Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g02053 ATGGCTTCAGATACCAATGAGGAGAATGCTTGGCAAGAGGCTCTAAGGAGGATGCTGCCTGCTGGTGCACCGTTACCAGACGAAGAACACCTCGATTACTCAATCGCAGTTGAGTATCAAGGCCCTCCTGTGGCTCACGAGCTACCGAAGATCGATCCACTGGATTTGGAGTCACTTTCTATTCTCTCTCCTTCCGTTGTTCCGATCTCCGACATCTCTTCTATTCCGATTGTTTATCCTATTGCTCCCAGGGTTTCCAGGTTCAATCGGTTAAGCAATGGAGCGGTCCCCCGTAGTCCAGTGAAGAGTCAGAGATCGTCGTCAGTTCCTAGAGTTCAGCTGGAATCCCATAATGGTGAACGCTCAAAGTTTGGAAATGGTGTAGACGAGGCGTTCAGTTCAGAATTGTCTGCTCAGCACTTAAATTCAGAGTCGGAACCTGCTATTGCTGAAGGTAAGCGTGCAAACACTGTAACTTTTGTTACACCAAGAGATTCGGAAGACGACGAGGAAGACGTATTTTCCTCTCCGAGGTCGTGTACGACCGATGTGATGACATCCCCGGCTTTATCTCATTCCCGAGAAAAACGAGCGAAAAAGAAAGGAATTTGTAGTAGATGTGGGAGAGGGAATCGGTTGAAAGAGAGGGAAGCTTGTTTGGTCTGTGATGCCCAGTACTGCAGTAATTGTTTACTTAAGGCAATGGGATCAATGCCAGAGGGACGGAAGTGCGTGGGCTGTATTGGACGACCGATTGACGAGTTGAAGAGGGCTGTATTGGGCAAGTGTTCCAGGATTTTATCAAGAGTATGTAGCCCTTTGGAGATTAAGCAGATAATGAAAGCTGAGAAGGAGTGCCCGGCGAATCAGCTTCGGCCCGAGCAGCTAATAGTGAATGAGAGGCAGTTACGTCCAGAAGAATTGGCCGAGATTTTGGGCTGTGCGATACCTCCGCAGAAGTTGAAGCCGGGAAGGTATTGGTACGACAAGGACTCGGGGCTTTGGGGAAAGGAAGGAGAGAAGCCTGACAGGATAATTAGTTCAAAATTGAATGTTGGAGGTAAGCTTCGGGCGGATGCAAGCAAAGGGAGCACAAAAGTTTTTATAAATGGGCGTGAAATCACCAAGGTTGAGCTCAGAGTACTGAAGTTGGCCAACGTGCAGTGTCCTCGTGATACTCATTTCTGGGTGTATGATGATGGATCTTATGAGGAAGAGGGTCAAAATAATATTAAAGGAAACATATGGGGAAAGGCATCGACTCGCTTGCTGTGTTCGTTATTTTCACTTCCAGTACCTCCCGTCAATCTCCATGCACCCAAAGAAGATCCAACCACCATATCTGGCAGATCTGTGCCAGATTATTTGGAGCATGGGAGAATTCATAAGCTTCTCTTGTTTGGGATTGAAGGATCTGGAACTAGCACTTTGTTTAAGCAGGCTAGATTTTTATATGGGAACAAGTTCACTCCAGAAGAGCTTCAGAATATAAAGCTTATGATTCAAAGCAATGTATATAAGTATCTTAGTACTTTGCTTGAGGGGCGGGAGCGGTTTGAAGAAGAAGCTATTATTGAAAAGAAAACTGGAGCCGTTATAGAAGAGAAATTGGATAAAAAGGCTGGCACAGCTGAAACAGGAGTAACAGAAAGTAAGCAATGTTTATATTCAATCAACCAGAGATTCAAACACTTTTCTGATTGGTTATTGAATATTATGGCTACTGGTGACTTGGATGCTTTCTTTCCTGCTGCAACTCGTGAATATGCTCCAATTGTGGATGAAATGTGGAAAGATTCTGCACTTCAGGAAACATACAGGAGAAGAGATGAATTGCATAGCCTTCCTGATGTTACAAAATATTTTCTTGATCGGGTGATAGAGATATCAAGCAATGAATACGAGCCTTCTGACAAGGATATTTTGTATGCTGAAGGAGTCAGTCAAAGCAATGGCCTTGCTTTTATGGAATTTTATTTTGATGATAGGAGCCCCGTGTCTGAATTATATGGTGAAAATCTTGAACTGGCCCCTCCATTAACGAAATACCAACTAATTCAAATAAATTCTGAAGGACTGGTTGATGGTTGCAAATGGTTAGATATGTTTGAAGACGTGAGGGCCATGATATTTTGTGTTTCCTTGAGTGACTATGACCAGATGTTGTCCCATAGTAAGGGTCCTCTGCAGAATAAAATGCTGGCTAGCAGAAACTTGTTTGAGCATTTGGTAAGGCACCCTTGTTTTGGGAATACTCCTTTTCTGCTGCTGTTAAACAAGTATGATGCATTTGAGGAAAAGATAAATCAGGTTCCATTGTCGAGTTGTGAGTGGTTCCAGGACTTCTGCCCTGTGAAACCACACAACAACAATCAGACATTGGCACAACAAGCATACTATTACATTGCAGTGAAATTCAAGGAGCTATATTTCTCCATTAGTGGGCAAAAGTTGTTTGTTTGGCACACACGAGCTCGAGAGCGTGCTTCAGTGGATGAGGCATTTAGGTATATTCGAGAGGTTCTCAAATGGGAAGAAGAGAAGAACGATAGTATGTATGATATCGTTGGTGATGAGTCATTTTACAGCACTGAAATAAGTTCCTCACCAGGCGTGAATAACTTTCCAGTTACTTGA 2637 43.65 