Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g02008 ATGGAAGGAAATGACCAACTTCACTATCACCAAAACCATCGCTCAAATGCTTCTTTTCCTCTTCAATTGTTAGAGAAGAAAGAATACGATCCTCAACCTCCTCTTGAGATCGTCTCTAAGAAGCCCTCTCCCAAGAGGACTTCTACTAAGGACCGCCACACCAAAGTCGATGGCCGAGGCCGACGCACCCGAATGCCTGCTCTTTGTGCTGCTAGAGTTTTTCAGCTCACTCGTGAGCTTGGCCACAAGTCTGATGGCGAAACGATCGAATGGCTTCTTCAGCAGGCCGAGCCTGCAGTTATTGCCGCTACGGGAACTGGAACGATACCGGCTAACTTCAACTCTCTTAATACGTCGTTAAGAAGATCGGCTACCAGCATTTCTTTACCATCTCAACTAAGATCCTCTTCTTATTACCACCCGGGAGTGATGGGATTCAACTCTGAAGCAATGAATAATATGGTTCAAATTACGACACAATTACCAAAAGAAGATCATCAGTATCATCTTCACCAATCTACCACCACCGGAGTAGTCCCCCCCACTAATATTCCGGCAAACTTTTGGATGCTTTCCGATCCCAACAACCAATTACTCGCCAGCGGAGTTGACCCTTTATGGAGGCTTCAGTCGGCTAATCAAGACGGCTCTTTATTCAGATCAGGACAATCCTCACCCTCCGGTGGTTTACGTTTATCGAATAATATTCTCGGCCCTGCTCCATTGACGCTCCTCCCAGGAAAGCCACTCTCTTTGGGACCCACTGCCGGAGCTGCACGACGTGGAAACTTGAACGATCATGATGATGATGATGATGATGATGATGGACACTTGAATATCTATGCCGCCCAAAATCCACCGCATGGAGCGGCGCCGGACACCGGCGTCTCGTAA 894 48.43 MEGNDQLHYHQNHRSNASFPLQLLEKKEYDPQPPLEIVSKKPSPKRTSTKDRHTKVDGRGRRTRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFNSLNTSLRRSATSISLPSQLRSSSYYHPGVMGFNSEAMNNMVQITTQLPKEDHQYHLHQSTTTGVVPPTNIPANFWMLSDPNNQLLASGVDPLWRLQSANQDGSLFRSGQSSPSGGLRLSNNILGPAPLTLLPGKPLSLGPTAGAARRGNLNDHDDDDDDDDGHLNIYAAQNPPHGAAPDTGVS 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25710988 25713753 + MELO3C001972.2.1 Cme12g02008 345225

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g02008 297 MobiDBLite consensus disorder prediction 43 61 - -
Cme12g02008 297 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 38 156 IPR005333 GO:0003700
Cme12g02008 297 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 160 286 IPR005333 GO:0003700
Cme12g02008 297 MobiDBLite consensus disorder prediction 247 297 - -
Cme12g02008 297 ProSiteProfiles TCP domain profile. 49 103 IPR017887 -
Cme12g02008 297 Pfam TCP family transcription factor 47 153 IPR017887 -
Cme12g02008 297 PANTHER TRANSCRIPTION FACTOR TCP23 160 286 - -
Cme12g02008 297 PANTHER TRANSCRIPTION FACTOR TCP23 38 156 - -
Cme12g02008 297 MobiDBLite consensus disorder prediction 1 61 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g02008 - - - csv:101218047 568.926
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme02g01890 Cme12g02008 CCT
Cme02g01890 Cme12g02008 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01771 Cme-Chr6:20554511 Cme12g02008 Cme-Chr12:25710988 5.34E-38 dispersed
Cme10g00786 Cme-Chr10:5105118 Cme12g02008 Cme-Chr12:25710988 2.63E-37 dispersed
Cme11g02340 Cme-Chr11:30437155 Cme12g02008 Cme-Chr12:25710988 4.59E-39 dispersed
Cme11g02537 Cme-Chr11:31804195 Cme12g02008 Cme-Chr12:25710988 2.99E-37 dispersed
Cme10g00701 Cme-Chr10:4410767 Cme12g02008 Cme-Chr12:25710988 2.77E-44 transposed
Cme10g00425 Cme-Chr10:2683489 Cme12g02008 Cme-Chr12:25710988 5.56E-61 wgd
Cme12g02008 Cme-Chr12:25710988 Cme02g01890 Cme-Chr2:25419111 1.72E-10 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g537 Blo04g00768 . Bda06g00547 Bda15g00599 Bpe12g00551 . . Bma12g00998 Cmo13g01176 . Cma10g00186 . Car10g00176 Car11g00147 Sed08g0209 Cpe20g00029 . Bhi02g00330 Tan09g2130 Cmetu02g1507 . Hepe09g0125 . . Cla06g01596 Cam06g1770 Cec06g1822 Cco06g1829 Clacu06g1733 Cmu06g1677 Cre06g2493 . . . Cone19ag0075 Lsi02g00060 Csa01g00533 Chy12g01554 Cme12g02008 Blo13g00013 Blo15g00307 . Bda14g00846 Bpe07g00785 Bpe15g00605 . Bma08g00216 . Cmo10g00203 Cmo11g00159 Cma13g01122 . Car13g00957 . . Cpe18g00799 . . . . . . . Cla04g01209 Cam04g1275 Cec01g1783 Cco01g1830 Clacu04g1303 Cmu04g1279 Cre01g1570 Lsi06g01472 Csa01g00228 Chy02g02504 Cme02g01890
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme06g02231 . 45 265 TCP Transcription Factor Family AT5G23280 61.8 1.3e-63 240.0
Cme10g00786 . 93 315 TCP Transcription Factor Family AT5G23280 59.6 5.3e-60 228.0
Cme11g02537 . 65 328 TCP Transcription Factor Family AT2G45680 53.8 1.6e-65 246.9
Cme10g00425 . 71 165 TCP Transcription Factor Family AT3G47620 89.7 8.2e-41 165.2
Cme12g02008 CCT,ECH 37 137 TCP Transcription Factor Family AT3G47620 82.2 1.2e-39 161.4
Cme10g00701 . 46 165 TCP Transcription Factor Family AT3G47620 65.1 2.7e-36 150.2
Cme10g00701 . 46 147 TCP Transcription Factor Family AT1G69690 78.8 2.8e-37 152.9
Cme06g01771 . 8 241 TCP Transcription Factor Family AT3G27010 58.2 2.8e-58 222.6
Cme11g02340 . 36 270 TCP Transcription Factor Family AT3G27010 52.0 3.5e-53 205.7
Cme10g00786 . 63 313 TCP Transcription Factor Family AT5G08330 55.4 9.9e-64 240.4
Cme06g02231 . 31 264 TCP Transcription Factor Family AT5G08330 59.1 1.3e-60 229.9
Cme02g01824 CCT 49 148 TCP Transcription Factor Family AT5G60970 76.2 2.0e-39 160.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000689 5 3 3 4 4 3 5 3 3 3 3 3 3 3 3 5 3 2 4 3 3 3 3 3 3 3 3 4 3 2 98
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42393 PF03634 TCP 8.20E-36 No_clan Cme TF