Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g02034 ATGGAGGCACCGAGACCGGGCTGGGCAGTGAGGATGATAATCGTTATGGTTATTACGGCAATTTTCTTTCGCTGCGTCAATGCGACCAACCATTCCGTTGGTGGATCTTCCGGTTGGGATCTCAATTCGAACATCCTGGCTTGGTCTGCGGCCACCACGTTTCAAGTCGGAGACTATCTCGTGTTCAAGTACTTGCCAGTTCACGACGTGCTGGAAGTGAACCGAACAGACTTCTTCAATTGCCGCACCGTGAATCCAATCAGAACCCACAGTGATGGGGAGACGGTGATCCCCCTGAACCAACCTGGCAGTCGCTACTTCATCTGTGGCCGCCCTCAACACTGCCTCATGGGACTTAAGCTCCGAGTCCAAGTCCTCCAACGCATGAGCGACCCCAACAACAATTCAACTCACGGCAGCGCTAACCACGAGGAGCGACTTAGCCCACGCCACCCTCCTCGTTCTCCTCCCTCCTCACCCCCTTCTCCAACTATTGAACTCCCACCAAACCCTGACATTCCGGGGGCGCCACTGCCTTGCATTTGTTCCGGGGTGACCGAGATGATGATGAAAACTTGCCCTATGAACTGGCGTTTCCTGTTGCTCTTCATTATCCTTGCAATCCCTCCTTACTTTCATTCCTTGATTCCATAG 654 53.36 MEAPRPGWAVRMIIVMVITAIFFRCVNATNHSVGGSSGWDLNSNILAWSAATTFQVGDYLVFKYLPVHDVLEVNRTDFFNCRTVNPIRTHSDGETVIPLNQPGSRYFICGRPQHCLMGLKLRVQVLQRMSDPNNNSTHGSANHEERLSPRHPPRSPPSSPPSPTIELPPNPDIPGAPLPCICSGVTEMMMKTCPMNWRFLLLFIILAIPPYFHSLIP 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25836771 25838732 + MELO3C001946.2.1 Cme12g02034 345251

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g02034 217 PANTHER BLUE COPPER PROTEIN 30 144 IPR039391 GO:0009055
Cme12g02034 217 Pfam Plastocyanin-like domain 40 118 IPR003245 GO:0009055
Cme12g02034 217 Gene3D - 27 131 IPR008972 -
Cme12g02034 217 PANTHER COPPER ION BINDING / ELECTRON CARRIER PROTEIN-RELATED 30 144 - -
Cme12g02034 217 ProSitePatterns Type-1 copper (blue) proteins signature. 103 117 IPR028871 -
Cme12g02034 217 SUPERFAMILY Cupredoxins 28 126 IPR008972 -
Cme12g02034 217 MobiDBLite consensus disorder prediction 152 171 - -
Cme12g02034 217 MobiDBLite consensus disorder prediction 130 171 - -
Cme12g02034 217 ProSiteProfiles Phytocyanin domain profile. 29 127 IPR003245 GO:0009055
Cme12g02034 217 CDD Phytocyanin 29 125 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g02034 - - - csv:101216391 407.142
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g00759 Cme-Chr11:9434380 Cme12g02034 Cme-Chr12:25836771 6.88E-34 dispersed
Cme12g00849 Cme-Chr12:15260778 Cme12g02034 Cme-Chr12:25836771 1.98E-23 dispersed
Cme12g02034 Cme-Chr12:25836771 Cme03g01843 Cme-Chr3:26762201 8.32E-22 dispersed
Cme12g02034 Cme-Chr12:25836771 Cme04g00259 Cme-Chr4:2051335 4.07E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g973 . . . . Bpe12g00630 . . Bma12g01259 . . . . . . . Cpe20g00050 . . . . . . . . . . . . . . . . . . . Lsi02g00032 Csa01g00508 Chy12g01576 Cme12g02034 . . . . Bpe07g01066 . . . . . . Cma13g01102 . Car13g00936 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011830 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 30