Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme12g02022 | ATGACCATTACTCAACAACTCTCTGTTCTGTCTCTCATTTCCTTCATTTTTCTGATCTCTAATGTAGTTTCTTCTTCAGAAGCCCATGGCTTAAGCATGAACGCCATTGATAGATGCTGGAGATCAAACCCATACTGGAGAAGAAACAGACAACAACTCGCCACTTGTTCAGTTGGTTTCGCCGGAAAAATGACCAACAACATGGGAAGAAATCTCATACATTACCAAGTCACTGACCCAAGCGATGACCCTATAAACCCACGTCCAGGTACTCTCAGATACGGCGCCACAATGATCAAACACAAAGTCTGGATCACATTCCAAAAAGACATGCACATTGTGCTTCAGAAGCCTCTTCTAATCAGCAGCTTTACGGCCATCGACGGCCGAGGTGCCACCGTCCACATCACCGGAAACGCCTGTCTGATGGTGCTCAGAGCCACCAACATCATAATCCACGGCCTTATCATCCACCACTGCAGGTCTCAGGCGGCGGGAGAAGTCATGGGCCCCAATTCTAAGGTAATTTCACTTGGACACGTTGACGGAGATGCGATCCGTTTAGTAACGGCCTCGAAAGTTTGGATTGACCACAACACGCTGTACCGGTGCGAGGATGGGTTGCTTGACGTCACCCGTGGGTCCACTGACATCACCATTTCCAACAATTGGTTCCGGGACCAAGACAAGGTTATTCTTCTTGGTCATGATGATGGTTATGTTCGAGATCGGAACATGAAAGTCACTGTCGTCTATAACCATTTTGGACCAAATTGTAACCAAAGAATGCCCAGGATTCGATATGGGTATGCACACGTGGCAAACAATTTATACCAAGGTTGGACGCAATACGCAATTGGAGGGAGCATGAATCCGAGCGTGAAGAGTGAAGCCAACCTTTTCATCGCATCAAAGTCAAAACAGGTCATATGGAGCACTGGGAATGTAGAGGAGGCAAAATGGAAGTTTCACTCAGTGAGAGACGTATTTGAAAACGGAGCATTGTTTACAGAAATTGGAGTGGGGAGGGGAAGAGTAAAGCCAAATTACAACCCCCAACAGCGGTTTCCAGTGGCAGATGCTAAGTGGATCAGAGCATTGACAAGCTCCTCCGGGGCATTGCGCTGCACATCAAATTCAAAATGCTGA | 1149 | 47.17 | MTITQQLSVLSLISFIFLISNVVSSSEAHGLSMNAIDRCWRSNPYWRRNRQQLATCSVGFAGKMTNNMGRNLIHYQVTDPSDDPINPRPGTLRYGATMIKHKVWITFQKDMHIVLQKPLLISSFTAIDGRGATVHITGNACLMVLRATNIIIHGLIIHHCRSQAAGEVMGPNSKVISLGHVDGDAIRLVTASKVWIDHNTLYRCEDGLLDVTRGSTDITISNNWFRDQDKVILLGHDDGYVRDRNMKVTVVYNHFGPNCNQRMPRIRYGYAHVANNLYQGWTQYAIGGSMNPSVKSEANLFIASKSKQVIWSTGNVEEAKWKFHSVRDVFENGALFTEIGVGRGRVKPNYNPQQRFPVADAKWIRALTSSSGALRCTSNSKC | 382 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 25778249 | 25780092 | - | MELO3C001958.2.1 | Cme12g02022 | 345239 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme12g02022 | 382 | PANTHER | PECTATE LYASE 18-RELATED | 13 | 379 | IPR045032 | GO:0030570 | |
| Cme12g02022 | 382 | PRINTS | Pollen allergen Amb family signature | 56 | 73 | IPR018082 | - | |
| Cme12g02022 | 382 | PRINTS | Pollen allergen Amb family signature | 118 | 134 | IPR018082 | - | |
| Cme12g02022 | 382 | PRINTS | Pollen allergen Amb family signature | 182 | 203 | IPR018082 | - | |
| Cme12g02022 | 382 | PRINTS | Pollen allergen Amb family signature | 262 | 281 | IPR018082 | - | |
| Cme12g02022 | 382 | PRINTS | Pollen allergen Amb family signature | 284 | 303 | IPR018082 | - | |
| Cme12g02022 | 382 | PRINTS | Pollen allergen Amb family signature | 353 | 376 | IPR018082 | - | |
| Cme12g02022 | 382 | Pfam | Pectate lyase | 125 | 301 | IPR002022 | - | |
| Cme12g02022 | 382 | PANTHER | PECTATE LYASE | 13 | 379 | - | - | |
| Cme12g02022 | 382 | Gene3D | - | 33 | 375 | IPR012334 | - | |
| Cme12g02022 | 382 | SMART | amb_all | 110 | 307 | IPR002022 | - | |
| Cme12g02022 | 382 | SUPERFAMILY | Pectin lyase-like | 33 | 373 | IPR011050 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme12g02022 | Cme-Chr12:25778249 | Cme08g00423 | Cme-Chr8:2582156 | 1.88E-104 | dispersed | |
| Cme12g02022 | Cme-Chr12:25778249 | Cme12g01514 | Cme-Chr12:22681442 | 2.89E-109 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme12g02022 | K01728 | - | csv:101217103 | 705.286 |