Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g02013 ATGTTGGAGGGTCCATCTTATCTCATCTCGAGGGACTTGCCTAGCTCTTGCGAACAAGAAAGCAAATGGGTTTACAATACTTTCCGTGTGATTGAGATGACGAATAAGAAGCATCACTTAGAAGATATGGAACAACCTCCAGCAAAAAAGTTATGCAAGTTGATAGATGGTGCTCACAATGGAGGGGAAGATTTAAATCTTCCAGCAACCTTAGTTGACGATCAGGATAAGCAGCATTGCGGTGGAGACCAGTCGGATTCAGGTTCGTTGATCCAACAACTTGGTCGGGACATGTCAATTAATTGTCTCCTCTACTGCTCAAGATCAGAATATGGCTCAATTGCCTCATTGAATCGGAGCTTCCGATCTCTTATTACAAGTGGTGAACTTTATAAACTACGGAGGCGGATGGGCATCATTGAACATTGGATTTACTTCTCCTGCAGCCTTCTTGAATGGGATGCATATGATCCAAACTCTAACCGTTGGATGCGTCTGCCTATAATGGCATCAAATGAATGTTTCATGTCATCAGATAAGGAGTCCTTGGCTGTTGGGACTGAACTTCTTGTTTTTGGGAAGGAAACGATGTCCCAAGTTATATATAGATACAGTATTTTGAATAACACATGGTCATCTGGGATGAATATGAATACACCTAGATTTCTGTTTGGTTCCGCTAGTCTTGGCGAAGTTGCAATACTAGCTGGTGGTTGTGATCCAAAAGGGAACCTCCTGAACTCAGCCGAGCTTTATAATTCTGAGACAGGAACTTGGGTCACTCTTCCTAGAATGAACAAAGCAAGGAAAATGTGCTCTGCAGTATTTCTTGAGGGAAAGTTCTATGTGATTGGCGGAACTGGGGCAGGTAACACAACTCTTACTTGTGGTGAAGAATATGATTTGAAGACTCGGACGTGGCGTGAGATACCTAACATGTACCCGGGGCGAAATGCTGGAGATGGGGCTGGTGTGCCAGTTGCTGCAGTTGAGGCACCTCCTTTGGTTGCAGTAGTAAATGAAAATTTGTACGCTGCAGATTATGCACATAGGGAGGTAAAAAGATATGACAAGGCAAGAAAATCGTGGGTGGCTGTAGGCCGATTGCCCGAGCGTGTGGTCTCGACAAATGGTTGGGGGTTGGCATTTAGGGCTTGTGGAGATCGACTAGTCGTCATTGGTGGACCGAGGGCTTTAGGTGGACGTATGATTGAGATATACTCTTGGGCCCCAGATCAAGGCCAGCTGCATTGGGATGTGCTTGCCAGCAGGCAGTTAGGAAATTTTGTGTATAACTGTGCAGTCATGGGATGCTGA 1317 45.1 MLEGPSYLISRDLPSSCEQESKWVYNTFRVIEMTNKKHHLEDMEQPPAKKLCKLIDGAHNGGEDLNLPATLVDDQDKQHCGGDQSDSGSLIQQLGRDMSINCLLYCSRSEYGSIASLNRSFRSLITSGELYKLRRRMGIIEHWIYFSCSLLEWDAYDPNSNRWMRLPIMASNECFMSSDKESLAVGTELLVFGKETMSQVIYRYSILNNTWSSGMNMNTPRFLFGSASLGEVAILAGGCDPKGNLLNSAELYNSETGTWVTLPRMNKARKMCSAVFLEGKFYVIGGTGAGNTTLTCGEEYDLKTRTWREIPNMYPGRNAGDGAGVPVAAVEAPPLVAVVNENLYAADYAHREVKRYDKARKSWVAVGRLPERVVSTNGWGLAFRACGDRLVVIGGPRALGGRMIEIYSWAPDQGQLHWDVLASRQLGNFVYNCAVMGC 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25732093 25735886 - MELO3C001967.2.1 Cme12g02013 345230

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g02013 438 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 1 438 - -
Cme12g02013 438 SMART kelc_smart 188 231 IPR006652 GO:0005515
Cme12g02013 438 SMART kelc_smart 280 327 IPR006652 GO:0005515
Cme12g02013 438 SMART kelc_smart 232 279 IPR006652 GO:0005515
Cme12g02013 438 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP11 1 438 - -
Cme12g02013 438 Pfam Kelch motif 268 313 IPR006652 GO:0005515
Cme12g02013 438 Pfam Kelch motif 220 266 IPR006652 GO:0005515
Cme12g02013 438 SUPERFAMILY Kelch motif 150 435 IPR015915 GO:0005515
Cme12g02013 438 Gene3D - 144 425 IPR015915 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g02013 - - - csv:101215424 856.284
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g01794 Cme-Chr11:26104329 Cme12g02013 Cme-Chr12:25732093 4.71E-124 dispersed
Cme12g00296 Cme-Chr12:3725016 Cme12g02013 Cme-Chr12:25732093 4.27E-121 dispersed
Cme12g02013 Cme-Chr12:25732093 Cme02g01224 Cme-Chr2:17637662 4.56E-19 dispersed
Cme01g00259 Cme-Chr1:1903617 Cme12g02013 Cme-Chr12:25732093 1.37E-18 transposed
Cme02g00400 Cme-Chr2:3294369 Cme12g02013 Cme-Chr12:25732093 1.43E-10 transposed
Cme04g02272 Cme-Chr4:29743312 Cme12g02013 Cme-Chr12:25732093 1.10E-14 transposed
Cme03g01420 Cme-Chr3:23608365 Cme12g02013 Cme-Chr12:25732093 3.20E-26 transposed
Cme10g00430 Cme-Chr10:2714082 Cme12g02013 Cme-Chr12:25732093 8.91E-159 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g528 Blo04g00765 . . . . . . . Cmo13g01169 . . . . . . Cpe20g00034 . . . . . . . . . . . . . . . . Cone16ag0157 . Cone19ag0082 Lsi02g00055 Csa01g00528 Chy12g01559 Cme12g02013 . . . Bda14g00843 . Bpe15g00608 Bma03g00821 . . . . Cma13g01118 . Car13g00952 . . . . . . . . . . Cla04g01214 Cam04g1280 Cec01g1789 Cco01g1835 Clacu04g1309 Cmu04g1284 Cre01g1575 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008261 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 1 1 35