Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme12g01971 | ATGGCGCTGTTTAGAAAATTATTCTACCGGAAGCCTCCAGATCGGCTTCTCGAGATCGCGGAAAGAGTGTACGTGTTTGATTGTTGCTTCTCTAATGAGGTATTGGAGGAGGATGAGTACAAAGTGTACTTGGCTAGCATTATACCAAAGCTGCAAGACCACTTTCCTGACGCATCTTTCATGGTGTTCAACTTTAGTGAACGAAAGAGGAAGACTAAAACTTCGGACATACTGTCTCAATATGGTATGACAGTGATGGAATATCCTCTTCAATATGAAGGGTGTTCTCTACTGCCATTGGAGATGATTCACCACTTCATTCGGTCGAGTGAAAGCTGGTTGTCATTGGAGAGACAGAAAAATGTACTGTTGATGAACTGTGAACGAGGAGGATGGCCAATCCTTGCTTTCATGCTTTCAGCCATTTTGTTGTACCGTAAACAATATGAAGGGGAGCAGAAGACCCTTGAAATGGTCTACAGGCAAGCACCTAGAGAACTCTTCCAAGTCCTTTCTCCTGTAAACTCACAGCCTTCTCAAATGAGATATCTTCAGTACATTTCTAGGAGAAATCTAGGTTCTGATTGGCCTCCACCTGACGCACCTTTAATTTTAGACTGTCTGATACTTCGAGAGCTTCCTATGCTTAATGGAGGAAAGGGATGGAGGCCTATCATACGCATTTACGGTCAGGATCCATTAACACCACGTAATAGAAGCCCAAAACTTGTTTTTTCTAGTGCAAAGATGGAAGGACATGGTCGCCAGTATCTACAGGTAGCAAGCAGACTGGTAAAAGTGGATGTCCATTGTCACGTTCAAGGCGATGTTGTTCTTGAATGCATCCGTTTAGGTGGAGATCTAATACATGCGGAAGTGATGTTTAGATTCATGTTTCACACAGCATTTGTGGATTCAAACAGTTTGAAGCTCAATCGTGATGAGGTTGATGTTTTATGGGATGCCAGGGATCAGTTTCCTAAAGATTTTAGAGCAGAGGTACTTTTTCGGGATGCTGATCATGTTGTGCCTAACCACTCTACAACGGCAAGAAGTGATGATAAAATTGAAAATGAAAGCAACTCGACTGAGGAGTTTTTTGAAGTGGAGGAAATATTTAGCAATATTATTGACGTGCAGGAAGTTAAGAAGGATTATGATGTTCAAATGGTACATACAAACGAAACAGATTATATTGACCATCAAGCAGTTTGGGAGGATGCAGATCCTCCTACATTCCAACGCTGTAAATCATTAGGAGGCAGTCAAAACTTTGACAAGAAGATGGATTTTAACGTTGAAGCAGTGAAGGACATTACTGTTGATGATATAACTTTTAAGACAGGTGAAAAAGTGGACTCTGGCCTTCAAGCAGTGAAGGACATTGTTGTGGATTATGGAGATAAGAAGCCAAATCCTCTGCTATTTTCTGTTAATGTACTGAGACGTATGGCAATCAAGGAACTGATAGATGATGCTTACGACAAGTTGGAAGGGGTGCAGCATAAAGGCTATGGAGAGGATACTGCCATTGCGCACTCAGAATCAAAACTTCCTTTGAAAAAGTTGGAAGCTGATGCGTGGAGGGTTGAATATGAGAAGTTGCAATCAGCTTCAAGGAAACAGCCGTCATCAACTGTTAAGCTAATGAATCATACAATTGTAGCTAAACAGAAAACCAAACAACCAGAAGATCAGAACTTTCTTGTAAAACAGGCAAAACTAAATACTCTTTCTAGATGGACTTCACATGACAAAGAATCGTGCCCAAACTCCATGCATTTGTTTTATCCATCATCAAGACAAACTCTTGCCTCGCCAACATCTATTAGTTCTCATACTAAAGATTCTTATTCATATTCGACTGCAAAATCTGCTTCTGCTTCTGCTACTTCAGGACTGCTTCTGTCTGATGCAGTTGATGAACAGAAAAGTAACAACGCGACTCCTAAAAAACCTTTAAGTTCTGCAACAGAGATTCTCACGAGTAGACCACAATCACCACTCGACTCCCCAAGACCATTGCCTAACACTGTTCTGCATCAAGAGCTTCCTTCTCCTACTACACTTCTACAGCCACCAGCTCTTCAAGCTAACGCATCTTTCTTCCAGGCATCATCTCCTAAATCTTCTTTATCACCCTCTTCATATTTTCACAAAAATGCAAGACCTCCTCCTCCAGCTCCACCTCCGCCACCACCTCCACCTTCCAATCACGTTGCACCAAAAAGTTCATTATTACTGTGTGGAAATAAACCTAAACAAAATGCTCCACCAGCACCACCTCCACCTCCAGTACGTAGAGCTCACCAACAATTACCACCACCACGACCACTCCCTTCACATGGAGCTCTGCTTTCTCCCCGCCTATCAGATGCTGGAGCTTTGCCACCACCCCCACCGCCACCTCCTCCAATTCAGAGGACAGCTCCTCCACATTTAACTCAGGGGCAACAGGCTTTAACGGCAACAGCCTGTGTCGTCTCATCTTCCCTGCCATCTCCAATTTGTGAAGCACCATCACCTCCTCAACCTACAACTGGTCCTCTTCCAAAGGTTCCTTCTTCTTCCCAACCTTCAGGAGGTGTGAGTCCACACTTGGAAGCTAAAGGAGTAAGTTCTTCAACTGATTTGAAAACAGCACCTATAGTGAGGGGACGTGGGTTCTTGCGATCAATGGGCATGGGGGTGGCTACTACAGGGCCTCAGCGGTCATCGTTGAAACCTCTGCACTGGAGCAAGGTAACTCGGGTACTACAAGGGAGCTTATGGGAAGAATTGCAAAGATGTGGAGAGTCTGAAAGTGTACCAGAATTTGATGTATCTGAGCTGGAGACACTTTTCTCTGTGATTGTCCCTAAGCCTATGGCTGATTCCGGAGGTAAATCTGGAGGAAGAAGGAAGTCAGTTGGATCGAAATTGGACAAAGTTCACTTGATTGATATTAGAAGAGCAAACAACACTGAAATCATGCTAACAAAAGTTAGGATGCCACTATCAGACATGATGGCAGCAGTACTCTCCATGGATGAGTCAGTATTAGATGTAGATCAAGTGGAAAATCTTATCAAATTTTGCCCCACCAAAGAGGAGATGGAGCTTCTCAAGGGATACTCTGGCGACAAGGATAAACTTGGAAAGTGTGAACAGTACTTTTTGGAGATGATGCAAGTTCCTCGTGTGGAATCGAAGTTAAGAGTGTTTTCTTTCAAGATTCACTTCAGCTCTCAGATAGTAGAGTTCAAAAAAAGCCTAAACACTGTAAACTCTGTCTGTCAAGAGGTGAAGAATTCTCGCAAATTGAAGGAGATTTTAAAGAAAATTCTTTGCCTGGGAAATATGTTGAACCAAGGAACTGCTAGGGGTTCTGCAATTGGATTCAGGTTGGATAGTCTCTCAAAACTCACTGATACACGTGCTTCTAACAATAAATTGACTCTCATGCATTATCTCTGTAAGGTTCTTGCTTCGAAGTCACCATCACTTCTTGATTTTCATCTGGACCTTGGTAGCTTGGAAGCTGCGTCTAAGATACAATTGAAATCTTTGGCAGAGGAAATGCAAGCAATAACAAAAGGATTGGAAAAGGTGAAGCAGGAACTGATTGCATCTGAAAGCGATGGCCCCATCTCTGAAAATTTTCATAAGATATTGGAAGGATTTGTTACTCTTGCCGAGAGGGAGGTGGAATCTGTGACAGTTCTTTACTCAGTGGCGGGTAGAAATGCTGATGCGCTTGCACTATATTTTGGTGAGGATCCTTCCCGTTGTCCGTTCGAACAAGTTACTGGAACACTCTTCCACTTTACAAGGTCCTTTCTGAAAGCACATGAAGAGAATTGCAAGCAATTGGAAATGGAGATGAGAAAGCTGAGAAAATAG | 3882 | 42.84 | MALFRKLFYRKPPDRLLEIAERVYVFDCCFSNEVLEEDEYKVYLASIIPKLQDHFPDASFMVFNFSERKRKTKTSDILSQYGMTVMEYPLQYEGCSLLPLEMIHHFIRSSESWLSLERQKNVLLMNCERGGWPILAFMLSAILLYRKQYEGEQKTLEMVYRQAPRELFQVLSPVNSQPSQMRYLQYISRRNLGSDWPPPDAPLILDCLILRELPMLNGGKGWRPIIRIYGQDPLTPRNRSPKLVFSSAKMEGHGRQYLQVASRLVKVDVHCHVQGDVVLECIRLGGDLIHAEVMFRFMFHTAFVDSNSLKLNRDEVDVLWDARDQFPKDFRAEVLFRDADHVVPNHSTTARSDDKIENESNSTEEFFEVEEIFSNIIDVQEVKKDYDVQMVHTNETDYIDHQAVWEDADPPTFQRCKSLGGSQNFDKKMDFNVEAVKDITVDDITFKTGEKVDSGLQAVKDIVVDYGDKKPNPLLFSVNVLRRMAIKELIDDAYDKLEGVQHKGYGEDTAIAHSESKLPLKKLEADAWRVEYEKLQSASRKQPSSTVKLMNHTIVAKQKTKQPEDQNFLVKQAKLNTLSRWTSHDKESCPNSMHLFYPSSRQTLASPTSISSHTKDSYSYSTAKSASASATSGLLLSDAVDEQKSNNATPKKPLSSATEILTSRPQSPLDSPRPLPNTVLHQELPSPTTLLQPPALQANASFFQASSPKSSLSPSSYFHKNARPPPPAPPPPPPPPSNHVAPKSSLLLCGNKPKQNAPPAPPPPPVRRAHQQLPPPRPLPSHGALLSPRLSDAGALPPPPPPPPPIQRTAPPHLTQGQQALTATACVVSSSLPSPICEAPSPPQPTTGPLPKVPSSSQPSGGVSPHLEAKGVSSSTDLKTAPIVRGRGFLRSMGMGVATTGPQRSSLKPLHWSKVTRVLQGSLWEELQRCGESESVPEFDVSELETLFSVIVPKPMADSGGKSGGRRKSVGSKLDKVHLIDIRRANNTEIMLTKVRMPLSDMMAAVLSMDESVLDVDQVENLIKFCPTKEEMELLKGYSGDKDKLGKCEQYFLEMMQVPRVESKLRVFSFKIHFSSQIVEFKKSLNTVNSVCQEVKNSRKLKEILKKILCLGNMLNQGTARGSAIGFRLDSLSKLTDTRASNNKLTLMHYLCKVLASKSPSLLDFHLDLGSLEAASKIQLKSLAEEMQAITKGLEKVKQELIASESDGPISENFHKILEGFVTLAEREVESVTVLYSVAGRNADALALYFGEDPSRCPFEQVTGTLFHFTRSFLKAHEENCKQLEMEMRKLRK | 1293 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 25543931 | 25552911 | + | MELO3C002002.2.1 | Cme12g01971 | 345188 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme12g01971 | 1293 | PANTHER | FORMIN-J | 757 | 1291 | - | - | |
| Cme12g01971 | 1293 | PANTHER | FORMIN-J | 1 | 765 | - | - | |
| Cme12g01971 | 1293 | MobiDBLite | consensus disorder prediction | 704 | 819 | - | - | |
| Cme12g01971 | 1293 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 201 | 338 | IPR035892 | - | |
| Cme12g01971 | 1293 | ProSiteProfiles | Formin homology-2 (FH2) domain profile. | 897 | 1293 | IPR015425 | - | |
| Cme12g01971 | 1293 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 797 | 1293 | - | - | |
| Cme12g01971 | 1293 | MobiDBLite | consensus disorder prediction | 853 | 880 | - | - | |
| Cme12g01971 | 1293 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 13 | 188 | IPR029021 | - | |
| Cme12g01971 | 1293 | MobiDBLite | consensus disorder prediction | 720 | 740 | - | - | |
| Cme12g01971 | 1293 | Pfam | C2 domain of PTEN tumour-suppressor protein | 199 | 338 | IPR014020 | - | |
| Cme12g01971 | 1293 | SMART | it6_source | 897 | 1292 | IPR015425 | - | |
| Cme12g01971 | 1293 | MobiDBLite | consensus disorder prediction | 642 | 668 | - | - | |
| Cme12g01971 | 1293 | Gene3D | Protein tyrosine phosphatase superfamily | 14 | 202 | IPR029021 | - | |
