Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01975 ATGGATTGCAAGGAGCTCAATTTAAACGAAGATTGTGGTGGCTGTGGTAGCGGTGGAAAGAATGGGGGAGATGGGTTTATAGACCGGAGCAAAGTAAGGATTTTGCTGTGCGATAATGATTCAAAAAGTTCAGAAGAGGTTTTCAAGCTTCTTTTGAAATGTTCCTACCAGGTCATCTCCGTGAGTTCAGCTAGGCAGGTCATCGATGCTTTGAATGCGGAGGGACCTGAAATTGATATTATACTCTCGGAAGTTGACCTGCCAATGGCCAAAGGTATGAAAATGTTAAAGTATATCACTCGGGATAAAGAGCTCCGACGCATTCCTGTTATCATGATGTCAACACAAGATGAGGTCCCTATTGTCGTTAAGTGCTTGAGGCTTGGAGCAGCTGACTATCTTGTGAAGCCTTTACGGACAAATGAGCTATTAAACTTGTGGACGCACATGTGGAGAAGAAGACGCATGCTTGGACTGGCGGAAAAAAATATTTTAAATTATGAATTTGATATGGTGGCATCAGATCCAAGTGATGCTAATACCAATAGTACTACTTTGTTTTCGGATGACACTGATGACAAGTCACGTAGGAGCACCAATCCGGATATGGGAATTACCGCACCTGCAACACATCAAGAAGATGAGCCTGGTATTGCCCCCACACTTGTGGAGCCTCCTGCTGTTCATTCAGTGCAACATCAGCCAGATGTACCTGGAATTAGTGAGCGCCGAACAGGGCAACCTTCGTCATGCCCCAGAAAGAGTGAACTAAAGATTGGGGAATCATCCGCATTCTTTACCTATGTCAAATCAAGAACTGTGAAAAATAAGGCAGTAGATATTGAAGACAATGCTAAACGACTTTTGCTGGATGAAAATTATCAAGAAACTAGTCAGCGTGCAGTTCGTCTTCCCCCAATACAAGAAATTGGGGAGGCCTTGGAAAGCCATTCACAAGGAGACGAACACCCAAGCAGTACTAGTTTTCCTGATTCTTTTTCTGTGGAGAGATCTTGTACACCACCTGCCGTCACAGAAGTTCACAGGGAAAGAAACATCAATGAAGAAAATTGTTCTCAAGTCCTTGTGCACACTCGAAATGGATCTCAACTTGATATTTCAGGCCTACCTGTGCAAACACAAACTGCTTATCCTTTTTATATGCCAGAAGGTATGATGTCGGCGCAAATGTACCAAAACAACCTGCATGATATGCAAAATCATGCGGCAATGATGTCACAGTATGGTCATTTTCACCATTGCCCTCCGAATGTAAATGGGGTGGCATCTTATCCTTATTACCCTATGAACATATGTTTACAACCTGGTCAAATGCCAACTACCACCAATACTCATTCATGGCCATCTCTTGGGAATTCATCTTCCAATGAAGCAAAATCTAACAAACTTGATAGAAGAGAGGCAGCATTGATTAAATTTAGGCAGAAAAGGAAGGAGCGCTGTTTTGACAAAAAGATTAGGTACGTTAATAGGAAACGGCTTGCTGAGAGAAGGCCTCGCGTGCGTGGCCAGTTTGTAAGAAAGGTAAATGGTGTCAATGTAGATCTTAACGGACAGCCCGCATCTGCTGATGATGTTGAGGATGAAGACGAGGATGAGGAGCTACTATCAAGGGATTCTTCTCATGAGGATGACGGTTCAGGATATTAG 1671 43.21 MDCKELNLNEDCGGCGSGGKNGGDGFIDRSKVRILLCDNDSKSSEEVFKLLLKCSYQVISVSSARQVIDALNAEGPEIDIILSEVDLPMAKGMKMLKYITRDKELRRIPVIMMSTQDEVPIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILNYEFDMVASDPSDANTNSTTLFSDDTDDKSRRSTNPDMGITAPATHQEDEPGIAPTLVEPPAVHSVQHQPDVPGISERRTGQPSSCPRKSELKIGESSAFFTYVKSRTVKNKAVDIEDNAKRLLLDENYQETSQRAVRLPPIQEIGEALESHSQGDEHPSSTSFPDSFSVERSCTPPAVTEVHRERNINEENCSQVLVHTRNGSQLDISGLPVQTQTAYPFYMPEGMMSAQMYQNNLHDMQNHAAMMSQYGHFHHCPPNVNGVASYPYYPMNICLQPGQMPTTTNTHSWPSLGNSSSNEAKSNKLDRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKVNGVNVDLNGQPASADDVEDEDEDEELLSRDSSHEDDGSGY 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25560215 25565043 - MELO3C001999.2.1 Cme12g01975 345192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01975 556 Pfam CCT motif 473 515 IPR010402 GO:0005515
Cme12g01975 556 ProSiteProfiles Response regulatory domain profile. 33 151 IPR001789 GO:0000160
Cme12g01975 556 MobiDBLite consensus disorder prediction 518 556 - -
Cme12g01975 556 Pfam Response regulator receiver domain 34 145 IPR001789 GO:0000160
Cme12g01975 556 MobiDBLite consensus disorder prediction 314 342 - -
Cme12g01975 556 MobiDBLite consensus disorder prediction 529 545 - -
Cme12g01975 556 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR1 4 533 - -
Cme12g01975 556 MobiDBLite consensus disorder prediction 177 256 - -
Cme12g01975 556 PANTHER TWO-COMPONENT RESPONSE REGULATOR 4 533 IPR045279 GO:0009736
Cme12g01975 556 MobiDBLite consensus disorder prediction 320 339 - -
Cme12g01975 556 MobiDBLite consensus disorder prediction 447 465 - -
Cme12g01975 556 MobiDBLite consensus disorder prediction 447 470 - -
Cme12g01975 556 ProSiteProfiles CCT domain profile. 473 515 IPR010402 GO:0005515
Cme12g01975 556 Gene3D - 32 221 - -
Cme12g01975 556 SUPERFAMILY CheY-like 30 158 IPR011006 -
Cme12g01975 556 SMART REC_2 32 147 IPR001789 GO:0000160
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01815 Cme-Chr3:26519205 Cme12g01975 Cme-Chr12:25560215 1.67E-11 dispersed
Cme09g02021 Cme-Chr9:23891816 Cme12g01975 Cme-Chr12:25560215 2.25E-11 dispersed
Cme12g01975 Cme-Chr12:25560215 Cme03g02198 Cme-Chr3:28932154 4.19E-20 dispersed
Cme12g01975 Cme-Chr12:25560215 Cme02g01081 Cme-Chr2:15840669 1.31E-18 transposed
Cme12g01975 Cme-Chr12:25560215 Cme06g00764 Cme-Chr6:5045134 1.42E-18 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42387 PF00072 Response_reg 8.20E-17 CL0304 Cme TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01975 K12127 - csv:101220107 1042.72