Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01997 ATGACAGAGGAAAACAAAGTGGTGCTTTATGGATTGTGGGCTAGTCCTTTTGTAAAGAGGGTCGAACTCGCCCTTAAAATCAAAGGTATCCCTTTTGAATATGTAGAAGAAGATTTTCTAAACAAAAGCCCGGAGCTTCTCAAATTCAATCCTGTTTATAAGAAAGTTCCTGTACTCGTCCACAATGGAAGATCCATTTGCGAATCAGCTATAATTTTTGAGTACATAGAGGAAGTTTGGAACGACAATGGCCCTTCTCTTCTACCTCAAGATCCCTACAAACGATCCCAGGTTCGATTCTGGGCTGATTTCGTTCAGAATCAGGTACATATATTTTATACAATAATTGGTGTTCTTGACTTGTATTGTTCTTCCGGCCAATACACCCTTTTAGGCGAATAA 402 39.3 MTEENKVVLYGLWASPFVKRVELALKIKGIPFEYVEEDFLNKSPELLKFNPVYKKVPVLVHNGRSICESAIIFEYIEEVWNDNGPSLLPQDPYKRSQVRFWADFVQNQVHIFYTIIGVLDLYCSSGQYTLLGE 133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25679891 25680360 - MELO3C001978.2.1 Cme12g01997 345214

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01997 133 SFLD Glutathione Transferase (cytosolic) 8 112 IPR040079 -
Cme12g01997 133 Gene3D Glutaredoxin 1 87 - -
Cme12g01997 133 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 1 108 IPR045073 -
Cme12g01997 133 Pfam Glutathione S-transferase, N-terminal domain 7 77 IPR004045 -
Cme12g01997 133 SFLD Main (cytGST) 8 112 - -
Cme12g01997 133 CDD GST_N_Tau 7 80 - -
Cme12g01997 133 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 5 84 IPR004045 -
Cme12g01997 133 PANTHER GLUTATHIONE S-TRANSFERASE 1 108 - -
Cme12g01997 133 Gene3D - 88 120 - -
Cme12g01997 133 SUPERFAMILY Thioredoxin-like 5 109 IPR036249 -
Cme12g01997 133 ProSiteProfiles Glutaredoxin domain profile. 1 95 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01997 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - cmo:103488771 238.424
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme12g01997 Cme-Chr12:25679891 Cme12g02002 Cme-Chr12:25683525 1.96E-74 dispersed
Cme12g01997 Cme-Chr12:25679891 Cme12g01998 Cme-Chr12:25680735 2.51E-70 tandem
Cme02g01677 Cme-Chr2:23911589 Cme12g01997 Cme-Chr12:25679891 4.86E-06 transposed
Cme10g00419 Cme-Chr10:2647426 Cme12g01997 Cme-Chr12:25679891 2.12E-38 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g546 . Blo16g00186 . . . . . . Cmo13g01185 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00069 Csa01g00542 Chy12g01546 Cme12g01997 . . . . . . . . . . . Cma13g01130 . . . . . Bhi08g01176 . . Lac10g0072 . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001282 1 2 2 3 1 3 0 4 4 3 1 4 2 5 2 1 4 1 1 2 3 3 1 6 4 1 2 3 2 4 75