Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01977 ATGAACCGCACATTCAATTCATACCCAGATGAAAATTATGCGAATGTTAGGAGATCCATGAGGCAGACTGAGGATGATCATCACAAGAACTTATCGGACAAGGATCCGCACTGTGATTTCAAGAGCAACCATGAATTGAAATTTGGGTTCAGTTCGATTCGAGTAATGGGTATGTTTGTGGTTTTGATGATGTTCATTTCTGTGATTTTTTCGGTCTCTGTGGTTTTTAGAGATCCACCATCGGATGCTGTAATTGAAGGTTCAGATGTGTGGATTCCTCAGTGGAACTCTGACCCAGTAGATTCTAAGGTTGGAGATCTTCAAACAGTTATACAGCCAGTTGATAAACTGCTTAGTGGCCTTCTTTCTGCCAAACATGGGGTTGGTTCTTGTCTCAGTAGGTACAATTCAGTTGCTTATCAACACAAGCTGGCTTACGAACCCTCTTCTTACTTAATCTCCAAATTGCGGGGTTATGAAGATCTTCATAAGCGTTGTGGAGTTTATACTGAATCTTACAACAAAACTTTGGAGCAGCTTAGGTCTAATGGTAGTAGCAGCTCCTCAGACTGTAAATATCTTCTTTGGATTTCCTTCAGTGGGTTAGGGAATAGAATACTAACCCTTACTTCGGCATTTCTTTATGCTCTCCTCACAAATCGAGTTCTTCTAGTTGACCCTGGAACTGACATGGCTGATCTCTTCTGTGAACCATTTCCTGAGGTTTCCTGGTTTCTTCCCCAAGATTTTCCATTAAAAGATGACTTCAGCAGTTTCAACCAGAACTCTCCTAATTGCTATGGGAAAATAATGAAGAATAGCATAATGCCAGATTCAAGTGGAATGATCTTGCCATCTGTTGTTTATCTTCATTTGGTCCATGATTACGATGATGATGATAAGCTTTTCTTCTGTGATCAAGACCAAGCTCTTCTGCAGCAATCTCCTTGGCTTGTTATGAAAACAGACAATTATTTTGTCCCATCTCTCTTTTTGATCCCATCATTCGAGAAAGAACTTAATGATCTTTTCCCAAATAAAGATACAGTTTTCCACTTCTTGGGTCGATATCTGTTCCACCCTGCGAATTCAGTTTGGGGACTGATTACGAGATATTATCACGCTTACTTGGCTAGAGCTAGCGAAAGAATAGGCATTCAAATTAGAGTGTTCGATACAGGAACTGGTCCTTTTCAACACATCCTGGATCAGGTTCTGGACTGCACCCTGAAAGAGAATCTGTTGCCACAAACCGAGAGGCAAATGTATGCCATCGATCCAGTTGGTAATCAAAAGTCAAAGGCTGTGCTGATAACTTCCTTGAGCGCTGGTTACTTTGAGAAGTTAAGAGACATTTACTGGGAGAATCCGACAGTAACTGGGGAGATAATTAGTTTCTACCAACCAAGCCATGAGGAACACCAGCAAACTGAAAAAAGTATACATAACCAGAAGGCATTGGCAGAGATGTATTTGTTAAGTACAACTGATGTATTGGTCACCAGTTCATGGTCGACCTTTGGATACGTGGCTCAAGGTCTTGGTGGTCTGAAGCCATGGATATTGTACAAACCTGAAAATCGTACTGCACCAAATCCACCTTGCCGTCGAGCCATGTCTATGGAGCCTTGTTTCCATGCACCTCCTTTCTACGACTGCAAAGCTAAGAAAGGAGTGGACACTGGTAAACTTGTTCCTCATGTGAGGCACTGTGAGGACATGAGCTGGGGACTTAAGTTGGTTGATGATCCATATGATTGA 1761 41.74 MNRTFNSYPDENYANVRRSMRQTEDDHHKNLSDKDPHCDFKSNHELKFGFSSIRVMGMFVVLMMFISVIFSVSVVFRDPPSDAVIEGSDVWIPQWNSDPVDSKVGDLQTVIQPVDKLLSGLLSAKHGVGSCLSRYNSVAYQHKLAYEPSSYLISKLRGYEDLHKRCGVYTESYNKTLEQLRSNGSSSSSDCKYLLWISFSGLGNRILTLTSAFLYALLTNRVLLVDPGTDMADLFCEPFPEVSWFLPQDFPLKDDFSSFNQNSPNCYGKIMKNSIMPDSSGMILPSVVYLHLVHDYDDDDKLFFCDQDQALLQQSPWLVMKTDNYFVPSLFLIPSFEKELNDLFPNKDTVFHFLGRYLFHPANSVWGLITRYYHAYLARASERIGIQIRVFDTGTGPFQHILDQVLDCTLKENLLPQTERQMYAIDPVGNQKSKAVLITSLSAGYFEKLRDIYWENPTVTGEIISFYQPSHEEHQQTEKSIHNQKALAEMYLLSTTDVLVTSSWSTFGYVAQGLGGLKPWILYKPENRTAPNPPCRRAMSMEPCFHAPPFYDCKAKKGVDTGKLVPHVRHCEDMSWGLKLVDDPYD 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25573140 25576483 + MELO3C001997.2.1 Cme12g01977 345194

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01977 586 Gene3D - 369 529 - -
Cme12g01977 586 PANTHER 2-ALPHA-L-FUCOSYLTRANSFERASE, PUTATIVE-RELATED 31 582 - -
