Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g02041 ATGGACTTTGGCGGTGGCTCTGGTTGGGACAACGATTCCTCCTCCGACCCTCAACGCAGAAAAAAACGCTACCATCGTCACAATGCCAACCAGATTCAGAGGCTCGAAGCTATGTTCAAAGAATGCCCACACCCAGATGAGAAGCAGAGATTACAGTTAAGTAGAGAACTGGGATTGGCTCCTCGACAAATCAAATTTTGGTTCCAGAATCGGAGGACCCAGATGAAGGCTCAACATGAAAGGGCAGATAATAGTGCACTTCGAGCAGAGAACGACAAGATTCGATGCGAGAACATAGCCATCAGAGAGGCACTCAAAAATGTTATTTGTCCTTCCTGCGGTGGCCCTCCCCTTCAGGACCCCTACTTCGACGAGCATAAACTTCGAATCGAAAACGCCCATTTGAAAGAAGAGCTTGATAGAGTATCTAGCATCGCAGCCAAGTATATCGGGAGGCCAATCTCTCAACTTCCACCCATTCAACCTTCTCATTTTTCCTCATTAGAACTGTCCATGGGTAGTTTTCCCTCCCAAGAAATGGGATGTCCTTCTCTTGATCTTGATTTACTTTCTGCAAGTTCTACAAGTGTTCCTAATTTACCATACCATCACCCAATTCACCTATCCTCCGTGGATAAGTCCCTCATGACTGAAATTGCCACAAATGCCATGGCAGAGTTGCTTAGGCTTTCCCAAACTAATGAGCCTTTCTGGATGAAATCGCCAACTGATGGTCGTGACCTTCTCGACCTTGAAACCTACGAACATGCTTTTCCAAGACCCAACACTCCCTTGAAGAATCTACATTTTCGCACTGAAGCATCGAGAGACTCAGGCGTCGTGATCATAAGTAGTGCAGCATTGGTTGACATTTTTATGGACTCGAACAAATGGACAGAGTTATTTCCCACAATTGTCTCAATGGCAAGAACAATTGAAGTTGTATCGTCCGGGATGTTGGGAAGTCAGAATGGCTCCTTGCAACTGATGTACCAAGAATTGCAGCTACTCTCCCCATTGGTTCCAACTCGTCACTTTTACGTCATCCGGTATTGTCAACAAATTGAGCAGGGTGTGTGGGCTGTGGTTGATGTTTCCTACAATATTCCCAGGGAAAACCAAATAGTTTCTCATCCTCAATGTCACCGCTTTCCCTCTGGTTGCTTGATCCAGGACATGCCTAATGGTTACTCTAAGGTTACTTGGATTGAGCATGTAGAAGTGGAAGATAGAGGCTCGACTCATTGGCTTTTTAGAGATCTTATTCATAGTGGATTAGCCTTTGGTGCTGAACGGTGGCTTGCAACTCTTCAGCGGATGTCTGAAAGGTTTGCCTGTTTAATGGTGACTGGTAGTTCCAATCAGGATCTTGGCGGAGATTGTTATATTCTCCCAGTAATTCCATCACTAGAAGGAAAAAGAAGTATGATGAAACTAGCACAACGAATGGTAAACAATTTTTGTGCTAGTATCAGCACATCTCACGGACACCGTTGGACCACCCTTTCTGGGATGAATGAGGTTGGTGTTCGTGTCACGGTGCATAAAAGCACAGATTCTGGCCAACCTAATGGTGTGGTTCTTAGTGCAGCTACAACCATTTGGCTCCCAGTTTCCCCTCAAACCATCTTTAACTTTTTTAAGAACGACAGAACCAGATCCCAGTGGGATGTTCTCTCGGATGGCAATCCAGTTCAAGAGGTTGCTCATATATCCAACGGATCCCATCCAGGGAATTGCATATCTGTTCTCAGAGCTTTCAATACAAGTCAGAACAACATGTTGATTCTCCAAGAGAGTTGCATAGACTCATCAGGGTCACTTGTTGTGTACTGCCCAGTGGATCTACCAGCCATGAATGTTGCAATGAGTGGGGAGGATCCATCAAGTATTCCATTACTGCCTTCGGGATTCACAATTTTACCAGATGGTCGACGGGACCAAGGAGAGGGTGCATCGAGCAGCTCAGATGTTCACAACAGGTCAGGGGGTTCGCTGGTGACGGTTGCATTTCAAATACTAGTAAGCAGCTTGCCATCTGGGAAGCTGAACTTGGAGTCGGTGACAACGTTTTGGGAGGAACTTTTCATGTTCTATATCACAGCTTCAGAGTCTACTGAGAGAGTCAAGAACGCACCATATGGCCTTCTCCATAAATAG 2160 45.6 