Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01971 ATGGCGCTGTTTAGAAAATTATTCTACCGGAAGCCTCCAGATCGGCTTCTCGAGATCGCGGAAAGAGTGTACGTGTTTGATTGTTGCTTCTCTAATGAGGTATTGGAGGAGGATGAGTACAAAGTGTACTTGGCTAGCATTATACCAAAGCTGCAAGACCACTTTCCTGACGCATCTTTCATGGTGTTCAACTTTAGTGAACGAAAGAGGAAGACTAAAACTTCGGACATACTGTCTCAATATGGTATGACAGTGATGGAATATCCTCTTCAATATGAAGGGTGTTCTCTACTGCCATTGGAGATGATTCACCACTTCATTCGGTCGAGTGAAAGCTGGTTGTCATTGGAGAGACAGAAAAATGTACTGTTGATGAACTGTGAACGAGGAGGATGGCCAATCCTTGCTTTCATGCTTTCAGCCATTTTGTTGTACCGTAAACAATATGAAGGGGAGCAGAAGACCCTTGAAATGGTCTACAGGCAAGCACCTAGAGAACTCTTCCAAGTCCTTTCTCCTGTAAACTCACAGCCTTCTCAAATGAGATATCTTCAGTACATTTCTAGGAGAAATCTAGGTTCTGATTGGCCTCCACCTGACGCACCTTTAATTTTAGACTGTCTGATACTTCGAGAGCTTCCTATGCTTAATGGAGGAAAGGGATGGAGGCCTATCATACGCATTTACGGTCAGGATCCATTAACACCACGTAATAGAAGCCCAAAACTTGTTTTTTCTAGTGCAAAGATGGAAGGACATGGTCGCCAGTATCTACAGGTAGCAAGCAGACTGGTAAAAGTGGATGTCCATTGTCACGTTCAAGGCGATGTTGTTCTTGAATGCATCCGTTTAGGTGGAGATCTAATACATGCGGAAGTGATGTTTAGATTCATGTTTCACACAGCATTTGTGGATTCAAACAGTTTGAAGCTCAATCGTGATGAGGTTGATGTTTTATGGGATGCCAGGGATCAGTTTCCTAAAGATTTTAGAGCAGAGGTACTTTTTCGGGATGCTGATCATGTTGTGCCTAACCACTCTACAACGGCAAGAAGTGATGATAAAATTGAAAATGAAAGCAACTCGACTGAGGAGTTTTTTGAAGTGGAGGAAATATTTAGCAATATTATTGACGTGCAGGAAGTTAAGAAGGATTATGATGTTCAAATGGTACATACAAACGAAACAGATTATATTGACCATCAAGCAGTTTGGGAGGATGCAGATCCTCCTACATTCCAACGCTGTAAATCATTAGGAGGCAGTCAAAACTTTGACAAGAAGATGGATTTTAACGTTGAAGCAGTGAAGGACATTACTGTTGATGATATAACTTTTAAGACAGGTGAAAAAGTGGACTCTGGCCTTCAAGCAGTGAAGGACATTGTTGTGGATTATGGAGATAAGAAGCCAAATCCTCTGCTATTTTCTGTTAATGTACTGAGACGTATGGCAATCAAGGAACTGATAGATGATGCTTACGACAAGTTGGAAGGGGTGCAGCATAAAGGCTATGGAGAGGATACTGCCATTGCGCACTCAGAATCAAAACTTCCTTTGAAAAAGTTGGAAGCTGATGCGTGGAGGGTTGAATATGAGAAGTTGCAATCAGCTTCAAGGAAACAGCCGTCATCAACTGTTAAGCTAATGAATCATACAATTGTAGCTAAACAGAAAACCAAACAACCAGAAGATCAGAACTTTCTTGTAAAACAGGCAAAACTAAATACTCTTTCTAGATGGACTTCACATGACAAAGAATCGTGCCCAAACTCCATGCATTTGTTTTATCCATCATCAAGACAAACTCTTGCCTCGCCAACATCTATTAGTTCTCATACTAAAGATTCTTATTCATATTCGACTGCAAAATCTGCTTCTGCTTCTGCTACTTCAGGACTGCTTCTGTCTGATGCAGTTGATGAACAGAAAAGTAACAACGCGACTCCTAAAAAACCTTTAAGTTCTGCAACAGAGATTCTCACGAGTAGACCACAATCACCACTCGACTCCCCAAGACCATTGCCTAACACTGTTCTGCATCAAGAGCTTCCTTCTCCTACTACACTTCTACAGCCACCAGCTCTTCAAGCTAACGCATCTTTCTTCCAGGCATCATCTCCTAAATCTTCTTTATCACCCTCTTCATATTTTCACAAAAATGCAAGACCTCCTCCTCCAGCTCCACCTCCGCCACCACCTCCACCTTCCAATCACGTTGCACCAAAAAGTTCATTATTACTGTGTGGAAATAAACCTAAACAAAATGCTCCACCAGCACCACCTCCACCTCCAGTACGTAGAGCTCACCAACAATTACCACCACCACGACCACTCCCTTCACATGGAGCTCTGCTTTCTCCCCGCCTATCAGATGCTGGAGCTTTGCCACCACCCCCACCGCCACCTCCTCCAATTCAGAGGACAGCTCCTCCACATTTAACTCAGGGGCAACAGGCTTTAACGGCAACAGCCTGTGTCGTCTCATCTTCCCTGCCATCTCCAATTTGTGAAGCACCATCACCTCCTCAACCTACAACTGGTCCTCTTCCAAAGGTTCCTTCTTCTTCCCAACCTTCAGGAGGTGTGAGTCCACACTTGGAAGCTAAAGGAGTAAGTTCTTCAACTGATTTGAAAACAGCACCTATAGTGAGGGGACGTGGGTTCTTGCGATCAATGGGCATGGGGGTGGCTACTACAGGGCCTCAGCGGTCATCGTTGAAACCTCTGCACTGGAGCAAGGTAACTCGGGTACTACAAGGGAGCTTATGGGAAGAATTGCAAAGATGTGGAGAGTCTGAAAGTGTACCAGAATTTGATGTATCTGAGCTGGAGACACTTTTCTCTGTGATTGTCCCTAAGCCTATGGCTGATTCCGGAGGTAAATCTGGAGGAAGAAGGAAGTCAGTTGGATCGAAATTGGACAAAGTTCACTTGATTGATATTAGAAGAGCAAACAACACTGAAATCATGCTAACAAAAGTTAGGATGCCACTATCAGACATGATGGCAGCAGTACTCTCCATGGATGAGTCAGTATTAGATGTAGATCAAGTGGAAAATCTTATCAAATTTTGCCCCACCAAAGAGGAGATGGAGCTTCTCAAGGGATACTCTGGCGACAAGGATAAACTTGGAAAGTGTGAACAGTACTTTTTGGAGATGATGCAAGTTCCTCGTGTGGAATCGAAGTTAAGAGTGTTTTCTTTCAAGATTCACTTCAGCTCTCAGATAGTAGAGTTCAAAAAAAGCCTAAACACTGTAAACTCTGTCTGTCAAGAGGTGAAGAATTCTCGCAAATTGAAGGAGATTTTAAAGAAAATTCTTTGCCTGGGAAATATGTTGAACCAAGGAACTGCTAGGGGTTCTGCAATTGGATTCAGGTTGGATAGTCTCTCAAAACTCACTGATACACGTGCTTCTAACAATAAATTGACTCTCATGCATTATCTCTGTAAGGTTCTTGCTTCGAAGTCACCATCACTTCTTGATTTTCATCTGGACCTTGGTAGCTTGGAAGCTGCGTCTAAGATACAATTGAAATCTTTGGCAGAGGAAATGCAAGCAATAACAAAAGGATTGGAAAAGGTGAAGCAGGAACTGATTGCATCTGAAAGCGATGGCCCCATCTCTGAAAATTTTCATAAGATATTGGAAGGATTTGTTACTCTTGCCGAGAGGGAGGTGGAATCTGTGACAGTTCTTTACTCAGTGGCGGGTAGAAATGCTGATGCGCTTGCACTATATTTTGGTGAGGATCCTTCCCGTTGTCCGTTCGAACAAGTTACTGGAACACTCTTCCACTTTACAAGGTCCTTTCTGAAAGCACATGAAGAGAATTGCAAGCAATTGGAAATGGAGATGAGAAAGCTGAGAAAATAG 3882 42.84 MALFRKLFYRKPPDRLLEIAERVYVFDCCFSNEVLEEDEYKVYLASIIPKLQDHFPDASFMVFNFSERKRKTKTSDILSQYGMTVMEYPLQYEGCSLLPLEMIHHFIRSSESWLSLERQKNVLLMNCERGGWPILAFMLSAILLYRKQYEGEQKTLEMVYRQAPRELFQVLSPVNSQPSQMRYLQYISRRNLGSDWPPPDAPLILDCLILRELPMLNGGKGWRPIIRIYGQDPLTPRNRSPKLVFSSAKMEGHGRQYLQVASRLVKVDVHCHVQGDVVLECIRLGGDLIHAEVMFRFMFHTAFVDSNSLKLNRDEVDVLWDARDQFPKDFRAEVLFRDADHVVPNHSTTARSDDKIENESNSTEEFFEVEEIFSNIIDVQEVKKDYDVQMVHTNETDYIDHQAVWEDADPPTFQRCKSLGGSQNFDKKMDFNVEAVKDITVDDITFKTGEKVDSGLQAVKDIVVDYGDKKPNPLLFSVNVLRRMAIKELIDDAYDKLEGVQHKGYGEDTAIAHSESKLPLKKLEADAWRVEYEKLQSASRKQPSSTVKLMNHTIVAKQKTKQPEDQNFLVKQAKLNTLSRWTSHDKESCPNSMHLFYPSSRQTLASPTSISSHTKDSYSYSTAKSASASATSGLLLSDAVDEQKSNNATPKKPLSSATEILTSRPQSPLDSPRPLPNTVLHQELPSPTTLLQPPALQANASFFQASSPKSSLSPSSYFHKNARPPPPAPPPPPPPPSNHVAPKSSLLLCGNKPKQNAPPAPPPPPVRRAHQQLPPPRPLPSHGALLSPRLSDAGALPPPPPPPPPIQRTAPPHLTQGQQALTATACVVSSSLPSPICEAPSPPQPTTGPLPKVPSSSQPSGGVSPHLEAKGVSSSTDLKTAPIVRGRGFLRSMGMGVATTGPQRSSLKPLHWSKVTRVLQGSLWEELQRCGESESVPEFDVSELETLFSVIVPKPMADSGGKSGGRRKSVGSKLDKVHLIDIRRANNTEIMLTKVRMPLSDMMAAVLSMDESVLDVDQVENLIKFCPTKEEMELLKGYSGDKDKLGKCEQYFLEMMQVPRVESKLRVFSFKIHFSSQIVEFKKSLNTVNSVCQEVKNSRKLKEILKKILCLGNMLNQGTARGSAIGFRLDSLSKLTDTRASNNKLTLMHYLCKVLASKSPSLLDFHLDLGSLEAASKIQLKSLAEEMQAITKGLEKVKQELIASESDGPISENFHKILEGFVTLAEREVESVTVLYSVAGRNADALALYFGEDPSRCPFEQVTGTLFHFTRSFLKAHEENCKQLEMEMRKLRK 1293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25543931 25552911 + MELO3C002002.2.1 Cme12g01971 345188