Cme12g01977 586 Pfam Xyloglucan fucosyltransferase 104 554 IPR004938 GO:0008107|GO:0016020|GO:0042546
Cme12g01977 586 PANTHER FUCOSYLTRANSFERASE 2-RELATED 31 582 IPR004938 GO:0008107|GO:0016020|GO:0042546
Cme12g01977 586 Gene3D - 188 241 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01977 K13681 FUT; xyloglucan fucosyltransferase [EC:2.4.1.-] - csv:101219153 1140.56
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g01442 Cme-Chr7:20116417 Cme12g01977 Cme-Chr12:25573140 1.17E-177 dispersed
Cme10g00393 Cme-Chr10:2530034 Cme12g01977 Cme-Chr12:25573140 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g575 . . . . . . . . Cmo13g01199 . . . . . . Cpe20g00012 . . . . . . . . . . . . . . . Cone2ag0834 Cone16ag0180 . . Lsi02g00086 Csa01g00565 Chy12g01529 Cme12g01977 . . . . . . . . . . . Cma13g01145 . Car13g00974 . . . . . . . . . . Cla04g01186 Cam04g1243 Cec01g1754 Cco01g1800 Clacu04g1271 Cmu04g1250 Cre01g1543 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme10g00393 . 101 565 Xyloglucan Fucosyltransferase1 AT1G14080 55.9 2.3e-153 539.3
Cme12g01977 . 113 583 Xyloglucan Fucosyltransferase1 AT1G14080 54.4 3.7e-151 531.9
Cme10g00393 . 99 566 Xyloglucan Fucosyltransferase1 AT1G14100 59.4 2.0e-162 569.3
Cme12g01977 . 115 583 Xyloglucan Fucosyltransferase1 AT1G14100 58.1 5.4e-160 561.2
Cme10g00393 . 79 570 Xyloglucan Fucosyltransferase1 AT1G14110 53.1 2.9e-139 492.3
Cme12g01977 . 112 582 Xyloglucan Fucosyltransferase1 AT1G14110 52.3 6.2e-134 474.6
Cme06g01334 . 1 514 Xyloglucan Fucosyltransferase1 AT1G49710 61.9 1.7e-182 636.0
Cme01g00052 . 128 455 Xyloglucan Fucosyltransferase1 AT1G49710 75.1 1.2e-148 523.5
Cme03g01095 . 7 405 Xyloglucan Fucosyltransferase1 AT1G71990 69.7 3.2e-168 588.2
Cme10g00393 . 97 539 Xyloglucan Fucosyltransferase1 AT1G74420 51.6 9.8e-123 437.6
Cme10g00393 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 56.7 8.6e-183 637.1
Cme12g01977 . 117 583 Xyloglucan Fucosyltransferase1 AT2G03210 60.3 1.4e-169 593.2
Cme07g01442 . 40 521 Xyloglucan Fucosyltransferase1 AT2G03210 50.3 1.1e-137 487.3
Cme10g00393 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 62.5 5.1e-196 681.0
Cme12g01977 . 59 581 Xyloglucan Fucosyltransferase1 AT2G03220 61.8 1.6e-189 659.4
Cme07g01442 . 28 521 Xyloglucan Fucosyltransferase1 AT2G03220 50.8 1.2e-147 520.4
Cme10g00393 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 55.0 3.4e-154 542.0
Cme12g01977 . 95 583 Xyloglucan Fucosyltransferase1 AT2G15350 50.8 2.0e-146 516.2
Cme10g00393 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 53.5 9.3e-147 517.3
Cme12g01977 . 106 583 Xyloglucan Fucosyltransferase1 AT2G15370 50.8 2.6e-141 499.2
Cme10g00393 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 53.2 1.3e-148 523.5
