Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g02023 ATGGGGAGGAAGAAGAGAACCGATGCTGGCGGTGAAAGTTCTGAGTCTCAAGATGGTGGTGGTCGTGGCTCCCAAAGATCAGCTGAAAGGAGAGACACCCCACAGCAACATGGTGGTAGTGGGTACCAGGGTGGGAGAGGTTGGGGTTCTCAAGGGGGACGTGGAGGTCAAGGTGGTGGAGGGCGTGGGCGAGGAACGTCTCAACATCAGCACTATGGAGGACCTCCCGATCACCAAGGCAGGGGTAGAGGTGGGCCATATCATGGAGGACGCAATAACTATGGTGGTGGTGGTGGTAATCGCGGTGGCATGGGTGGTGGTGGCATTGGGGGAGGACCTTCTTCTGGTGGACCATCCAGGTCACTAGTTCCCGAGCTGCACCAAGCAACCCCAATGTATCAAGGAGGGATGACTCAGCCAGTCTCATCTGGGGCGAGTTCTTCCTCCCACCCATCTGACACTTCATCAATTGATCAACAATTTCAACAAATTTCCATTCAACAAGAATCCTCTCAAAGTCAAGCAATTCAACCTGCGCCACCATCTAGTAAATCCTTGAGATTCCCACTGAGACCAGGAAAGGGTAGCTCTGGTACAAGGTGTATCGTTAAGGCTAACCATTTCTTCGCTGAGTTACCCGACAAAGATCTTCATCAGTATGATGTTACTATTACCCCAGAAGTTACTTCGCGCGTCTACAACCGAGCTGTAATGGAACAGCTAGTTAAATTATATAGAGTCTCACACCTTGGGGATCGGCTTCCTGCTTATGATGGAAGAAAAAGTTTATATACGGCTGGTCCCCTCCCTTTCATATCCAATGAGTTTAGAATAACTCTTTTTGATGAAGAAGATGGATCTGGTGGACAAAGACGGGAAAGGGAATTTAAAGTTGTAATCAAATTGGCTGCACGTGCTGATCTACACCATCTTGGACTCTTTTTGCAAGGCAGACAGGCCGATGCCCCTCAAGAAGCTCTTCAAGTTCTGGATATTGTATTACGAGAATTACCTACTTCAAGGTATTGTCCAGTGGCCCGATCATTTTACTCTCCAGATCTTGGCAGACGTCAGACACTGGGTGAGGGGCTGGAAAGTTGGCGTGGTTTCTATCAGAGTATCCGCCCTACACAAATGGGACTCTCCCTTAATATTGATATGTCCTCTACTGCTTTCATAGAGCCTTTGCATGTCATTGATTTTGTCACTCAACTTCTCAATCGGGATGTGTCGTCCAGGCCTTTATCTGATGCTGACCGTGTGAAGATAAAGAAGGCTCTTCGAGGTGTCAAGGTTGAAGTGACGCATCGTGGGAATATGCGCAGAAAATACCGCATTTCTGGCCTGACATCACAAGCAACTCGTGAGCTAACTTTCCCAGTTGATGAGAGAGGTACTATGAAGTCGGTGGTTGAGTACTTCTACGAAACATATGGATTTGTTATCCAACATACCCAGTGGCCTTGTCTTCAAGTAGGGAATCAGCAGAGACCTAATTATCTACCGATGGAAGTATGTAAGATTGTTGAAGGTCAGAGGTATTCGAAAAGGCTTAATGAAAGACAAATAACTGCTCTGCTCAAGGTTACATGCCAACGGCCCAAAGATAGAGAGGAAGACATTATGCAGACGGTACGTCATAATGCATACCATAATGATCCATATGCTAAGGAGTTTGGAATCAAGATCAGTGAGAAGCTTGCTTCTGTTGAAGCGCGTATTCTTCCGGCACCATGGCTAAAATATCATGACACCGGCAGAGAAAAAGATTGTTTGCCTCAAGTTGGACAATGGAATATGATGAATAAGAAAATGTTCAATGGTGGTACTGTTAACAACTGGATGTGCATTAATTTCTCTCGCTATGTGCAAGATAGTGTTACTCGTGGCTTTTGTTATGAACTTGCTCAAATGTGTTACATTTCTGGCATGGCTTTCAATCCAGAACCAGTTCTTCCCCCTATTTTTGCTCGTCCAGATCATGTGGAAAAGGCCCTTAAAACTCGGTACCATGATGCAATGAGCATTCTCCAACCCCAGGGCAAGGAGCTCGATTTGCTTATTGTCGTATTACCAGATAACAACGGATCCCTTTATGGTGATTTAAAGCGTATCTGTGAAACTGATCTCGGGCTCGTTTCCCAGTGCTGTTTGACTAAACATGTTTTCAAAATGAGTAAACAGTATTTGGCCAATGTGGCCTTAAAAATAAACGTTAAGGTTGGGGGAAGGAATACGGTACTTGTTGATGCTTTATCTAGGCGCATACCCTTGGTTAGCGATCGACCTACCATTATATTTGGTGCCGATGTAACTCATCCTCACCCAGGAGAAGACTCGAGTCCATCCATTGCTGCTGTTGTTGCTTCTCAAGATTGGCCCGAAGTTACAAAATATGCTGGTTTGGTTAGTGCTCAAGCCCACAGGCAAGAACTTATTCAAGATCTTTTCAAAACATGGCAGGATCCTGTTAGGGGGACAGTAACGGGTGGAATGATCAAGGAACTCCTCATCTCCTTCCGTCGAGCAACTGGACAGAAACCTCAACGCATTATATTTTACAGGGATGGGGTTAGCGAAGGACAGTTCTACCAAGTTTTGTTGCATGAGCTGGATGCCATTAGAAAGGCATGTGCTTCTTTGGAACCAAACTACCAACCTCCAGTGACATTTGTTGTGGTACAGAAGCGACATCACACAAGATTGTTTGCTAATAACCATTCTGATCGCCATGCGGTGGACAAGAGTGGGAACATATTACCTGGCACGGTTGTTGATTCTAAAATTTGTCACCCTACGGAATTCGACTTTTACCTTTGCAGTCATGCCGGAATCCAGGGTACAAGTCGTCCTGCTCATTACCATGTTCTATGGGATGAGAACAAGTTCACTGCTGATGGATTGCAGACTCTAACGAATAATCTTTGTTACACATATGCTAGGTGTACTCGCTCCGTTTCTATTGTGCCCCCAGCGTACTACGCCCATCTTGCTGCTTTCCGAGCTCGTTTCTATATGGAACCTGAAACCTCTGATAGTGGGTCAATTAGCAGTGATGCTGCTGCTGGACGTGGTGGCGTTGGTGGTGCTCGCAGTACACGGGCACCAGGGTTGAATGCTGCTGTTCGACCTTTGCCAGCTCTGAAAGAGAATGTTAAGAGGGTTATGTTCTATTGTTGA 