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01971 1293 PANTHER FORMIN-J 757 1291 - -
Cme12g01971 1293 PANTHER FORMIN-J 1 765 - -
Cme12g01971 1293 MobiDBLite consensus disorder prediction 704 819 - -
Cme12g01971 1293 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 338 IPR035892 -
Cme12g01971 1293 ProSiteProfiles Formin homology-2 (FH2) domain profile. 897 1293 IPR015425 -
Cme12g01971 1293 SUPERFAMILY Formin homology 2 domain (FH2 domain) 797 1293 - -
Cme12g01971 1293 MobiDBLite consensus disorder prediction 853 880 - -
Cme12g01971 1293 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 13 188 IPR029021 -
Cme12g01971 1293 MobiDBLite consensus disorder prediction 720 740 - -
Cme12g01971 1293 Pfam C2 domain of PTEN tumour-suppressor protein 199 338 IPR014020 -
Cme12g01971 1293 SMART it6_source 897 1292 IPR015425 -
Cme12g01971 1293 MobiDBLite consensus disorder prediction 642 668 - -
Cme12g01971 1293 Gene3D Protein tyrosine phosphatase superfamily 14 202 IPR029021 -
Cme12g01971 1293 Coils Coil 1274 1293 - -
Cme12g01971 1293 Gene3D - 203 337 - -
Cme12g01971 1293 MobiDBLite consensus disorder prediction 704 718 - -
Cme12g01971 1293 MobiDBLite consensus disorder prediction 642 692 - -
Cme12g01971 1293 SMART PTEN_C2_2 198 338 IPR014020 -
Cme12g01971 1293 MobiDBLite consensus disorder prediction 793 810 - -
Cme12g01971 1293 MobiDBLite consensus disorder prediction 837 852 - -
Cme12g01971 1293 Pfam Formin Homology 2 Domain 902 1273 IPR015425 -
Cme12g01971 1293 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Cme12g01971 1293 Gene3D Formin, FH2 domain 898 1284 IPR042201 -
Cme12g01971 1293 MobiDBLite consensus disorder prediction 837 880 - -
Cme12g01971 1293 Coils Coil 1180 1200 - -
Cme12g01971 1293 MobiDBLite consensus disorder prediction 755 782 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01971 - - - csv:101221127 2275.74
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme02g01861 Cme12g01971 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01069 Cme-Chr2:15699961 Cme12g01971 Cme-Chr12:25543931 4.15E-112 dispersed
Cme04g01449 Cme-Chr4:20598444 Cme12g01971 Cme-Chr12:25543931 1.56E-119 dispersed
