Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g02004 ATGAAGAGGCTTGTTTCCGTTAAAAAAAAAACTATAGGAATTCAAGTGACAAAAGTTCTAGAAGTGGCAGAATTGTACGATGAAAAGAAACGAATTTCATCCCTTAACATCATAGGTCAGGAAGTTGGTAAAAGTGTGATAAATGAGTATTTGCGGCTGCGAGGTCATTCTGACCTCTGCAGCAAAACGTTGGATGTTCCAACTTCAACCTTACATACCTATGTCAAGCCACCCTCCCATGAAGGTTCTTTTGGTGGATCCAAGAAACCTGTTAAAACACCAAAAACCATTTCTATCTCCAGTAAAGAGATAGAACCAAAGAAGGCTACTAGCTCTAGTAACGTGGACAGCCAGGTTTCATTGGATCCTCGCAATTCATCATCTGGCAAAGGGAATCAAAGTTCGTCTAGAAAGAAGAAGGCTACCAAAGTTGTTTCTCTGGCTGAAGCTGCCAAAGGATCAATTGTGTTCCAGCAGGGAAAACCATGTTCATGCCAAGCTCGTCGTCATAGACTAGTGAGCAATTGTTTATCATGTGGCAAGATTGTATGTGAACAAGAGGGAGAAGGCCCATGCAGTTTTTGTGGATCCCTTGTGCTGAGAGAAGGGAGCACTTATGCTGGTATGGATGAAGGTTTTACCCCACTTTCAGATGCTGAAGCAGCAGCTGAAGCTTATGCGAAAAGGTTAGTTGAATATGACAGAAACTCTGCTGCAAGAACCTCTGTAATCGATGATCAAAGTGATTATTACCAGATTGAGGGCAATAGCTGGTTGTCTAATGAGGAAAAGGAGCTTTTGAGAAAGAAACAAGAGGAGATTGAAGAGGCTGAACGAGCTAAACGAAACAAAGTGGTTGTAACCTTTGACTTGGTTGGCCGCAAGGTTCTTTTGAATGAAGATGATTCTTCTGAACTTGAATCACACACCAATATCTTGCGGCGAGCAGATGAAAGAGAAGTGAACAGAATTAAACCAAATCCATCTCTTCAAATACATCCTGTCTTTTTAGATCCAGGCCCCAGAGAGAAATCCACCAAAGACAGAAACTCAAACAAAGCCGTTAGCAAAAAAGGCATTTGTCTGGAAATTACTGGAAGGGTGCAGCATGATAGCAATGAATTGAAGCATTTTATGATCGAAAATGAGTTGGAAACTAAATGCAAAACCCATCCTCCCAATGTTTTGTCTTCATATCTTACACCAAATGAAGACAAATTTCTACAGAAGAATCCTCCTGTGAAATCTGAACAGCAGCAACTTCCTTATGCTATCAGTTCAAACCAAAAGGCTTTGTGTTCCAAAAACATGAAGAAGACGGCAAGTGCAGAAGAGGAAATTGGAGTTTTCAGAGCTGAAAGGTACTATGGCATGAAATTGGAAGATGACAGCACAAGAGTTGTTGAGAATTGTGGTAGCAACTGTGCAAAGAAGAAAGAACAACGACCTGATGTGCAATATAGGAGACAAAAGAGCAGATCAGGAACTTCAAGTGTGACTTCTGAATCAAGTTGGAATAGCCAAACTGCTTTATTTCCAAGTTTTTTGAGAAATTCATCTCAAAACATTCAAAACAAGACAAAAGGAAGAAGCCTGTTGGTCAACCTTACCTGCAACAGGTCTTGTTCTGATAAAAAGTCTATTCTTGTCCATAGGAATTTGCAAGGACAAAAAGGATTGCAAGGGAATGATGTCAAAAAAGAAACTACTAGGAATGAGCAAAATCATATCATCGTGGATGGTAGAATGAAGTTTCAAACAGCTACTATGGTAAAACACAAACCAAAAAGTTCAATTTCTGGTGTGACAACAAGAGAAGAGGAGTTGGTATTTCCAATTTCAAACTCTCAATTGCAAAATCTTGCAAAGATTCAGGATGAAGATCCGAGAAAATCCATTGAAGTATTTGGCTCAAACAAGTTGGATAAGAAAGACTTGGTGGCTAAGAATCTAGAGAAAAAATTGTCTGTTCTAAAATGGGATGCCATTCCAAAAGCCAAGGCCACTCAAACTGCTCCAAGAAGCGATCAAATGATTGAAGATGTAGGGAGCGATGCAAGTTCCGATCTGTTCGAGATCGAAAACATATCTGGAATTAATGGAAAGCCATTCACAAGACATACTTCGGAAGTTATATCAAGCTCCGTGACAGCTTATGAGCCAAGTGAAGCCAGTATTGAATGGAGTGCAGTCACCGCCAGTGCAGCTGATTTCTCATCTGTTGCAGACTATGATGAAAAGAAAGTCACAGCCAGGACTAAAACCACACAACTGGACAAGGATTTGCAGAAAAGTCACCATGGTGGACTATTAGGCTGTAAAAGTCACAAGGCAGTTAGCATAGCTGAAACTGCATACAGAAATATTGAGAAGTTGAATTCTGATTCTAGACGTTTCCCAAGATTGGACTCGACCATGATCGCTACTAATGCAACAGGCTGA 2442 40.34 