3180 46.01 MGRKKRTDAGGESSESQDGGGRGSQRSAERRDTPQQHGGSGYQGGRGWGSQGGRGGQGGGGRGRGTSQHQHYGGPPDHQGRGRGGPYHGGRNNYGGGGGNRGGMGGGGIGGGPSSGGPSRSLVPELHQATPMYQGGMTQPVSSGASSSSHPSDTSSIDQQFQQISIQQESSQSQAIQPAPPSSKSLRFPLRPGKGSSGTRCIVKANHFFAELPDKDLHQYDVTITPEVTSRVYNRAVMEQLVKLYRVSHLGDRLPAYDGRKSLYTAGPLPFISNEFRITLFDEEDGSGGQRREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTSRYCPVARSFYSPDLGRRQTLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLHVIDFVTQLLNRDVSSRPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTMKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPKDREEDIMQTVRHNAYHNDPYAKEFGIKISEKLASVEARILPAPWLKYHDTGREKDCLPQVGQWNMMNKKMFNGGTVNNWMCINFSRYVQDSVTRGFCYELAQMCYISGMAFNPEPVLPPIFARPDHVEKALKTRYHDAMSILQPQGKELDLLIVVLPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVSAQAHRQELIQDLFKTWQDPVRGTVTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLHELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHSDRHAVDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSISSDAAAGRGGVGGARSTRAPGLNAAVRPLPALKENVKRVMFYC 1059
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25785423 25792944 + MELO3C001957.2.1 Cme12g02023 345240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g02023 1059 Pfam Piwi domain 687 1006 IPR003165 GO:0003676
Cme12g02023 1059 SUPERFAMILY Ribonuclease H-like 681 1007 IPR012337 -
Cme12g02023 1059 SMART Piwi_a_2 686 1007 IPR003165 GO:0003676
Cme12g02023 1059 ProSiteProfiles PAZ domain profile. 396 510 IPR003100 GO:0005515
Cme12g02023 1059 Pfam PAZ domain 400 525 IPR003100 GO:0005515
Cme12g02023 1059 CDD Piwi_ago-like 554 1006 IPR045246 -
Cme12g02023 1059 SMART PAZ_2_a_3 400 532 IPR003100 GO:0005515
Cme12g02023 1059 Pfam Argonaute linker 2 domain 536 582 IPR032472 -
Cme12g02023 1059 PANTHER PROTEIN ARGONAUTE 1A 88 1058 - -
Cme12g02023 1059 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 88 1058 - -
Cme12g02023 1059 SUPERFAMILY PAZ domain 203 546 IPR036085 GO:0005515
Cme12g02023 1059 Pfam Glycine-rich region of argonaut 73 181 IPR024357 -
Cme12g02023 1059 ProSiteProfiles Piwi domain profile. 686 1007 IPR003165 GO:0003676
Cme12g02023 1059 SMART DUF1785_2 343 395 IPR014811 -
Cme12g02023 1059 Pfam N-terminal domain of argonaute 200 334 IPR032474 -
Cme12g02023 1059 CDD PAZ_argonaute_like 395 509 - -
Cme12g02023 1059 Gene3D paz domain 389 514 - -
Cme12g02023 1059 MobiDBLite consensus disorder prediction 132 181 - -
Cme12g02023 1059 MobiDBLite consensus disorder prediction 1 196 - -
Cme12g02023 1059 Pfam Argonaute linker 1 domain 345 394 IPR014811 -
Cme12g02023 1059 Gene3D - 574 749 - -
Cme12g02023 1059 Pfam Mid domain of argonaute 593 667 IPR032473 -
Cme12g02023 1059 Gene3D - 755 1059 IPR036397 GO:0003676
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00567 Cme-Chr6:3593887 Cme12g02023 Cme-Chr12:25785423 0 dispersed
Cme10g00384 Cme-Chr10:2465323 Cme12g02023 Cme-Chr12:25785423 0 dispersed
Cme12g00518 Cme-Chr12:8945445 Cme12g02023 Cme-Chr12:25785423 0 dispersed
Cme12g02023 Cme-Chr12:25785423 Cme12g00888 Cme-Chr12:15704941 3.27E-07 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g02023 K11593 - csv:101212130 1914.43