Cme07g00118 Cme-Chr7:785333 Cme12g01971 Cme-Chr12:25543931 5.13E-157 dispersed
Cme11g00355 Cme-Chr11:3644288 Cme12g01971 Cme-Chr12:25543931 1.35E-27 dispersed
Cme02g00090 Cme-Chr2:698219 Cme12g01971 Cme-Chr12:25543931 1.02E-30 transposed
Cme04g00799 Cme-Chr4:9745980 Cme12g01971 Cme-Chr12:25543931 5.33E-25 transposed
Cme10g00485 Cme-Chr10:3114817 Cme12g01971 Cme-Chr12:25543931 7.65E-33 transposed
Cme10g01384 Cme-Chr10:16051357 Cme12g01971 Cme-Chr12:25543931 8.80E-28 transposed
Cme03g01290 Cme-Chr3:22471660 Cme12g01971 Cme-Chr12:25543931 8.35E-28 transposed
Cme12g01971 Cme-Chr12:25543931 Cme02g01861 Cme-Chr2:25245447 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g592 Blo04g00779 Blo16g00180 . . . Bpe13g00300 Bma06g00166 . . . Cma10g00209 Cma11g00123 Car10g00196 Car11g00171 . Cpe20g00055 Cpe04g01480 Bhi02g00293 Tan09g2089 . . Hepe09g0095 . . Cla06g01570 Cam06g1735 Cec06g1796 Cco06g1795 Clacu06g1702 Cmu06g1648 Cre06g2459 Cone2ag0827 Cone16ag0189 Cone13ag0054 . Lsi02g00091 Csa01g00571 Chy12g01523 Cme12g01971 . . Bda11g01706 Bda14g00861 . Bpe15g00594 Bma03g00847 . Sed08g0241 Cmo10g00227 Cmo11g00187 Cma13g01093 . Car13g00929 . . Cpe18g00780 Bhi08g01136 Tan05g2418 Cmetu02g1238 Lac10g0118 Hepe07g2490 . . Cla04g01181 Cam04g1237 Cec01g1748 Cco01g1794 Clacu04g1265 Cmu04g1244 Cre01g1538 Lsi06g01445 Csa01g00260 Chy02g02475 Cme02g01861
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme10g01384 . 220 696 FH2 protein (formin) Gene Family AT3G25500 65.2 5.9e-161 565.5
Cme11g00355 . 475 894 FH2 protein (formin) Gene Family AT3G25500 63.0 4.0e-141 499.6
Cme02g00090 . 500 893 FH2 protein (formin) Gene Family AT3G25500 51.7 4.7e-102 369.8
Cme11g00355 . 475 910 FH2 protein (formin) Gene Family AT2G43800 55.4 8.9e-126 448.4
Cme04g00799 . 445 591 FH2 protein (formin) Gene Family AT4G15200 65.5 1.2e-46 184.5
Cme11g00755 . 334 599 FH2 protein (formin) Gene Family AT4G15200 54.4 1.3e-38 157.9
Cme04g00799 . 7 953 FH2 protein (formin) Gene Family AT5G54650 50.2 4.1e-171 599.0
Cme11g00355 . 35 913 FH2 protein (formin) Gene Family AT5G67470 56.5 8.1e-228 787.3
Cme10g01384 . 258 678 FH2 protein (formin) Gene Family AT5G67470 62.3 1.4e-126 451.1
Cme02g00090 . 500 895 FH2 protein (formin) Gene Family AT5G67470 50.7 3.0e-105 380.2
Cme10g00485 . 403 890 FH2 protein (formin) Gene Family AT1G59910 52.5 6.8e-129 458.8
Cme11g00355 . 496 871 FH2 protein (formin) Gene Family AT5G48360 50.3 6.9e-90 328.9