MKRLVSVKKKTIGIQVTKVLEVAELYDEKKRISSLNIIGQEVGKSVINEYLRLRGHSDLCSKTLDVPTSTLHTYVKPPSHEGSFGGSKKPVKTPKTISISSKEIEPKKATSSSNVDSQVSLDPRNSSSGKGNQSSSRKKKATKVVSLAEAAKGSIVFQQGKPCSCQARRHRLVSNCLSCGKIVCEQEGEGPCSFCGSLVLREGSTYAGMDEGFTPLSDAEAAAEAYAKRLVEYDRNSAARTSVIDDQSDYYQIEGNSWLSNEEKELLRKKQEEIEEAERAKRNKVVVTFDLVGRKVLLNEDDSSELESHTNILRRADEREVNRIKPNPSLQIHPVFLDPGPREKSTKDRNSNKAVSKKGICLEITGRVQHDSNELKHFMIENELETKCKTHPPNVLSSYLTPNEDKFLQKNPPVKSEQQQLPYAISSNQKALCSKNMKKTASAEEEIGVFRAERYYGMKLEDDSTRVVENCGSNCAKKKEQRPDVQYRRQKSRSGTSSVTSESSWNSQTALFPSFLRNSSQNIQNKTKGRSLLVNLTCNRSCSDKKSILVHRNLQGQKGLQGNDVKKETTRNEQNHIIVDGRMKFQTATMVKHKPKSSISGVTTREEELVFPISNSQLQNLAKIQDEDPRKSIEVFGSNKLDKKDLVAKNLEKKLSVLKWDAIPKAKATQTAPRSDQMIEDVGSDASSDLFEIENISGINGKPFTRHTSEVISSSVTAYEPSEASIEWSAVTASAADFSSVADYDEKKVTARTKTTQLDKDLQKSHHGGLLGCKSHKAVSIAETAYRNIEKLNSDSRRFPRLDSTMIATNATG 813
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25691756 25696414 + MELO3C001974.2.1 Cme12g02004 345221

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g02004 813 MobiDBLite consensus disorder prediction 330 355 - -
Cme12g02004 813 Pfam Putative zinc finger motif, C2HC5-type 161 201 IPR009349 GO:0005634|GO:0006355|GO:0008270
Cme12g02004 813 PANTHER TRANSCRIPTION REGULATOR/ ZINC ION BINDING PROTEIN 21 389 - -
Cme12g02004 813 Coils Coil 216 236 - -
Cme12g02004 813 MobiDBLite consensus disorder prediction 340 354 - -
Cme12g02004 813 PANTHER THYROID RECEPTOR INTERACTING PROTEIN RELATED 21 389 IPR039128 -
Cme12g02004 813 MobiDBLite consensus disorder prediction 478 503 - -
Cme12g02004 813 Coils Coil 260 287 - -
Cme12g02004 813 MobiDBLite consensus disorder prediction 74 141 - -
Cme12g02004 813 MobiDBLite consensus disorder prediction 93 141 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g02004 K23398 TRIP4; activating signal cointegrator 1 - csv:101218524 793.882
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00916 Cme-Chr5:12445627 Cme12g02004 Cme-Chr12:25691756 2.58E-22 dispersed
Cme04g02172 Cme-Chr4:28950878 Cme12g02004 Cme-Chr12:25691756 4.59E-15 transposed
Cme10g00422 Cme-Chr10:2663800 Cme12g02004 Cme-Chr12:25691756 1.90E-33 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g539 Blo04g00769 . . . . Bpe13g00286 . . Cmo13g01179 . . . . . . Cpe20g00025 . . . . . . . . . . . . . . . . . . . Lsi02g00066 Csa01g00538 Chy12g01550 Cme12g02004 . . . Bda14g00848 . Bpe15g00603 . . . . . . . Car13g00960 . . . . . . . . . . Cla04g01205 Cam04g1271 Cec01g1779 Cco01g1826 Clacu04g1299 Cmu04g1275 Cre01g1565 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008262 1 1 3 0 2 1 2 1 1 1 1 1 1 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 1 35