Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme12g01975 | ATGGATTGCAAGGAGCTCAATTTAAACGAAGATTGTGGTGGCTGTGGTAGCGGTGGAAAGAATGGGGGAGATGGGTTTATAGACCGGAGCAAAGTAAGGATTTTGCTGTGCGATAATGATTCAAAAAGTTCAGAAGAGGTTTTCAAGCTTCTTTTGAAATGTTCCTACCAGGTCATCTCCGTGAGTTCAGCTAGGCAGGTCATCGATGCTTTGAATGCGGAGGGACCTGAAATTGATATTATACTCTCGGAAGTTGACCTGCCAATGGCCAAAGGTATGAAAATGTTAAAGTATATCACTCGGGATAAAGAGCTCCGACGCATTCCTGTTATCATGATGTCAACACAAGATGAGGTCCCTATTGTCGTTAAGTGCTTGAGGCTTGGAGCAGCTGACTATCTTGTGAAGCCTTTACGGACAAATGAGCTATTAAACTTGTGGACGCACATGTGGAGAAGAAGACGCATGCTTGGACTGGCGGAAAAAAATATTTTAAATTATGAATTTGATATGGTGGCATCAGATCCAAGTGATGCTAATACCAATAGTACTACTTTGTTTTCGGATGACACTGATGACAAGTCACGTAGGAGCACCAATCCGGATATGGGAATTACCGCACCTGCAACACATCAAGAAGATGAGCCTGGTATTGCCCCCACACTTGTGGAGCCTCCTGCTGTTCATTCAGTGCAACATCAGCCAGATGTACCTGGAATTAGTGAGCGCCGAACAGGGCAACCTTCGTCATGCCCCAGAAAGAGTGAACTAAAGATTGGGGAATCATCCGCATTCTTTACCTATGTCAAATCAAGAACTGTGAAAAATAAGGCAGTAGATATTGAAGACAATGCTAAACGACTTTTGCTGGATGAAAATTATCAAGAAACTAGTCAGCGTGCAGTTCGTCTTCCCCCAATACAAGAAATTGGGGAGGCCTTGGAAAGCCATTCACAAGGAGACGAACACCCAAGCAGTACTAGTTTTCCTGATTCTTTTTCTGTGGAGAGATCTTGTACACCACCTGCCGTCACAGAAGTTCACAGGGAAAGAAACATCAATGAAGAAAATTGTTCTCAAGTCCTTGTGCACACTCGAAATGGATCTCAACTTGATATTTCAGGCCTACCTGTGCAAACACAAACTGCTTATCCTTTTTATATGCCAGAAGGTATGATGTCGGCGCAAATGTACCAAAACAACCTGCATGATATGCAAAATCATGCGGCAATGATGTCACAGTATGGTCATTTTCACCATTGCCCTCCGAATGTAAATGGGGTGGCATCTTATCCTTATTACCCTATGAACATATGTTTACAACCTGGTCAAATGCCAACTACCACCAATACTCATTCATGGCCATCTCTTGGGAATTCATCTTCCAATGAAGCAAAATCTAACAAACTTGATAGAAGAGAGGCAGCATTGATTAAATTTAGGCAGAAAAGGAAGGAGCGCTGTTTTGACAAAAAGATTAGGTACGTTAATAGGAAACGGCTTGCTGAGAGAAGGCCTCGCGTGCGTGGCCAGTTTGTAAGAAAGGTAAATGGTGTCAATGTAGATCTTAACGGACAGCCCGCATCTGCTGATGATGTTGAGGATGAAGACGAGGATGAGGAGCTACTATCAAGGGATTCTTCTCATGAGGATGACGGTTCAGGATATTAG | 1671 | 43.21 | MDCKELNLNEDCGGCGSGGKNGGDGFIDRSKVRILLCDNDSKSSEEVFKLLLKCSYQVISVSSARQVIDALNAEGPEIDIILSEVDLPMAKGMKMLKYITRDKELRRIPVIMMSTQDEVPIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILNYEFDMVASDPSDANTNSTTLFSDDTDDKSRRSTNPDMGITAPATHQEDEPGIAPTLVEPPAVHSVQHQPDVPGISERRTGQPSSCPRKSELKIGESSAFFTYVKSRTVKNKAVDIEDNAKRLLLDENYQETSQRAVRLPPIQEIGEALESHSQGDEHPSSTSFPDSFSVERSCTPPAVTEVHRERNINEENCSQVLVHTRNGSQLDISGLPVQTQTAYPFYMPEGMMSAQMYQNNLHDMQNHAAMMSQYGHFHHCPPNVNGVASYPYYPMNICLQPGQMPTTTNTHSWPSLGNSSSNEAKSNKLDRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKVNGVNVDLNGQPASADDVEDEDEDEELLSRDSSHEDDGSGY | 556 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 25560215 | 25565043 | - | MELO3C001999.2.1 | Cme12g01975 | 345192 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme12g01975 | 556 | Pfam | CCT motif | 473 | 515 | IPR010402 | GO:0005515 | |
Cme12g01975 | 556 | ProSiteProfiles | Response regulatory domain profile. | 33 | 151 | IPR001789 | GO:0000160 | |
Cme12g01975 | 556 | MobiDBLite | consensus disorder prediction | 518 | 556 | - | - | |
Cme12g01975 | 556 | Pfam | Response regulator receiver domain | 34 | 145 | IPR001789 | GO:0000160 | |
Cme12g01975 | 556 | MobiDBLite | consensus disorder prediction | 314 | 342 | - | - | |
Cme12g01975 | 556 | MobiDBLite | consensus disorder prediction | 529 | 545 | - | - | |
Cme12g01975 | 556 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR1 | 4 | 533 | - | - | |
Cme12g01975 | 556 | MobiDBLite | consensus disorder prediction | 177 | 256 | - | - | |
Cme12g01975 | 556 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 4 | 533 | IPR045279 | GO:0009736 | |
Cme12g01975 | 556 | MobiDBLite | consensus disorder prediction | 320 | 339 | - | - | |
Cme12g01975 | 556 | MobiDBLite | consensus disorder prediction | 447 | 465 | - | - | |
Cme12g01975 | 556 | MobiDBLite | consensus disorder prediction | 447 | 470 | - | - | |
Cme12g01975 | 556 | ProSiteProfiles | CCT domain profile. | 473 | 515 | IPR010402 | GO:0005515 | |
Cme12g01975 | 556 | Gene3D | - | 32 | 221 | - | - | |
Cme12g01975 | 556 | SUPERFAMILY | CheY-like | 30 | 158 | IPR011006 | - | |
Cme12g01975 | 556 | SMART | REC_2 | 32 | 147 | IPR001789 | GO:0000160 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme03g01815 | Cme-Chr3:26519205 | Cme12g01975 | Cme-Chr12:25560215 | 1.67E-11 | dispersed | |
Cme09g02021 | Cme-Chr9:23891816 | Cme12g01975 | Cme-Chr12:25560215 | 2.25E-11 | dispersed | |
Cme12g01975 | Cme-Chr12:25560215 | Cme03g02198 | Cme-Chr3:28932154 | 4.19E-20 | dispersed | |
Cme12g01975 | Cme-Chr12:25560215 | Cme02g01081 | Cme-Chr2:15840669 | 1.31E-18 | transposed | |
Cme12g01975 | Cme-Chr12:25560215 | Cme06g00764 | Cme-Chr6:5045134 | 1.42E-18 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42387 | PF00072 | Response_reg | 8.20E-17 | CL0304 | Cme | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme12g01975 | K12127 | - | csv:101220107 | 1042.72 |