Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g02043 ATGGTTTTGACGACAGTTGCAGACTCTGGAGATTCTGTGAACTGCACTTTTGGTTCCAGATATCTCCGCTCTCCTCCTCCCAAGTTCAAACTGGGAGAGCAATCTATTCCAAAGGATGCAGCATATCAGATCATACACGATGAATTGATGCTTGATGGAACTCCCAGACTGAACTTGGCTTCTTTTGTTACTACTTGGATGGAACCAGAGTGTGACAATCTCATCATGGCTTCTCTCAACAAGAACTATGTTGACATGGATGAGTACCCTGTCACTACTGAGCTACAGAATCGCTGTGTCAATATGATTGCTCGCCTCTTTCATGCTCCCATCGGAGATCAAGAAGCTGCAGTTGGTGTCGGAACTGTGGGATCATCAGAGGCTATAATGCTGGCGGGTCTTGCTTTTAAAAGGAAATGGCAACAAAGAAGAAAGTCTCAAGGCAAACCCTATGATAAACCTAATATAGTCACTGGTGCTAATGTTCAGGTGTGCTGGGAGAAGTTTGCAAGGTACTTTGAGGTTGAGCTAAAGGAGGTGAAGCTTTCTGAAGGGTTTTATGTGATGGATCCAGTGAAGGCTGTTGAACTTGTTGATGAGAATACTATTTGTGTTGCAGCAATTTTGGGATCCACTCTGACTGGAGAGTTTGAGGATGTAAAACTCCTTAATGAACTTCTTTCTAAGAAGAATAAGGAAACTGGTTGGGATACCCCAATTCATGTTGATGCAGCTAGTGGAGGCTTTATTGCTCCATTCCTTTATCCTGATCTCGAGTGGGATTTTAGATTGCCTCTAGTGAAAAGTATCAATGTCAGTGGTCATAAGTATGGGCTTGTGTACCCTGGTGTAGGATGGGTTGTCTGGAGGAGTAATCAAGATTTGCCTGAGGAGCTTGTTTTCCATATTAACTATCTTGGTTCTGATCAACCCACCTTCACTCTTAATTTCTCAAAAGGTGGTTCTAGCCAGATCATTGCTCAATATTATCAGTTTATACGGCTTGGATTTGAGGGGTACAAAAACGTGATGGAAAACTGCAGAGAGAATGCAAGAGTGCTGAGAGAGGGAATAGAGAAGATGGGAAGGTTTGATGTTGTTTCCAAGGATGTTGGAGTGCCCCTGGTAGCCTTCACACTCAAAGACAGCAGTAAGCACACTGTGTTCGAGATATCAGAGAACCTGAGGAGGTTTGGATGGATTGTGCCAGCTTACACGATGCCACCAGATGCTCAGCATATCGCAGTGCTGCGAGTGGTGATTAGAGAGGACTTCAGCCGCAGTTTGGCGGAGAGACTGATCTCGGACATTGACAAAGTCTTGAAGGAAGTCGAGGCGCTGCCGATACGGGTGTCTTTGGCAGAAGTGAAAGCTGGAGTTGAAGATAGTGGGAGAGTTAGAAAGCATGTGAAGAAGAGTGAACGGGAGATTGAGGAGGAAGTAACTACATATTGGAGACGGCTTGTGGATGGGAAGAGAACTGGCGCTTGCTAG 1494 44.91 MVLTTVADSGDSVNCTFGSRYLRSPPPKFKLGEQSIPKDAAYQIIHDELMLDGTPRLNLASFVTTWMEPECDNLIMASLNKNYVDMDEYPVTTELQNRCVNMIARLFHAPIGDQEAAVGVGTVGSSEAIMLAGLAFKRKWQQRRKSQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGFYVMDPVKAVELVDENTICVAAILGSTLTGEFEDVKLLNELLSKKNKETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYPGVGWVVWRSNQDLPEELVFHINYLGSDQPTFTLNFSKGGSSQIIAQYYQFIRLGFEGYKNVMENCRENARVLREGIEKMGRFDVVSKDVGVPLVAFTLKDSSKHTVFEISENLRRFGWIVPAYTMPPDAQHIAVLRVVIREDFSRSLAERLISDIDKVLKEVEALPIRVSLAEVKAGVEDSGRVRKHVKKSEREIEEEVTTYWRRLVDGKRTGAC 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25911934 25914439 + MELO3C001938.2.1 Cme12g02043 345260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g02043 497 Pfam Pyridoxal-dependent decarboxylase conserved domain 36 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Cme12g02043 497 PANTHER GLUTAMATE DECARBOXYLASE 1 497 IPR010107 GO:0004351|GO:0006536|GO:0030170
Cme12g02043 497 Gene3D - 1 64 - -
Cme12g02043 497 PANTHER GLUTAMATE DECARBOXYLASE 1 497 - -
Cme12g02043 497 SUPERFAMILY PLP-dependent transferases 14 445 IPR015424 -
Cme12g02043 497 Gene3D - 65 360 IPR015421 GO:0003824
Cme12g02043 497 Gene3D - 361 448 - -
Cme12g02043 497 CDD DOPA_deC_like 58 439 - -
Cme12g02043 497 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 16 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g01266 Cme-Chr9:17519935 Cme12g02043 Cme-Chr12:25911934 3.08E-15 dispersed
Cme09g01267 Cme-Chr9:17534463 Cme12g02043 Cme-Chr12:25911934 0 dispersed
Cme11g02330 Cme-Chr11:30373907 Cme12g02043 Cme-Chr12:25911934 3.10E-19 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g02043 K01580 - csv:101210903 974.541