Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01980 ATGGCTTGTTCGTTGAAATCTGCCCTCTCTGTTTCAGGGCTTAAGGACAATTTGGGTTGCTCTATTTCATCTGGGATTTCTGGGTTTTCTACTTCTATTTCTGCTTCCAATTTAAAAGGGTCTAAGCAGCCAGGGTTTCCTGTTTTGAAAGTCGATTTCTTGGGGACACCTGTAGTGATTTCGGATCAAAATGGTGTTACGAACTCAAACCCTAAAACCCCAAATCGCTTTACCATTAATGCACAGACGTCTATTTGTATAAGCCGAGCTCGGAGATGGTGGGAAAAAGCTTCAAAACCTAATATGGTGGAGATCCACTCTGCCCAAGACCTTGTGGATGCATTGCTTGATGCTGGCGATAGATTGGCCATTATAGACTTCTATTCTCCTGGCTGTGGAGGTTGCAAAGCTCTTCATCCTAAGATCTGTCAACTGGCTGAATTGAACCCTGATGCAATTTTTCTCAAAGTTAACTTTGAGGAGCTCAAAACCATGTGCCAAGCTCTTCATGTTCGTGTTCTTCCTTTCTTTAGATTCTATAGAGGTGGAGAAGGTCGTGTTTGTAGCTTTAGCTGTACAAATGCAACTATTAAGAAATTCAAGGATGCATTGGCAAAACATGGAACCGACCGGTGTAGCATCCTTCCAGCTAAAGGATTAGACGAGTCCGAGCTCCAACAGTTGGTAATGGCAGGTGAATTATCATTAAGTTCACCATCACCATATCTCAAGGAAAGAGCATTGAAGGATCTAGTGATGAGAGATATGGATTCTTATGGTTCTTGGAGCAGATCAAGCAATAAAATGGATCTCATGGAAGACGATAACTTGATTCTTAAGGTTTAA 846 41.84 MACSLKSALSVSGLKDNLGCSISSGISGFSTSISASNLKGSKQPGFPVLKVDFLGTPVVISDQNGVTNSNPKTPNRFTINAQTSICISRARRWWEKASKPNMVEIHSAQDLVDALLDAGDRLAIIDFYSPGCGGCKALHPKICQLAELNPDAIFLKVNFEELKTMCQALHVRVLPFFRFYRGGEGRVCSFSCTNATIKKFKDALAKHGTDRCSILPAKGLDESELQQLVMAGELSLSSPSPYLKERALKDLVMRDMDSYGSWSRSSNKMDLMEDDNLILKV 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25588365 25590108 - MELO3C001994.2.1 Cme12g01980 345197

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01980 281 Gene3D Glutaredoxin 90 209 - -
Cme12g01980 281 PANTHER THIOREDOXIN-LIKE 1-2, CHLOROPLASTIC 1 267 - -
Cme12g01980 281 Pfam Thioredoxin 115 190 IPR013766 -
Cme12g01980 281 PANTHER THIOREDOXIN, MITOCHONDRIAL 1 267 - -
Cme12g01980 281 SUPERFAMILY Thioredoxin-like 90 208 IPR036249 -
Cme12g01980 281 CDD TRX_family 118 205 - -
Cme12g01980 281 ProSiteProfiles Thioredoxin domain profile. 37 234 IPR013766 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01980 - - - csv:101219391 521.931
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01788 Cme-Chr4:25577201 Cme12g01980 Cme-Chr12:25588365 7.91E-77 dispersed
Cme06g00100 Cme-Chr6:631752 Cme12g01980 Cme-Chr12:25588365 6.39E-43 dispersed
Cme12g01980 Cme-Chr12:25588365 Cme03g01919 Cme-Chr3:27287107 2.05E-10 dispersed
Cme12g01980 Cme-Chr12:25588365 Cme04g00516 Cme-Chr4:4248737 7.08E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g568 Blo04g00776 Blo16g00183 . . . Bpe13g00297 . . Cmo13g01195 . . . . . . Cpe20g00014 . . . . . . . . . . . . . . . Cone2ag0839 Cone16ag0176 . . Lsi02g00083 Csa01g00562 Chy12g01531 Cme12g01980 . . . . . . . . Sed08g2081 . . Cma13g01140 . Car13g00971 . . . Bhi08g01145 Tan05g2429 . . Hepe07g2500 . . Cla04g01189 Cam04g1246 Cec01g1757 Cco01g1802 Clacu04g1274 Cmu04g1253 Cre01g1546 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007323 0 2 2 0 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 1 1 1 1 1 4 2 1 37