Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g02049 ATGATAGGCAATACGGCAACCTCGGCCTCCCCACTTCTTCCTAATTCTTCCGAACCATACTCTTGCTTAGAAAATGGAAACAACAACATCAACAACAAGAGGAAAAGAAGGCCTGCAGGGACCCCAGATCCGGATGCAGAGGTGGTGTCTCTGTCCCCAAAAACACTACTAGAATCGGACCGGTATGTGTGCGAGATTTGCAACCAAGGGTTCCAGAGGGATCAGAACCTGCAGATGCATAGGCGGCGGCATAAGGTTCCTTGGAAGCTGCTGAAGAGGGAGAGTCCTGTTGTGCGGAAGAGGGTTTTCGTTTGTCCGGAACCCACCTGCCTACATCACGATCCTTGCCATGCCCTCGGTGACCTCGTTGGAATCAAGAAGCACTTCCGAAGGAAACACAGCAACCACAAACAGTGGGTTTGCGAAAAATGCTCCAAGGGCTACGCGGTTCAGTCCGATTATAAGGCTCATCTCAAAACCTGCGGCACTAGAGGCCACTCTTGCGATTGCGGCCGCGTTTTCTCTAGGGTGGAGAGCTTTATAGAGCACCAAGATGCTTGCAATATGGGGCATCTCCGGCAAGAACCACAAGTCCAGCCCGCATGTCTGTCCAGAACGGCATCGAGTCCAAGCCCCTCCAGCGACACTAACTTCAGCAGCACTCCCGCTCCCAGCAATAATTGGCCTGCTCTAGTAACGGCACCACCCACATTGAAGCCCGTGGATGCCATCTTCTTAACCCCCACGGGGGACTCCAACAACAACAACAATAACGATCACAATTTAGACCTCAAACTGTCAACTGCATCAAATGGTGTGAAAGGGCGGAACAATAATAATAGTAATAAGGGTTCTTCAACGAAACTTGAGCTGTCGATGGGGTCATTTGATTTTGAGGACGAGAAGAAAAAGATGTTGAAATTGGATGATGGTGGGGCTGGGGATGTTAGAGAAGAAGCACGGGAGGAGCTAAGGGTGGCGATGGCAGAGAAGGCATACGCGGAGGAAGCAAGGAAGCAGGCTAAGAGGCAAATAGAAATGGCAGAGGAAGAATTCGGGAATGCAAAGAGGATGAGGCAACAGGCACAGGCTGAATTAGATAAGGCCACGGCCCTTAAACAAGCAGCAATCAAACAGATAAACTCAACCATTCTTGAGATCACTTGTCAAGCTTGCCAGAAGCAGTTTCAAGCCAAAGCTAAAACTAAAACTAAAACTACTACCACTACCACTACCACGACCACGAGTGCAGCCACTGATCATGACAATTATTCCTCCGTAGCATTCAGTTATGTCTCCTCCGTCATTACAACCGAAGGTGAAGTAGAGAAAGATCAATCAACTATTATACCTAAACCGCCCAACAATTAA 1371 48.94 MIGNTATSASPLLPNSSEPYSCLENGNNNINNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRESPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGHLRQEPQVQPACLSRTASSPSPSSDTNFSSTPAPSNNWPALVTAPPTLKPVDAIFLTPTGDSNNNNNNDHNLDLKLSTASNGVKGRNNNNSNKGSSTKLELSMGSFDFEDEKKKMLKLDDGGAGDVREEAREELRVAMAEKAYAEEARKQAKRQIEMAEEEFGNAKRMRQQAQAELDKATALKQAAIKQINSTILEITCQACQKQFQAKAKTKTKTTTTTTTTTTSAATDHDNYSSVAFSYVSSVITTEGEVEKDQSTIIPKPPNN 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25956162 25958735 + MELO3C001929.2.1 Cme12g02049 345266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g02049 456 MobiDBLite consensus disorder prediction 1 35 - -
Cme12g02049 456 PANTHER OS03G0310200 PROTEIN 14 443 IPR039288 GO:0009630
Cme12g02049 456 MobiDBLite consensus disorder prediction 398 419 - -
Cme12g02049 456 MobiDBLite consensus disorder prediction 198 288 - -
Cme12g02049 456 MobiDBLite consensus disorder prediction 247 288 - -
Cme12g02049 456 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 14 443 - -
Cme12g02049 456 Pfam Zinc finger, C2H2 type 62 84 IPR013087 -
Cme12g02049 456 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Cme12g02049 456 SUPERFAMILY beta-beta-alpha zinc fingers 61 159 IPR036236 -
Cme12g02049 456 Gene3D Classic Zinc Finger 124 201 - -
Cme12g02049 456 Coils Coil 317 379 - -
Cme12g02049 456 MobiDBLite consensus disorder prediction 199 232 - -
Cme12g02049 456 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
Cme12g02049 456 MobiDBLite consensus disorder prediction 1 49 - -
Cme12g02049 456 SMART c2h2final6 62 84 IPR013087 -
Cme12g02049 456 SMART c2h2final6 139 166 IPR013087 -
Cme12g02049 456 SMART c2h2final6 103 133 IPR013087 -
Cme12g02049 456 Gene3D Classic Zinc Finger 40 102 - -
Cme12g02049 456 ProSiteProfiles Zinc finger C2H2 type domain profile. 159 196 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g01288 Cme-Chr9:17800861 Cme12g02049 Cme-Chr12:25956162 1.08E-143 dispersed
Cme12g01807 Cme-Chr12:24542528 Cme12g02049 Cme-Chr12:25956162 4.18E-163 dispersed
Cme12g02049 Cme-Chr12:25956162 Cme08g00831 Cme-Chr8:5504754 1.45E-72 dispersed
Cme12g02049 Cme-Chr12:25956162 Cme03g01971 Cme-Chr3:27590275 6.04E-75 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42400 PF00096 zf-C2H2 0.0043 CL0361 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g02049 K25871 - csv:101209426 749.584