MASDTNEENAWQEALRRMLPAGAPLPDEEHLDYSIAVEYQGPPVAHELPKIDPLDLESLSILSPSVVPISDISSIPIVYPIAPRVSRFNRLSNGAVPRSPVKSQRSSSVPRVQLESHNGERSKFGNGVDEAFSSELSAQHLNSESEPAIAEGKRANTVTFVTPRDSEDDEEDVFSSPRSCTTDVMTSPALSHSREKRAKKKGICSRCGRGNRLKEREACLVCDAQYCSNCLLKAMGSMPEGRKCVGCIGRPIDELKRAVLGKCSRILSRVCSPLEIKQIMKAEKECPANQLRPEQLIVNERQLRPEELAEILGCAIPPQKLKPGRYWYDKDSGLWGKEGEKPDRIISSKLNVGGKLRADASKGSTKVFINGREITKVELRVLKLANVQCPRDTHFWVYDDGSYEEEGQNNIKGNIWGKASTRLLCSLFSLPVPPVNLHAPKEDPTTISGRSVPDYLEHGRIHKLLLFGIEGSGTSTLFKQARFLYGNKFTPEELQNIKLMIQSNVYKYLSTLLEGRERFEEEAIIEKKTGAVIEEKLDKKAGTAETGVTESKQCLYSINQRFKHFSDWLLNIMATGDLDAFFPAATREYAPIVDEMWKDSALQETYRRRDELHSLPDVTKYFLDRVIEISSNEYEPSDKDILYAEGVSQSNGLAFMEFYFDDRSPVSELYGENLELAPPLTKYQLIQINSEGLVDGCKWLDMFEDVRAMIFCVSLSDYDQMLSHSKGPLQNKMLASRNLFEHLVRHPCFGNTPFLLLLNKYDAFEEKINQVPLSSCEWFQDFCPVKPHNNNQTLAQQAYYYIAVKFKELYFSISGQKLFVWHTRARERASVDEAFRYIREVLKWEEEKNDSMYDIVGDESFYSTEISSSPGVNNFPVT 878
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 26025840 26039535 - MELO3C001922.2.1 Cme12g02053 345270

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g02053 878 MobiDBLite consensus disorder prediction 164 192 - -
Cme12g02053 878 PANTHER EXTRA-LARGE GUANINE NUCLEOTIDE-BINDING PROTEIN 3-LIKE 18 870 - -
Cme12g02053 878 PRINTS Alpha G protein (transducin) signature 463 478 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cme12g02053 878 PRINTS Alpha G protein (transducin) signature 706 734 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cme12g02053 878 PRINTS Alpha G protein (transducin) signature 754 763 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cme12g02053 878 Pfam G-protein alpha subunit 460 841 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cme12g02053 878 SUPERFAMILY Transducin (alpha subunit), insertion domain 489 644 IPR011025 GO:0007165
Cme12g02053 878 ProSiteProfiles G-alpha domain profile. 460 853 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cme12g02053 878 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 460 845 IPR027417 -
Cme12g02053 878 SMART galpha_1 438 853 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cme12g02053 878 MobiDBLite consensus disorder prediction 92 127 - -
Cme12g02053 878 Gene3D - 491 645 IPR011025 GO:0007165
Cme12g02053 878 Gene3D - 688 852 IPR027417 -
Cme12g02053 878 CDD G-alpha 462 845 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cme12g02053 878 MobiDBLite consensus disorder prediction 92 115 - -
Cme12g02053 878 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 18 870 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g02053 - - - csv:101210419 1721.83
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02435 Cme-Chr6:31403596 Cme12g02053 Cme-Chr12:26025840 0 dispersed
Cme07g00170 Cme-Chr7:1125967 Cme12g02053 Cme-Chr12:26025840 1.36E-47 dispersed
Cme08g00527 Cme-Chr8:3290096 Cme12g02053 Cme-Chr12:26025840 0 dispersed
Cme12g00010 Cme-Chr12:173614 Cme12g02053 Cme-Chr12:26025840 7.80E-07 dispersed
Cme12g02053 Cme-Chr12:26025840 Cme11g00480 Cme-Chr11:4668830 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g922 . Blo16g00262 . . . . . Bma12g01280 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0314 Lsi02g00010 . . Cme12g02053 . . . . Bpe07g01085 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002284 3 3 2 2 2 1 3 1 1 2 1 1 3 2 2 3 1 3 3 1 2 2 2 2 2 2 2 4 2 2 62