Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01970 ATGGGGTGTGTGAACACGAAGCAGGCGGTGTCCGTCACGCCTGCATTCGATCATTCCGGCGTGTTTCGAGATAATGAATCAACGGCGGTGGGGAACTCGGGTCGGAGCCGACTTGGGTTGATGGGGGAGATTGAGAAGGTTTCGAAGCCCAAGGCTAAAGTGAAGAAGAAGAGTTCCAGTGAGTTTAATGGGGTTGGGAGTGAGTTTGGTGAGTCGGGGAGAGCGAGTTCAAATGGCGGAGGAAATGAAACTTTGAGCTTCAGATTGGGGAATTTTAACAAGTATATGGAAGGTGAACAAGTGGCGGCGGGTTGGCCGGCCTGGCTTAGCGCTGTCGCCGGTGAGGCCATTCAAGGTTGGGTTCCACTCCGGTCCGATGCCTATGAGAAGTTGGAAAAGATTGGACAAGGTACATATAGCAGTGTATTCCGAGCTCGTGAACTCGAAACGGGAAGGATCGTTGCTTTAAAGAAGGTTCGATTCGACAATTTTGAGCCTGAAAGTGTTAGATTTATGGCACGAGAGATCATGATTCTCCGCACGCTCGATCACCCTAACATCATCAAATTGGAGGGCTTAATTACATCTCGTTTATCATGTAGCATTTACCTTGTATTCGAGTACATGGACCACGACATTACTGGACTCTTGTCCTGTCCTGATATCACTTTTAGTGAATCACAGATTAAATGCTACATGAAACAATTGTTATCCGGGCTTGAGCATTGTCACTCACGTGGTGTGATGCATCGGGATATTAAAGGATCTAATCTTCTAGTCAATAATGAAGGAGTATTGAAGGTGGCTGATTTTGGATTGGCAAACTTCTGTAATTCTGGGCACCGGCAACCTCTAACAAGTCGTGTTGTCACTCTGTGGTATCGCCCTCCTGAACTTCTACTGGGTTCAACAGACTATAATGCATCTGTGGATCTTTGGAGTGTTGGCTGTGTTTTTGCAGAACTTCTAGTTGGGAAACCTATTCTTCAAGGAAGAACAGAGGTGGAACAGTTACACAAGATCTTCAAGCTTTGCGGCTCTCCTCCTGATGAATACTGGAAAAAATCTAAACTTCCTCATGCCACTTTGTTCAAGCCGCAGCATCCTTATAATAATTGTTTACGGCAGACCTTCAAAGATCATCCTTCAACGACTGTGAACTTGTTAGAAACTCTTCTTTCCGTTGAACCATACAAGCGTGGAGTTGCCTCCTCGGCTCTCACATCTGAGTATTTCAGTACCAAACCGTATGCATGTGATCCATCAAGCATGCCGATATATCCACCTAACAAAGAGATTGATGCGAAACAAAGAGAGGAGACTAGAAGGAAGAAAGGTAGCGGAAGAGCCCGTGGACTAGATAACAGAAGGTTAACGCGAAAGCATCTTGGAATCAGTAAATTGGCACCAGCAGAGGACTTATCAGTCTCAGCTCGAGATTTGCATAAAATTAGTATTAATGCACAAAATCTTAAAGAAGAGAAGGTTATCAAAGGTGTTGAGGTGGAAAAAATGTCTATGGATAAATTGGAAGAGACTATACATGTAAAGAATGCATCTCAAGGAGACCTTCCCTTCTCTGGCCCCCTGCAAGTTTCAACATCAAGTGGTTTTGCGTGGGCTAGACGAAGAAGAGACGATACCTCTATTCGATCTTATTCCAGATCAATTTCAAGAGGACACCTAATTAATGGGCTGGAAGATTCTACTACATTGCATTCAAGAAGCAATTTGGACTCTAAGATTCATGAAAAGAGTGACATGACGTCCATCAGCCGATCAAGTTCCAAGGGCCATGAATCAAATGAGAGATCAAAGGTTGTGATAAGGAACCCGTGGGGGAAGTTTGAGCGTCCTGATTCCTTTGATACTTCGGATGAGTACCACTCACAGGAATTTGCAGCGGCATTGTATTTGCGAGATGAAACAGAAGCTAAGAGGAAACAGCTGAGTTATCAGGATCAAGTGGACAAAGTTGAATATTCGGGGCCCTTGTTATCTCAATCTAGCAGAGTGGATGAACTGCTAGATAGACACGAGAGGCATATCCGACAGACAGTTAGAAGATCATGGTTTCAAAGAGGTAAAAATTGA 2094 44.41 