Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01981 ATGGGATCAGTTAATGTTGGAATATTGGTATTAGGGATGTTTTGTTTGCTGTCTTTGGTTGATGGAAAATATGGTGGTGGACGTCGACGTGGAGGTGGCCCATGGATCACTGACGCTCATGCTACTTTCTATGGCGGTCCCGACGCTTCTGGTACTGCAGGTGGGTCATGTGGATATGGAAGTGGGTATGACTATGGGAGTATGACGACGGCGTTGAGTCCAGCATTGTACGACAATGGGCTAAGCTGTGGTGCTTGTTTTGAGGTTAAATGTATAAATAACCCACAATGGTGCCTTCCCGGCTCCGTCGTTGTCACCGCCACCAACTACTGTCCTCCCGGCGGTTGGTGCGACCCTTCCCTCCATCACTTTGATCTCTCCCAACCTGCTTTCCAAACCATTGCTAATCCCATCGCCGGGGTCGTTCCCGTTGCTTATCGCAGGGTTAAATGTGGAAGGAGAGGAGGAATAAAGTTCCAAATAAATGGGAATCCATATTTCAATTTGGTATTGATAAGCAATGTGGGAGGTGCTGGAGATGTTCGTGCTGTTTACATCAAAGGGGGTAGGGGAAGGTTTAATTATTGGAAGGCAATGACTAGAAATTGGGGTCAAAACTGGCAAAGCGATGACTATCTTATTGGGAAACCCTTGTCTTTTAAGGTCATTACTAGCGATGGTCGCTCACTTGTGTCTTACAATGTTGCCCCTCCCAATTGGTCATTTGGACAAACCTATATTGGCAGACAGTTCCTTTGA 759 47.17 MGSVNVGILVLGMFCLLSLVDGKYGGGRRRGGGPWITDAHATFYGGPDASGTAGGSCGYGSGYDYGSMTTALSPALYDNGLSCGACFEVKCINNPQWCLPGSVVVTATNYCPPGGWCDPSLHHFDLSQPAFQTIANPIAGVVPVAYRRVKCGRRGGIKFQINGNPYFNLVLISNVGGAGDVRAVYIKGGRGRFNYWKAMTRNWGQNWQSDDYLIGKPLSFKVITSDGRSLVSYNVAPPNWSFGQTYIGRQFL 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25595789 25597038 + MELO3C001993.2.1 Cme12g01981 345198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01981 252 PRINTS Expansin signature 64 78 IPR002963 GO:0009664
Cme12g01981 252 PRINTS Expansin signature 91 102 IPR002963 GO:0009664
Cme12g01981 252 PRINTS Expansin signature 103 113 IPR002963 GO:0009664
Cme12g01981 252 PRINTS Expansin signature 114 131 IPR002963 GO:0009664
Cme12g01981 252 PRINTS Expansin signature 131 144 IPR002963 GO:0009664
Cme12g01981 252 PRINTS Expansin signature 155 167 IPR002963 GO:0009664
Cme12g01981 252 PRINTS Expansin signature 167 188 IPR002963 GO:0009664
Cme12g01981 252 PRINTS Expansin signature 234 250 IPR002963 GO:0009664
Cme12g01981 252 Pfam Lytic transglycolase 69 146 IPR009009 -
Cme12g01981 252 PRINTS Expansin/Lol pI family signature 35 50 IPR007118 GO:0005576
Cme12g01981 252 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576
Cme12g01981 252 PRINTS Expansin/Lol pI family signature 139 155 IPR007118 GO:0005576
Cme12g01981 252 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576
Cme12g01981 252 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Cme12g01981 252 SUPERFAMILY PHL pollen allergen 153 247 IPR036749 -
Cme12g01981 252 SUPERFAMILY Barwin-like endoglucanases 35 174 IPR036908 -
Cme12g01981 252 PANTHER EXPANSIN-A15 24 251 IPR002963 GO:0009664
Cme12g01981 252 PANTHER EXPANSIN 24 251 - -
Cme12g01981 252 SMART dpbb_1 69 146 IPR007112 -
Cme12g01981 252 Gene3D - 28 151 IPR036908 -
Cme12g01981 252 Gene3D - 152 251 IPR036749 -
Cme12g01981 252 Pfam Expansin C-terminal domain 157 237 IPR007117 -
Cme12g01981 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 248 IPR007117 -
Cme12g01981 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 54 156 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme12g01981 Cme-Chr12:25595789 Cme05g00939 Cme-Chr5:12976236 2.79E-101 dispersed
Cme10g00403 Cme-Chr10:2578552 Cme12g01981 Cme-Chr12:25595789 9.90E-107 wgd
Cme12g01981 Cme-Chr12:25595789 Cme02g01876 Cme-Chr2:25344916 4.87E-96 wgd
Cme12g01981 Cme-Chr12:25595789 Cme09g00257 Cme-Chr9:1954077 2.82E-111 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01981 K20628 - csv:101218913 449.899