MDFGGGSGWDNDSSSDPQRRKKRYHRHNANQIQRLEAMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNSALRAENDKIRCENIAIREALKNVICPSCGGPPLQDPYFDEHKLRIENAHLKEELDRVSSIAAKYIGRPISQLPPIQPSHFSSLELSMGSFPSQEMGCPSLDLDLLSASSTSVPNLPYHHPIHLSSVDKSLMTEIATNAMAELLRLSQTNEPFWMKSPTDGRDLLDLETYEHAFPRPNTPLKNLHFRTEASRDSGVVIISSAALVDIFMDSNKWTELFPTIVSMARTIEVVSSGMLGSQNGSLQLMYQELQLLSPLVPTRHFYVIRYCQQIEQGVWAVVDVSYNIPRENQIVSHPQCHRFPSGCLIQDMPNGYSKVTWIEHVEVEDRGSTHWLFRDLIHSGLAFGAERWLATLQRMSERFACLMVTGSSNQDLGGDCYILPVIPSLEGKRSMMKLAQRMVNNFCASISTSHGHRWTTLSGMNEVGVRVTVHKSTDSGQPNGVVLSAATTIWLPVSPQTIFNFFKNDRTRSQWDVLSDGNPVQEVAHISNGSHPGNCISVLRAFNTSQNNMLILQESCIDSSGSLVVYCPVDLPAMNVAMSGEDPSSIPLLPSGFTILPDGRRDQGEGASSSSDVHNRSGGSLVTVAFQILVSSLPSGKLNLESVTTFWEELFMFYITASESTERVKNAPYGLLHK 719
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25897226 25901692 + MELO3C001940.2.1 Cme12g02041 345258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g02041 719 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8 5 691 - -
Cme12g02041 719 CDD homeodomain 20 79 IPR001356 GO:0003677
Cme12g02041 719 SUPERFAMILY Bet v1-like 471 691 - -
Cme12g02041 719 Gene3D - 217 443 IPR023393 -
Cme12g02041 719 Gene3D - 9 94 - -
Cme12g02041 719 Pfam START domain 219 442 IPR002913 GO:0008289
Cme12g02041 719 CDD START_ArGLABRA2_like 213 442 - -
Cme12g02041 719 SUPERFAMILY Bet v1-like 212 444 - -
Cme12g02041 719 SMART START_1 218 443 IPR002913 GO:0008289
Cme12g02041 719 ProSiteProfiles START domain profile. 209 446 IPR002913 GO:0008289
Cme12g02041 719 MobiDBLite consensus disorder prediction 1 26 - -
Cme12g02041 719 Pfam Homeodomain 21 76 IPR001356 GO:0003677
Cme12g02041 719 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 5 691 IPR042160 -
Cme12g02041 719 ProSiteProfiles 'Homeobox' domain profile. 18 78 IPR001356 GO:0003677
Cme12g02041 719 SMART HOX_1 19 82 IPR001356 GO:0003677
Cme12g02041 719 SUPERFAMILY Homeodomain-like 7 78 IPR009057 -
Cme12g02041 719 ProSitePatterns 'Homeobox' domain signature. 53 76 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00141 Cme-Chr4:1059325 Cme12g02041 Cme-Chr12:25897226 0 dispersed
Cme06g01438 Cme-Chr6:13380875 Cme12g02041 Cme-Chr12:25897226 0 dispersed
Cme12g01470 Cme-Chr12:22385995 Cme12g02041 Cme-Chr12:25897226 0 dispersed
Cme12g02041 Cme-Chr12:25897226 Cme11g02549 Cme-Chr11:31886646 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42398 PF01852 START 4.40E-47 CL0209 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g02041 K09338 - csv:101215660 1346.64