Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g02033 ATGGCTCAGGCGGCAAGTCGATCCAAATTGCGGTGGGGAGAGCTAGATGACGACGACGGCGATCTGGATTTTCTTCTACCGCCCAAGAAAATTATCGGTCCAGACGAGAACGGCGTGAAGAAAATTATTGAATATCAGTTTAACGAAGATGGTAATAAGGTCAAGATCACAACCACCACGCGTACTCGCAAGCTCGCCAATGCTCGCCTCAGTAAACACGCCGTCGAGCGCCGATCTTGGGCAAAGTTCGGCGACGCTGTGCACGAGGACGTCGGTAGCCGCCTCACTATGGTCTCCACTGAGGAGATCCTCCTGGAACGCCCTCGTGCTCCTGGTAGCAAACCAGAAGAGCCAAAGGTTGCAGGAGACCCTCTAGCTCAACTTGGAAAAGGTGGTGCTGTTCTTATGGTGTGTCGTACTTGTGGCAAAAAGGGTGATCACTGGACCTCAAGATGCCCTTACAAAGACTTGGCACCACAAGGTGAGGGATTGGATAAAGCTACTACACCAGAGGCTGCAGCTGCTGCACCTGGTGGTGCAACTAAGGGAACGTATGTTCCTCCAGGTATGAGAGCAGGAGCAGACAGGACTGGAACTGATATGAGACGCAGGAACGATGAAAACTCTGTTCGTGTCACCAATCTCTCAGAGGACACGAGAGAGCCTGATCTGCTTGAGCTTTTCCGATCTTTCGGTGCTGTTAGCCGAGTTTATGTTGCAGTGGACCAGAAGACTGGTATGAGCAGAGGATTTGGTTTCGTGAACTTTGTGAACCGTGAGGATGCTCAAAGAGCTATCAACAAACTGAATGGATATGGTTATGATAATCTCATCCTTAGAGTTGAGTGGGCTACTCCAAGGGCTACTTAA 870 50.46 MAQAASRSKLRWGELDDDDGDLDFLLPPKKIIGPDENGVKKIIEYQFNEDGNKVKITTTTRTRKLANARLSKHAVERRSWAKFGDAVHEDVGSRLTMVSTEEILLERPRAPGSKPEEPKVAGDPLAQLGKGGAVLMVCRTCGKKGDHWTSRCPYKDLAPQGEGLDKATTPEAAAAAPGGATKGTYVPPGMRAGADRTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRSFGAVSRVYVAVDQKTGMSRGFGFVNFVNREDAQRAINKLNGYGYDNLILRVEWATPRAT 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25834091 25836236 + MELO3C001947.2.1 Cme12g02033 345250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g02033 289 PIRSF Transl_init_eIF-3_RNA-bind 1 289 IPR017334 GO:0003743|GO:0005737|GO:0005852
Cme12g02033 289 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 9 288 IPR017334 GO:0003743|GO:0005737|GO:0005852
Cme12g02033 289 SUPERFAMILY RNA-binding domain, RBD 206 287 IPR035979 GO:0003676
Cme12g02033 289 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 276 IPR000504 GO:0003723
Cme12g02033 289 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 286 IPR000504 GO:0003723
Cme12g02033 289 CDD RRM_eIF3G_like 209 284 IPR034240 -
Cme12g02033 289 Pfam Eukaryotic translation initiation factor 3 subunit G 32 157 IPR024675 -
Cme12g02033 289 SMART rrm1_1 209 282 IPR000504 GO:0003723
Cme12g02033 289 Gene3D - 180 289 IPR012677 -
Cme12g02033 289 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 7 288 - -
Cme12g02033 289 MobiDBLite consensus disorder prediction 163 207 - -
Cme12g02033 289 CDD eIF3G 37 156 IPR024675 -
Cme12g02033 289 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 7 288 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01657 Cme-Chr6:17927272 Cme12g02033 Cme-Chr12:25834091 2.55E-173 dispersed
Cme12g02033 Cme-Chr12:25834091 Cme05g02084 Cme-Chr5:29047034 4.49E-11 dispersed
Cme12g02033 Cme-Chr12:25834091 Cme01g02790 Cme-Chr1:34937065 2.59E-12 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g02033 K03248 - csv:101212619 553.132