Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g02040 ATGGCTGCTTTTGAAAAAGACGATATACCAATGCTATCAAACACTGATCCACCAATATTTGACGAACAAATGGATTCTTATTTTCCTTCATATGCATCCTTGGGCCGGAGTTCATCACTATCAATTCCAGCAAATTCTTCTGGGATGTATAGTAGCGAAGCAAATCTTGTTGGTCATACTGGTCCCCTACGAATCGAAAGAAGTTCATTCGCGGTGAGTGGTTCAAAAAATACTGACAGTAAGCCCAAAAAACTTTCGCAGTCAAAGCCAGGAGTGACTGAAAGCAAGACAGCAGAGCCGCTGGCAGAAAAATTTCCTTCGTTCAAGATTGTAGATGATCCTGATTGGTCCATTCATAACTATGCCGGTAGGAACGAACACTTAATAAAGTCTGGCCAGCTGGGATTGTGTAATGATCCTTTCTGTATAACTTGCCCAACATATAATTCCAAAGTATCACAACAGAAAAGCTCAAGAATATCAGGCATATTTGACGCCAAGTTTCATAGTGATCTCTATGGAGGAGGAAAAGGATGGGCGGGGAAGTTTCAGTCCTTCTGGTGCTTCTTGCTTTCATATATTCCTGGTGTTATGAATCCTCATGCAAAAGTTGTTCAGCAATGGAACAAGTTTTTTGTCATTTCTTGCTTGTTGGCAATCTTTTTGGACCCGTTGTTTTTCTTCTTGCTGTCTGTCCAAGAGAAGAATAAGTGCATCGTTATTGACTGGCCTTTGACCACAACCTTGGTGGTCTTCCGGAGCATGACTGATTTTATCTATTTCCTACACATGCTTCTTCAGTTTAGGTTGGCCTATGTAGCACCAGAATCCAGAGTTGTTGGTGCTGGCGAATTGGTTGACCATCCGAAGAAAATTGCCATGAATTACCTTAAAGGAAATTTTTTTATAGATTTGCTTGTTGTTTTGCCGCTGCCTCAGATCATAATTTTTTTAGTCCTGCCAAAGTCTTTGGGGTCATCTGGAGCAAACTACGCCAAAAATCTATTACGCACTGCAGTTACTGTTCAATATATTCCCAGACTGTATAGGTTTCTACCTCTTCTCGCTGGCCAGTCTCCAAGTGGCTTTGTATTTGAGACAGCATGGGCAAATTTTGTCATCAATCTTTTGACCTTTATGTTGGCTGGTCATATTGTTGGGTCTTTCTGGTATCTTCTGGGGCTTCAGAGGGTGACTCGATGTTTTCGAGATGCCTGCAATAAAACTGGAAATAGAAGCTGCTTGGAATATATAGATTGTGGGCATGGGGATGAATCTAGGAGTCAGTTTCTGGATCCACATCGGGATTCATGGAAACATAATGAGAATGCTACGGCATGTTTCAGCAATGAAGGTTTCGGTTATGGAATCTACCTTCAGGCTGTAAACCTTACCACAGAAAAGAGTATATTGACGAGATATACTTACTCATTATTTTGGGGATTCCAGCAAATCAGTACTCTGGCTGGGAACCAAGTTCCAAGCTATTATGTCTATGAAGTCCTTTTCACTATGGGTATTATTGGGCTTGGTCTATTGCTGTTTGCTCTTCTCATTGGGAATATGCAGAACTTTCTCCAGGCTCTTGGAAGAAGGAGGTTAGAAATGTCACTACGACGTCGTGATGTTGAGCAATGGATGGAGCATCGTCGCTTACCAGAGAATTTAAGAAGACAAGTACGACAGGCTGAAAGATACAACTGGGCTTCTACAAGAGGAGTAAATGAAGAGAGAATTTTTGAAAATTTGCCTGAGGACCTACAAAAAAACATAAGACGGCATCTTTTTAAATTTGTCAACAAGGTTCGCATTTTTGCACTGATGGACTATGAACCTATTTTAGACGCAATACGTGAGAGACTGCGACAAAAGACATACATAGAAGGAAGTGAAGTTTTTTCTGCTGGAGATACCATTGAGAAGATGGTTTTCATCGTACGGGGGAAAATGGAGAGCCGTGTAGATGGAAACGGGATTGTGGTTCCCTTATCTGAAGGAGATGTCTGCGGTGAGGAACTTCTAACATGGTGTCTTGAGCATTCCTCCATAAACAAAGATATGAAGCGGCAGCAAGTTCCAGCGCCTAGATTGGTAAGCAACCGGACAGTAAGATGCTTAAGTAATGTTGAAGCATTTTCTCTCCGGGCTGCAGACCTTGAAGAAGTGACTAGTATGTTTTCTAGATTCTTGCGAAACCCACGTGTTCAAGGAGCCATAAGGTATGAATCACCGTACTGGAGGTACCTAGCTGCAATGCGTATTCAAGTAGCTTGGAGATACAGGAAAAGGCGTCTATCTCGAGTTCAAACCTCTCAATCTAACTAA 