| Cme12g01971 | 1293 | Coils | Coil | 1274 | 1293 | - | - | |
| Cme12g01971 | 1293 | Gene3D | - | 203 | 337 | - | - | |
| Cme12g01971 | 1293 | MobiDBLite | consensus disorder prediction | 704 | 718 | - | - | |
| Cme12g01971 | 1293 | MobiDBLite | consensus disorder prediction | 642 | 692 | - | - | |
| Cme12g01971 | 1293 | SMART | PTEN_C2_2 | 198 | 338 | IPR014020 | - | |
| Cme12g01971 | 1293 | MobiDBLite | consensus disorder prediction | 793 | 810 | - | - | |
| Cme12g01971 | 1293 | MobiDBLite | consensus disorder prediction | 837 | 852 | - | - | |
| Cme12g01971 | 1293 | Pfam | Formin Homology 2 Domain | 902 | 1273 | IPR015425 | - | |
| Cme12g01971 | 1293 | ProSiteProfiles | C2 tensin-type domain profile. | 200 | 339 | IPR014020 | - | |
| Cme12g01971 | 1293 | Gene3D | Formin, FH2 domain | 898 | 1284 | IPR042201 | - | |
| Cme12g01971 | 1293 | MobiDBLite | consensus disorder prediction | 837 | 880 | - | - | |
| Cme12g01971 | 1293 | Coils | Coil | 1180 | 1200 | - | - | |
| Cme12g01971 | 1293 | MobiDBLite | consensus disorder prediction | 755 | 782 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cme02g01861 | Cme12g01971 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme02g01069 | Cme-Chr2:15699961 | Cme12g01971 | Cme-Chr12:25543931 | 4.15E-112 | dispersed | |
| Cme04g01449 | Cme-Chr4:20598444 | Cme12g01971 | Cme-Chr12:25543931 | 1.56E-119 | dispersed | |
| Cme07g00118 | Cme-Chr7:785333 | Cme12g01971 | Cme-Chr12:25543931 | 5.13E-157 | dispersed | |
| Cme11g00355 | Cme-Chr11:3644288 | Cme12g01971 | Cme-Chr12:25543931 | 1.35E-27 | dispersed | |
| Cme02g00090 | Cme-Chr2:698219 | Cme12g01971 | Cme-Chr12:25543931 | 1.02E-30 | transposed | |
| Cme04g00799 | Cme-Chr4:9745980 | Cme12g01971 | Cme-Chr12:25543931 | 5.33E-25 | transposed | |
| Cme10g00485 | Cme-Chr10:3114817 | Cme12g01971 | Cme-Chr12:25543931 | 7.65E-33 | transposed | |
| Cme10g01384 | Cme-Chr10:16051357 | Cme12g01971 | Cme-Chr12:25543931 | 8.80E-28 | transposed | |
| Cme03g01290 | Cme-Chr3:22471660 | Cme12g01971 | Cme-Chr12:25543931 | 8.35E-28 | transposed | |
| Cme12g01971 | Cme-Chr12:25543931 | Cme02g01861 | Cme-Chr2:25245447 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme12g01971 | - | - | csv:101221127 | 2275.74 |