Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme12g01970 | ATGGGGTGTGTGAACACGAAGCAGGCGGTGTCCGTCACGCCTGCATTCGATCATTCCGGCGTGTTTCGAGATAATGAATCAACGGCGGTGGGGAACTCGGGTCGGAGCCGACTTGGGTTGATGGGGGAGATTGAGAAGGTTTCGAAGCCCAAGGCTAAAGTGAAGAAGAAGAGTTCCAGTGAGTTTAATGGGGTTGGGAGTGAGTTTGGTGAGTCGGGGAGAGCGAGTTCAAATGGCGGAGGAAATGAAACTTTGAGCTTCAGATTGGGGAATTTTAACAAGTATATGGAAGGTGAACAAGTGGCGGCGGGTTGGCCGGCCTGGCTTAGCGCTGTCGCCGGTGAGGCCATTCAAGGTTGGGTTCCACTCCGGTCCGATGCCTATGAGAAGTTGGAAAAGATTGGACAAGGTACATATAGCAGTGTATTCCGAGCTCGTGAACTCGAAACGGGAAGGATCGTTGCTTTAAAGAAGGTTCGATTCGACAATTTTGAGCCTGAAAGTGTTAGATTTATGGCACGAGAGATCATGATTCTCCGCACGCTCGATCACCCTAACATCATCAAATTGGAGGGCTTAATTACATCTCGTTTATCATGTAGCATTTACCTTGTATTCGAGTACATGGACCACGACATTACTGGACTCTTGTCCTGTCCTGATATCACTTTTAGTGAATCACAGATTAAATGCTACATGAAACAATTGTTATCCGGGCTTGAGCATTGTCACTCACGTGGTGTGATGCATCGGGATATTAAAGGATCTAATCTTCTAGTCAATAATGAAGGAGTATTGAAGGTGGCTGATTTTGGATTGGCAAACTTCTGTAATTCTGGGCACCGGCAACCTCTAACAAGTCGTGTTGTCACTCTGTGGTATCGCCCTCCTGAACTTCTACTGGGTTCAACAGACTATAATGCATCTGTGGATCTTTGGAGTGTTGGCTGTGTTTTTGCAGAACTTCTAGTTGGGAAACCTATTCTTCAAGGAAGAACAGAGGTGGAACAGTTACACAAGATCTTCAAGCTTTGCGGCTCTCCTCCTGATGAATACTGGAAAAAATCTAAACTTCCTCATGCCACTTTGTTCAAGCCGCAGCATCCTTATAATAATTGTTTACGGCAGACCTTCAAAGATCATCCTTCAACGACTGTGAACTTGTTAGAAACTCTTCTTTCCGTTGAACCATACAAGCGTGGAGTTGCCTCCTCGGCTCTCACATCTGAGTATTTCAGTACCAAACCGTATGCATGTGATCCATCAAGCATGCCGATATATCCACCTAACAAAGAGATTGATGCGAAACAAAGAGAGGAGACTAGAAGGAAGAAAGGTAGCGGAAGAGCCCGTGGACTAGATAACAGAAGGTTAACGCGAAAGCATCTTGGAATCAGTAAATTGGCACCAGCAGAGGACTTATCAGTCTCAGCTCGAGATTTGCATAAAATTAGTATTAATGCACAAAATCTTAAAGAAGAGAAGGTTATCAAAGGTGTTGAGGTGGAAAAAATGTCTATGGATAAATTGGAAGAGACTATACATGTAAAGAATGCATCTCAAGGAGACCTTCCCTTCTCTGGCCCCCTGCAAGTTTCAACATCAAGTGGTTTTGCGTGGGCTAGACGAAGAAGAGACGATACCTCTATTCGATCTTATTCCAGATCAATTTCAAGAGGACACCTAATTAATGGGCTGGAAGATTCTACTACATTGCATTCAAGAAGCAATTTGGACTCTAAGATTCATGAAAAGAGTGACATGACGTCCATCAGCCGATCAAGTTCCAAGGGCCATGAATCAAATGAGAGATCAAAGGTTGTGATAAGGAACCCGTGGGGGAAGTTTGAGCGTCCTGATTCCTTTGATACTTCGGATGAGTACCACTCACAGGAATTTGCAGCGGCATTGTATTTGCGAGATGAAACAGAAGCTAAGAGGAAACAGCTGAGTTATCAGGATCAAGTGGACAAAGTTGAATATTCGGGGCCCTTGTTATCTCAATCTAGCAGAGTGGATGAACTGCTAGATAGACACGAGAGGCATATCCGACAGACAGTTAGAAGATCATGGTTTCAAAGAGGTAAAAATTGA | 2094 | 44.41 | MGCVNTKQAVSVTPAFDHSGVFRDNESTAVGNSGRSRLGLMGEIEKVSKPKAKVKKKSSSEFNGVGSEFGESGRASSNGGGNETLSFRLGNFNKYMEGEQVAAGWPAWLSAVAGEAIQGWVPLRSDAYEKLEKIGQGTYSSVFRARELETGRIVALKKVRFDNFEPESVRFMAREIMILRTLDHPNIIKLEGLITSRLSCSIYLVFEYMDHDITGLLSCPDITFSESQIKCYMKQLLSGLEHCHSRGVMHRDIKGSNLLVNNEGVLKVADFGLANFCNSGHRQPLTSRVVTLWYRPPELLLGSTDYNASVDLWSVGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPDEYWKKSKLPHATLFKPQHPYNNCLRQTFKDHPSTTVNLLETLLSVEPYKRGVASSALTSEYFSTKPYACDPSSMPIYPPNKEIDAKQREETRRKKGSGRARGLDNRRLTRKHLGISKLAPAEDLSVSARDLHKISINAQNLKEEKVIKGVEVEKMSMDKLEETIHVKNASQGDLPFSGPLQVSTSSGFAWARRRRDDTSIRSYSRSISRGHLINGLEDSTTLHSRSNLDSKIHEKSDMTSISRSSSKGHESNERSKVVIRNPWGKFERPDSFDTSDEYHSQEFAAALYLRDETEAKRKQLSYQDQVDKVEYSGPLLSQSSRVDELLDRHERHIRQTVRRSWFQRGKN | 697 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 25535067 | 25540602 | + | MELO3C002003.2.1 | Cme12g01970 | 345187 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme12g01970 | 697 | SUPERFAMILY | Protein kinase-like (PK-like) | 122 | 418 | IPR011009 | - | |
Cme12g01970 | 697 | SMART | serkin_6 | 128 | 412 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme12g01970 | 697 | MobiDBLite | consensus disorder prediction | 60 | 80 | - | - | |
Cme12g01970 | 697 | Pfam | Protein kinase domain | 128 | 412 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme12g01970 | 697 | MobiDBLite | consensus disorder prediction | 423 | 455 | - | - | |
Cme12g01970 | 697 | ProSitePatterns | Protein kinases ATP-binding region signature. | 134 | 157 | IPR017441 | GO:0005524 | |
Cme12g01970 | 697 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 248 | 260 | IPR008271 | GO:0004672|GO:0006468 | |
Cme12g01970 | 697 | PANTHER | BINDING PROTEIN, PUTATIVE-RELATED | 56 | 692 | - | - | |
Cme12g01970 | 697 | ProSiteProfiles | Protein kinase domain profile. | 128 | 412 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme12g01970 | 697 | MobiDBLite | consensus disorder prediction | 55 | 80 | - | - | |
Cme12g01970 | 697 | CDD | STKc_CDK9_like | 128 | 412 | - | - | |
Cme12g01970 | 697 | MobiDBLite | consensus disorder prediction | 432 | 455 | - | - | |
Cme12g01970 | 697 | PANTHER | CELL DIVISION PROTEIN KINASE | 56 | 692 | - | - | |
Cme12g01970 | 697 | Gene3D | Transferase(Phosphotransferase) domain 1 | 211 | 451 | - | - | |
Cme12g01970 | 697 | MobiDBLite | consensus disorder prediction | 573 | 606 | - | - | |
Cme12g01970 | 697 | Gene3D | Phosphorylase Kinase; domain 1 | 115 | 210 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme12g01566 | Cme-Chr12:23051938 | Cme12g01970 | Cme-Chr12:25535067 | 0 | dispersed | |
Cme12g01822 | Cme-Chr12:24646039 | Cme12g01970 | Cme-Chr12:25535067 | 0 | dispersed | |
Cme12g01970 | Cme-Chr12:25535067 | Cme09g00238 | Cme-Chr9:1806211 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65362 | PF00069 | Pkinase | 1.40E-68 | CL0016 | Cme | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme12g01970 | - | - | csv:101220347 | 1333.16 |