Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01987 ATGTTGGATTCTAAAGATCCTACTATTAAGCTTTTCGGCCGTCAAATCCCACTTTCCGACGACGCTGAAACTCCGGCGGTTCTTTCACATGACTTCTCTTCTCACAAACATCCAGAACCCAGAAAGGATGCAGCTATTGATGAACCTGAAAAACCTGTTGATGATTCAGATGACTTAAGAAATATAGAGAGAGAGGAAGAGGCGGCTAGTGTGAATCCTAAAACGCCATCTATAGATGAAGAAACTACTACGACGCCTGTTAATGGAGAACCGGAGAGTGAAAAATCTAATTCAGAGAAAACTCTAAAGAAGCCTGATAAACTGCTTCCATGTCCTCGCTGTAAAAGTATGGAGACAAAATTCTGTTACTACAACAATTACAATGTCAATCAACCTCGCCATTTTTGTAAAGCTTGTCAAAGATATTGGACTGCTGGTGGCACCATGAGGAACGTGCCGGTAGGAGCTGGTCGTCGGAAGAGCAAAAACTCTGCTTCTTATTACCGTCACATAACTATCTCTGAGGCTCTTGAAGCTGCTCGAATTGAGTCTCCAAATGGAACCCAAAAACCAAAATTCATTAACAACAATGGCAGAGTCTTAAGTTTCAATTTGGATGCACCAAGTTCTGATCCTGTGATGGGTTCTATTTTAAACCTTGGAGAAAACAGAGTTTTGAGTAATGGGGTAAAGAAGTTTGAAGAGAAAGCAGTTGATCAAGGGTGTGAAAAAAACTCGAGTTTGTCTTCCATGCCAGTTCAAAGTTCATCAGAATTGAAAATCAATGGCTTCCCTTCTCAAATTTCATGTCTTTCTGGAGTTCCATGGCCTTTTGTTTGGAATTCATCAGTTCCTCCACCAACCTTTACCCCTCCAGGATTTCCCTTGTCTTTTTTTCCAGCAGCTGCTTGGAACTCTGGAGTTCCTGGACCATGGAACACTCCATGGTTTTCACCACAACCTGAAAAATCTCTATGTTCTGACACTAAAGCTTCTTCAACACTGGGAAAGCATCAAAGAGACCACGAAATGGCCAAAGAAGATGCCATCTCAAGTAAAGAAGAGGTTTTTAAGCAAAGAAATGGACATGTGTTGACCCCAAAAACTTTAAGAATTGATGATCCGAGTGAGGCTGCAAAAAGTTCCATATGGGCAACACTTGGAATAAAGAATGAATCACTCACTGGAGGGAAAAATCTATTCAAAACCTTTCAACCTAAAGGCCATCAGAAGGTTCATGTGGCTGAAACCTCCTCAGTTTTGCAGGCAAATCCTGCAGCCTTGTCAAGATCTCTCGTCTTTCACGAGAGCTCTTGA 1317 41.69 MLDSKDPTIKLFGRQIPLSDDAETPAVLSHDFSSHKHPEPRKDAAIDEPEKPVDDSDDLRNIEREEEAASVNPKTPSIDEETTTTPVNGEPESEKSNSEKTLKKPDKLLPCPRCKSMETKFCYYNNYNVNQPRHFCKACQRYWTAGGTMRNVPVGAGRRKSKNSASYYRHITISEALEAARIESPNGTQKPKFINNNGRVLSFNLDAPSSDPVMGSILNLGENRVLSNGVKKFEEKAVDQGCEKNSSLSSMPVQSSSELKINGFPSQISCLSGVPWPFVWNSSVPPPTFTPPGFPLSFFPAAAWNSGVPGPWNTPWFSPQPEKSLCSDTKASSTLGKHQRDHEMAKEDAISSKEEVFKQRNGHVLTPKTLRIDDPSEAAKSSIWATLGIKNESLTGGKNLFKTFQPKGHQKVHVAETSSVLQANPAALSRSLVFHESS 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25615555 25617940 - MELO3C001987.2.1 Cme12g01987 345204

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01987 438 PANTHER CYCLIC DOF FACTOR 2 1 437 IPR045174 GO:0003700|GO:0006355
Cme12g01987 438 MobiDBLite consensus disorder prediction 320 350 - -
Cme12g01987 438 PANTHER CYCLIC DOF FACTOR 1 1 437 - -
Cme12g01987 438 ProSitePatterns Zinc finger Dof-type signature. 111 147 IPR003851 GO:0003677|GO:0006355
Cme12g01987 438 ProSiteProfiles Zinc finger Dof-type profile. 109 163 IPR003851 GO:0003677|GO:0006355
Cme12g01987 438 MobiDBLite consensus disorder prediction 14 106 - -
Cme12g01987 438 MobiDBLite consensus disorder prediction 30 70 - -
Cme12g01987 438 Pfam Dof domain, zinc finger 107 163 IPR003851 GO:0003677|GO:0006355
Cme12g01987 438 MobiDBLite consensus disorder prediction 75 92 - -
Cme12g01987 438 MobiDBLite consensus disorder prediction 334 350 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01987 - - - csv:101219706 818.92
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme02g01879 Cme12g01987 CCT
Cme02g01879 Cme12g01987 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01994 Cme-Chr4:27555012 Cme12g01987 Cme-Chr12:25615555 4.30E-103 dispersed
Cme04g02074 Cme-Chr4:28135944 Cme12g01987 Cme-Chr12:25615555 1.36E-09 dispersed
Cme08g00224 Cme-Chr8:1511220 Cme12g01987 Cme-Chr12:25615555 3.65E-36 dispersed
Cme12g01293 Cme-Chr12:21014709 Cme12g01987 Cme-Chr12:25615555 5.95E-37 dispersed
Cme12g01987 Cme-Chr12:25615555 Cme11g01764 Cme-Chr11:25878348 1.58E-25 dispersed
Cme10g00408 Cme-Chr10:2599811 Cme12g01987 Cme-Chr12:25615555 4.56E-74 wgd
Cme12g01987 Cme-Chr12:25615555 Cme02g01879 Cme-Chr2:25356039 1.00E-128 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g562 . . . . Bpe12g00543 . . . Cmo13g01192 . Cma10g00196 Cma11g00141 Car10g00186 Car11g00154 . Cpe20g00016 Cpe04g01497 . . . . . . . Cla06g01588 Cam06g1757 Cec06g1813 Cco06g1816 Clacu06g1723 Cmu06g1666 Cre06g2480 . . . . Lsi02g00077 Csa01g00554 Chy12g01536 Cme12g01987 . . . . . . . Bma08g00224 Sed02g0836 Cmo10g00211 Cmo11g00169 Cma13g01138 . Car13g00968 . . Cpe18g00789 Bhi08g01160 Tan05g2435 Cmetu12g0332 Lac10g0082 Hepe07g2505 . . Cla04g01194 Cam04g1252 Cec01g1763 Cco01g1810 Clacu04g1282 Cmu04g1258 Cre01g1552 Lsi06g01460 Csa01g00239 Chy02g02493 Cme02g01879
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011465 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 3 1 0 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42390 PF02701 zf-Dof 3.90E-32 No_clan Cme TF