Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g02008 ATGGAAGGAAATGACCAACTTCACTATCACCAAAACCATCGCTCAAATGCTTCTTTTCCTCTTCAATTGTTAGAGAAGAAAGAATACGATCCTCAACCTCCTCTTGAGATCGTCTCTAAGAAGCCCTCTCCCAAGAGGACTTCTACTAAGGACCGCCACACCAAAGTCGATGGCCGAGGCCGACGCACCCGAATGCCTGCTCTTTGTGCTGCTAGAGTTTTTCAGCTCACTCGTGAGCTTGGCCACAAGTCTGATGGCGAAACGATCGAATGGCTTCTTCAGCAGGCCGAGCCTGCAGTTATTGCCGCTACGGGAACTGGAACGATACCGGCTAACTTCAACTCTCTTAATACGTCGTTAAGAAGATCGGCTACCAGCATTTCTTTACCATCTCAACTAAGATCCTCTTCTTATTACCACCCGGGAGTGATGGGATTCAACTCTGAAGCAATGAATAATATGGTTCAAATTACGACACAATTACCAAAAGAAGATCATCAGTATCATCTTCACCAATCTACCACCACCGGAGTAGTCCCCCCCACTAATATTCCGGCAAACTTTTGGATGCTTTCCGATCCCAACAACCAATTACTCGCCAGCGGAGTTGACCCTTTATGGAGGCTTCAGTCGGCTAATCAAGACGGCTCTTTATTCAGATCAGGACAATCCTCACCCTCCGGTGGTTTACGTTTATCGAATAATATTCTCGGCCCTGCTCCATTGACGCTCCTCCCAGGAAAGCCACTCTCTTTGGGACCCACTGCCGGAGCTGCACGACGTGGAAACTTGAACGATCATGATGATGATGATGATGATGATGATGGACACTTGAATATCTATGCCGCCCAAAATCCACCGCATGGAGCGGCGCCGGACACCGGCGTCTCGTAA 894 48.43 MEGNDQLHYHQNHRSNASFPLQLLEKKEYDPQPPLEIVSKKPSPKRTSTKDRHTKVDGRGRRTRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFNSLNTSLRRSATSISLPSQLRSSSYYHPGVMGFNSEAMNNMVQITTQLPKEDHQYHLHQSTTTGVVPPTNIPANFWMLSDPNNQLLASGVDPLWRLQSANQDGSLFRSGQSSPSGGLRLSNNILGPAPLTLLPGKPLSLGPTAGAARRGNLNDHDDDDDDDDGHLNIYAAQNPPHGAAPDTGVS 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25710988 25713753 + MELO3C001972.2.1 Cme12g02008 345225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g02008 297 MobiDBLite consensus disorder prediction 43 61 - -
Cme12g02008 297 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 38 156 IPR005333 GO:0003700
Cme12g02008 297 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 160 286 IPR005333 GO:0003700
Cme12g02008 297 MobiDBLite consensus disorder prediction 247 297 - -
Cme12g02008 297 ProSiteProfiles TCP domain profile. 49 103 IPR017887 -
Cme12g02008 297 Pfam TCP family transcription factor 47 153 IPR017887 -
Cme12g02008 297 PANTHER TRANSCRIPTION FACTOR TCP23 160 286 - -
Cme12g02008 297 PANTHER TRANSCRIPTION FACTOR TCP23 38 156 - -
Cme12g02008 297 MobiDBLite consensus disorder prediction 1 61 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme02g01890 Cme12g02008 CCT
Cme02g01890 Cme12g02008 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01771 Cme-Chr6:20554511 Cme12g02008 Cme-Chr12:25710988 5.34E-38 dispersed
Cme10g00786 Cme-Chr10:5105118 Cme12g02008 Cme-Chr12:25710988 2.63E-37 dispersed
Cme11g02340 Cme-Chr11:30437155 Cme12g02008 Cme-Chr12:25710988 4.59E-39 dispersed
Cme11g02537 Cme-Chr11:31804195 Cme12g02008 Cme-Chr12:25710988 2.99E-37 dispersed
Cme10g00701 Cme-Chr10:4410767 Cme12g02008 Cme-Chr12:25710988 2.77E-44 transposed
Cme10g00425 Cme-Chr10:2683489 Cme12g02008 Cme-Chr12:25710988 5.56E-61 wgd
Cme12g02008 Cme-Chr12:25710988 Cme02g01890 Cme-Chr2:25419111 1.72E-10 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42393 PF03634 TCP 8.20E-36 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g02008 - - csv:101218047 568.926