGGGAAACTGGTGGTGCATTTGGCGTCGGCGTGCGAGGTAAGCTTCAAGGACTCGTCAATCGTAAGATACGCTACTCGCGTAAAGGCGAAGCTGTCGAAAGGGAAATTGAGTTCCATTGAAGGAATGAAGACCAAAATCATGGTGTGGACCAAAGTCACCACCGTCTCCGTCGAGAGTTATAAGTCGGAGAAGGTTTGGTTTGTGGCCGGAATCAAGAAATCGCGACTCAAAGACGCATATGAAATGCCTCGTCAAGCTCTTAGAGTTGACGATTTCTAA 510 45.88 MAKVGSFWISKKAKQEITTITAQLSSFSNTIEDKAKMVLDKIKGKPQKSLPELLREHNLPAGLFPKNIICYELDESKGKLVVHLASACEVSFKDSSIVRYATRVKAKLSKGKLSSIEGMKTKIMVWTKVTTVSVESYKSEKVWFVAGIKKSRLKDAYEMPRQALRVDDF 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25527518 25528327 + MELO3C002004.2.1 Cme12g01969 345186

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01969 169 PANTHER DUF538 FAMILY PROTEIN 6 169 - -
Cme12g01969 169 Pfam Protein of unknown function, DUF538 52 158 IPR007493 -
Cme12g01969 169 PANTHER T31J12.3 PROTEIN-RELATED 6 169 IPR007493 -
Cme12g01969 169 Gene3D - 28 169 IPR036758 -
Cme12g01969 169 SUPERFAMILY At5g01610-like 2 168 IPR036758 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01969 - - - csv:101220576 323.168
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01327 Cme-Chr2:19175158 Cme12g01969 Cme-Chr12:25527518 9.77E-08 transposed
Cme08g02176 Cme-Chr8:27802393 Cme12g01969 Cme-Chr12:25527518 1.80E-51 transposed
Cme10g00378 Cme-Chr10:2433749 Cme12g01969 Cme-Chr12:25527518 1.84E-77 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g596 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone2ag0824 . . . Lsi02g00093 Csa01g00574 Chy12g01522 Cme12g01969 . . . . . . . . . . . . . . . . . Bhi08g01133 Tan05g2415 Cmetu12g1066 Lac10g0122 . . . Cla04g01179 Cam04g1235 Cec01g1746 Cco01g1792 Clacu04g1263 Cmu04g1242 Cre01g1536 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002962 1 2 1 1 1 2 1 2 2 2 2 2 2 2 2 2 2 3 1 2 2 2 1 2 2 2 2 2 2 2 54