Cme12g01977 . 115 583 Xyloglucan Fucosyltransferase1 AT2G15390 52.3 5.7e-144 508.1
Cme06g01334 . 1 514 Xyloglucan Fucosyltransferase1 AT3G19280 63.0 8.9e-184 640.2
Cme01g00052 . 128 455 Xyloglucan Fucosyltransferase1 AT3G19280 76.8 3.1e-152 535.4
Cme10g00393 . 97 539 Xyloglucan Fucosyltransferase1 AT1G74420 51.6 9.8e-123 437.6
Cme10g00393 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 56.7 8.6e-183 637.1
Cme12g01977 . 117 583 Xyloglucan Fucosyltransferase1 AT2G03210 60.3 1.4e-169 593.2
Cme07g01442 . 40 521 Xyloglucan Fucosyltransferase1 AT2G03210 50.3 1.1e-137 487.3
Cme10g00393 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 62.5 5.1e-196 681.0
Cme12g01977 . 59 581 Xyloglucan Fucosyltransferase1 AT2G03220 61.8 1.6e-189 659.4
Cme07g01442 . 28 521 Xyloglucan Fucosyltransferase1 AT2G03220 50.8 1.2e-147 520.4
Cme10g00393 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 56.7 8.6e-183 637.1
Cme12g01977 . 117 583 Xyloglucan Fucosyltransferase1 AT2G03210 60.3 1.4e-169 593.2
Cme07g01442 . 40 521 Xyloglucan Fucosyltransferase1 AT2G03210 50.3 1.1e-137 487.3
Cme10g00393 . 97 539 Xyloglucan Fucosyltransferase1 AT1G74420 51.6 9.8e-123 437.6
Cme10g00393 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 53.2 1.3e-148 523.5
Cme12g01977 . 115 583 Xyloglucan Fucosyltransferase1 AT2G15390 52.3 5.7e-144 508.1
Cme10g00393 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 53.5 9.3e-147 517.3
Cme12g01977 . 106 583 Xyloglucan Fucosyltransferase1 AT2G15370 50.8 2.6e-141 499.2
Cme10g00393 . 101 565 Xyloglucan Fucosyltransferase1 AT1G14080 55.9 2.3e-153 539.3
Cme12g01977 . 113 583 Xyloglucan Fucosyltransferase1 AT1G14080 54.4 3.7e-151 531.9
Cme10g00393 . 99 566 Xyloglucan Fucosyltransferase1 AT1G14100 59.4 2.0e-162 569.3
Cme12g01977 . 115 583 Xyloglucan Fucosyltransferase1 AT1G14100 58.1 5.4e-160 561.2
Cme10g00393 . 79 570 Xyloglucan Fucosyltransferase1 AT1G14110 53.1 2.9e-139 492.3
Cme12g01977 . 112 582 Xyloglucan Fucosyltransferase1 AT1G14110 52.3 6.2e-134 474.6
Cme10g00393 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 55.0 3.4e-154 542.0
Cme12g01977 . 95 583 Xyloglucan Fucosyltransferase1 AT2G15350 50.8 2.0e-146 516.2
Cme06g01334 . 1 514 Xyloglucan Fucosyltransferase1 AT3G19280 63.0 8.9e-184 640.2
Cme01g00052 . 128 455 Xyloglucan Fucosyltransferase1 AT3G19280 76.8 3.1e-152 535.4
Cme06g01334 . 1 514 Xyloglucan Fucosyltransferase1 AT1G49710 61.9 1.7e-182 636.0
Cme01g00052 . 128 455 Xyloglucan Fucosyltransferase1 AT1G49710 75.1 1.2e-148 523.5
Cme03g01095 . 7 405 Xyloglucan Fucosyltransferase1 AT1G71990 69.7 3.2e-168 588.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012658 0 0 0 0 0 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 29