MGCVNTKQAVSVTPAFDHSGVFRDNESTAVGNSGRSRLGLMGEIEKVSKPKAKVKKKSSSEFNGVGSEFGESGRASSNGGGNETLSFRLGNFNKYMEGEQVAAGWPAWLSAVAGEAIQGWVPLRSDAYEKLEKIGQGTYSSVFRARELETGRIVALKKVRFDNFEPESVRFMAREIMILRTLDHPNIIKLEGLITSRLSCSIYLVFEYMDHDITGLLSCPDITFSESQIKCYMKQLLSGLEHCHSRGVMHRDIKGSNLLVNNEGVLKVADFGLANFCNSGHRQPLTSRVVTLWYRPPELLLGSTDYNASVDLWSVGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPDEYWKKSKLPHATLFKPQHPYNNCLRQTFKDHPSTTVNLLETLLSVEPYKRGVASSALTSEYFSTKPYACDPSSMPIYPPNKEIDAKQREETRRKKGSGRARGLDNRRLTRKHLGISKLAPAEDLSVSARDLHKISINAQNLKEEKVIKGVEVEKMSMDKLEETIHVKNASQGDLPFSGPLQVSTSSGFAWARRRRDDTSIRSYSRSISRGHLINGLEDSTTLHSRSNLDSKIHEKSDMTSISRSSSKGHESNERSKVVIRNPWGKFERPDSFDTSDEYHSQEFAAALYLRDETEAKRKQLSYQDQVDKVEYSGPLLSQSSRVDELLDRHERHIRQTVRRSWFQRGKN 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25535067 25540602 + MELO3C002003.2.1 Cme12g01970 345187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01970 697 SUPERFAMILY Protein kinase-like (PK-like) 122 418 IPR011009 -
Cme12g01970 697 SMART serkin_6 128 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01970 697 MobiDBLite consensus disorder prediction 60 80 - -
Cme12g01970 697 Pfam Protein kinase domain 128 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01970 697 MobiDBLite consensus disorder prediction 423 455 - -
Cme12g01970 697 ProSitePatterns Protein kinases ATP-binding region signature. 134 157 IPR017441 GO:0005524
Cme12g01970 697 ProSitePatterns Serine/Threonine protein kinases active-site signature. 248 260 IPR008271 GO:0004672|GO:0006468
Cme12g01970 697 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 56 692 - -
Cme12g01970 697 ProSiteProfiles Protein kinase domain profile. 128 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01970 697 MobiDBLite consensus disorder prediction 55 80 - -
Cme12g01970 697 CDD STKc_CDK9_like 128 412 - -
Cme12g01970 697 MobiDBLite consensus disorder prediction 432 455 - -
Cme12g01970 697 PANTHER CELL DIVISION PROTEIN KINASE 56 692 - -
Cme12g01970 697 Gene3D Transferase(Phosphotransferase) domain 1 211 451 - -
Cme12g01970 697 MobiDBLite consensus disorder prediction 573 606 - -
Cme12g01970 697 Gene3D Phosphorylase Kinase; domain 1 115 210 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme12g01566 Cme-Chr12:23051938 Cme12g01970 Cme-Chr12:25535067 0 dispersed
Cme12g01822 Cme-Chr12:24646039 Cme12g01970 Cme-Chr12:25535067 0 dispersed
Cme12g01970 Cme-Chr12:25535067 Cme09g00238 Cme-Chr9:1806211 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65362 PF00069 Pkinase 1.40E-68 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01970 - - csv:101220347 1333.16