Cme04g00799 . 451 864 FH2 protein (formin) Gene Family AT3G05470 51.2 2.0e-106 384.0
Cme11g00355 . 472 870 FH2 protein (formin) Gene Family AT3G05470 51.8 5.9e-106 382.5
Cme04g01449 . 893 1204 FH2 protein (formin) Gene Family AT1G42980 50.5 1.7e-68 256.5
Cme04g01449 . 1 1211 FH2 protein (formin) Gene Family AT1G31810 66.8 0.0e+00 1245.7
Cme07g00118 . 1 428 FH2 protein (formin) Gene Family AT1G31810 52.3 2.3e-132 470.7
Cme02g01861 CCT 1014 1335 FH2 protein (formin) Gene Family AT5G07650 75.2 4.0e-130 462.6
Cme12g01971 CCT 980 1290 FH2 protein (formin) Gene Family AT5G07650 69.5 1.6e-118 424.1
Cme02g01069 . 867 1186 FH2 protein (formin) Gene Family AT5G07650 62.0 1.9e-108 390.6
Cme04g01449 . 877 1208 FH2 protein (formin) Gene Family AT5G07650 58.4 1.2e-105 381.3
Cme02g01861 CCT 941 1328 FH2 protein (formin) Gene Family AT5G07770 69.4 3.8e-141 498.8
Cme12g01971 CCT 903 1290 FH2 protein (formin) Gene Family AT5G07770 62.7 1.8e-127 453.4
Cme02g01069 . 790 1178 FH2 protein (formin) Gene Family AT5G07770 56.7 2.7e-115 412.9
Cme04g01449 . 813 1202 FH2 protein (formin) Gene Family AT5G07770 54.7 2.0e-113 406.8
Cme02g01069 . 797 1187 FH2 protein (formin) Gene Family AT3G32400 68.4 6.6e-147 517.7
Cme02g01861 CCT 941 1335 FH2 protein (formin) Gene Family AT3G32400 65.7 1.3e-142 503.4
Cme04g01449 . 813 1207 FH2 protein (formin) Gene Family AT3G32400 65.7 2.7e-140 495.7
Cme12g01971 CCT 873 1293 FH2 protein (formin) Gene Family AT3G32400 57.6 2.3e-131 466.1
Cme07g00118 . 1 575 FH2 protein (formin) Gene Family AT2G25050 58.6 1.3e-190 664.1
Cme02g01861 CCT 942 1335 FH2 protein (formin) Gene Family AT5G07780 63.3 4.3e-124 441.8
Cme12g01971 CCT 904 1293 FH2 protein (formin) Gene Family AT5G07780 56.9 8.5e-112 401.0
Cme04g01449 . 814 1203 FH2 protein (formin) Gene Family AT5G07780 51.7 3.3e-100 362.5
Cme02g01069 . 797 1178 FH2 protein (formin) Gene Family AT5G07780 53.3 4.4e-100 362.1
Cme02g01861 CCT 1 1344 FH2 protein (formin) Gene Family AT5G07740 51.2 0.0e+00 1154.8
Cme07g00118 . 1 403 FH2 protein (formin) Gene Family AT5G07740 62.6 1.5e-142 505.0
Cme02g01861 CCT 1013 1342 FH2 protein (formin) Gene Family AT5G07760 74.7 1.1e-128 458.0
Cme12g01971 CCT 979 1293 FH2 protein (formin) Gene Family AT5G07760 69.3 1.2e-116 417.9
Cme02g01069 . 866 1186 FH2 protein (formin) Gene Family AT5G07760 64.4 1.1e-109 394.8
Cme04g01449 . 887 1208 FH2 protein (formin) Gene Family AT5G07760 59.4 2.1e-103 374.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001040 2 2 4 3 2 2 4 2 2 2 2 2 4 2 2 5 2 4 4 2 2 2 4 2 2 3 3 6 3 1 82