2325 41.81 MAAFEKDDIPMLSNTDPPIFDEQMDSYFPSYASLGRSSSLSIPANSSGMYSSEANLVGHTGPLRIERSSFAVSGSKNTDSKPKKLSQSKPGVTESKTAEPLAEKFPSFKIVDDPDWSIHNYAGRNEHLIKSGQLGLCNDPFCITCPTYNSKVSQQKSSRISGIFDAKFHSDLYGGGKGWAGKFQSFWCFLLSYIPGVMNPHAKVVQQWNKFFVISCLLAIFLDPLFFFLLSVQEKNKCIVIDWPLTTTLVVFRSMTDFIYFLHMLLQFRLAYVAPESRVVGAGELVDHPKKIAMNYLKGNFFIDLLVVLPLPQIIIFLVLPKSLGSSGANYAKNLLRTAVTVQYIPRLYRFLPLLAGQSPSGFVFETAWANFVINLLTFMLAGHIVGSFWYLLGLQRVTRCFRDACNKTGNRSCLEYIDCGHGDESRSQFLDPHRDSWKHNENATACFSNEGFGYGIYLQAVNLTTEKSILTRYTYSLFWGFQQISTLAGNQVPSYYVYEVLFTMGIIGLGLLLFALLIGNMQNFLQALGRRRLEMSLRRRDVEQWMEHRRLPENLRRQVRQAERYNWASTRGVNEERIFENLPEDLQKNIRRHLFKFVNKVRIFALMDYEPILDAIRERLRQKTYIEGSEVFSAGDTIEKMVFIVRGKMESRVDGNGIVVPLSEGDVCGEELLTWCLEHSSINKDMKRQQVPAPRLVSNRTVRCLSNVEAFSLRAADLEEVTSMFSRFLRNPRVQGAIRYESPYWRYLAAMRIQVAWRYRKRRLSRVQTSQSN 774
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25864194 25891420 + MELO3C001941.2.1 Cme12g02040 345257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g02040 774 MobiDBLite consensus disorder prediction 71 94 - -
Cme12g02040 774 Gene3D Helix hairpin bin 527 596 - -
Cme12g02040 774 Gene3D - 211 526 - -
Cme12g02040 774 CDD CAP_ED 604 722 IPR000595 -
Cme12g02040 774 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 20, CHLOROPLASTIC-RELATED 6 770 - -
Cme12g02040 774 ProSiteProfiles cAMP/cGMP binding motif profile. 617 674 IPR000595 -
Cme12g02040 774 Gene3D Jelly Rolls 602 728 IPR014710 -
Cme12g02040 774 Pfam Ion transport protein 208 532 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cme12g02040 774 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 6 770 - -
Cme12g02040 774 SUPERFAMILY Voltage-gated potassium channels 203 527 - -
Cme12g02040 774 SUPERFAMILY cAMP-binding domain-like 532 730 IPR018490 -
Cme12g02040 774 MobiDBLite consensus disorder prediction 71 98 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme12g02040 Cme-Chr12:25864194 Cme04g00327 Cme-Chr4:2616233 4.43E-145 dispersed
Cme12g02040 Cme-Chr12:25864194 Cme09g01973 Cme-Chr9:23623350 7.50E-146 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g02040 K05391 - csv:101215903 1470.29