Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g02054 ATGGTCTTCAAAGGCAGGTTTTTCTCGTCCTCCAAGAAATCCGATTCTTCCAGCCCCGACGGATCCAGTCCCCGGTTCCTTGGTTCTAACTCACCCATCAGATCCGACAAGAAGAAGAACAAATCAGCTGCCAAAGATGAATCCCAGATTTCTAATCCCAGCAGCAGTAGCTTCAGAGGTACTGTTCTGAAAGATGCTTCCCGGAGCAAGGATTGGAAACGAAAAGACAGTCATGCTCCGTTACCGATCGAGACGCCCTCGAAGTCTGGTTCAATATCCTCCTTGAACTTGGGGCCGAAGGGCAAGAAGTCGGCCGATGTGAAGGACGTAGCGTCATCGGTTTCACCTATTCTGGCATCATCACTCGGATTGAATAGGATAAAGACAAGATCAGGCCCACTGCCGCAGGAGAGCTTTTTGGGTTTCAAAGGTGATAAGGGCTCCTTGGGTTCGAGCAATCTTTCCAGGAATTGTGGTGATGGAAGCTCAGGCTCGAATTCAGGTTCAACATGGTCGGGGTCTTCTCGTGGGGGGAAGAAAGAGGCGGCGTGTCAGAAAAGATTGGGTTTTCAGGACAATGTTAAAAGCTATATTCACGATGCTAGCAATTCCGAGAATATGCCAATTGGTAATGCACCATCTACTGAACGGAATCCAAATTTGTTAGGACAGCCTCGGGTACAGAATATCGAATCATCCAATGAAGCCGGATGCTATGGATCATCATGGGGATTTTCTGAAGGATTAAGAAATTTAGATTTCTGTACGCCAGAGCCCTCTTATGATTGTGAAAATCCAAAGGAGTCTGAATCTCCTCGCTTTCAAGCTATACTCCGAGTCACAAGTGCTCCTCGAAGAAAGTATCCTGCTGACATCAAAAGTTTTTCCCATGAACTAAATTCGAAAGGCGTACGACCTTTCCCACTTTGGAAGTCACGTCGTTTAAATAATTTGGAGGAGATCTTAGTTATGATACGAGCAAAATTTGACAAGGCTAAGGAAGAAGTAGATTCTGACTTGGCTATTTTTGCTGCTGATCTGGTTGGAGTTCTTGAGAAAAATGTTGATACTCATCCAGAATGGCAAGAGACAATTGAAGACTTGTTGGTTTTAGCTCGAAGCTGTGCAATGTCATCCCCTGGTGAATTTTGGCTTCAGTGTGAAAGCATTGTCCAGGAATTGGATGATAGACGCCAAGAACTTCCTCCTGGCATGCTGAAACAACTTCATACTCGAATACTGTTCATTCTCACTAGATGTACCAGGTTGCTGCAGTTCCATAAAGAAAGTGGGCTAGCTGAAGATGAAAATGTTTTTCAACTTCGTCAGTCAAGAAATCTGCATTCTGCTGATAAACGCATGGCTCCGGCTATGGGAAGGGAAACAAAAAGTTCTAGTGCAGCTAAGGCTTCTAAGACACCATCTTCCAGGAAATCTTACAGCCAGGAGCAGCGTGGTTTGGATTGGAGCAGAGAACATGATATACTGCCTGGGAATAATGTTTCAACATCTCCGGATGATACTTCAAAGAATTTGGTATCTCCTACTGGCAGAGACCGGATAGCATCTTGGAAAAGATTGCCTTCTCCAGCACCAAAAACCGTGAAAGAATCTACTTTGAAGGATCAGGGTGATAATAAGAAATTTAAATCTCTGAACATGTCAAAAATCGGGATGAGTGTTTCTGAAACTGATTTTACTGCTGCTAAGGTTTCTGAGCTTCCTCTGCCCAGAGATTCTCACGACCAACCTACAAAGCACCAACATAAACCTTCTTGGGGTTGGGGTGATCAACCAACTGTATCTGATGAGAGTTCAATAATTTGTCGAATTTGTGAAGAAGAAATTCCTACTGCAAATGTGGAAGATCATTCAAGAATTTGTGCAGTTGCTGATCGATGTGATCAAAAGGGTATAAGTGTTAATGAACGTCTTCTCAGAATTGCTGAAACTTTAGAGAAGATGATTGAGTCTTTTACGCAGAAGGATTCTCAGCATGTAGGAAGTCCGGATGTTGCAAAAGTTTCAAATTCTAGCATGACCGAAGAATCTGATATTTCCCCAAAACATAGTGATTGGTCCCGCAGGGGCTCAGAAGACATGCTAGATTGCTTCCATGAAACTGATAGTTCTGTATTCATGGATGACTTAAAAGGTTTACCTTCCATGTCTTGTAAAACTCGTTTTGGTCCAAAATCTGATCAAGGTATGACAACATCATCGGCTGGTAGCATGACTCCTAGATCTCCTTTGTTAACACCAAGAACCAGTCAGTTTGACTTGTTTTTGGCAGGAAAAGGTGCTTACTATGAACATGACGATCTTACACAGATCAGTGATTTGGCAGATATTGCACGTTGTTCAGCTAATACACCTCTGGGGGATGATTGCTCGATGCAGTATCTGCTAACATGCCTTGAAGACTTAAGAGTTGTCATTAACCGCAGGAAGTTTAATGCACTGACAGTTGACACGTTTGGCACTCGCATTGAAAAGTTAATCCGGGAGAAATATTTGCAACTTTGTGAGCTGGTGGATGATGAAAAGATCGACTTAGCAAGCACTGTCATTGATGAAGACACTCCTCTTGAAGATGACATTGTTCGTAGCTTAAGAACTAGTCCCATCCATTCTTCAAAGGATCGTACATCAATTGATGACTTTGAGATTATAAAACCAATCAGCCGTGGGGCATTTGGTCGGGTTTTCTTGGCTAAAAAGAGGACTACGGGGGATCTTTTTGCAATAAAGGTTTTGAAGAAAGCTGATATGATTCGGAAGAACGCCGTCGAAAGTATTTTGGCAGAACGTAATATTTTAATTTCTGTGCGCAACCCTTTTGTGGTTCGCTTCTTTTACTCTTTTACTTGTCGTGACAATTTGTATCTTGTGATGGAGTATTTGAATGGAGGAGACCTTTACTCTCTGTTGAGAAATTTGGGCTGCTTAGATGAAGAAGTTGCTCGTGTATATATCGCAGAAGTTGTTCTTGCATTGGAGTATTTGCATTCACTTGGGGTTGTTCATCGGGACTTAAAGCCTGATAATTTATTAATAGCACATGATGGCCATATTAAGCTGACAGATTTTGGGCTTTCCAAGGTTGGTCTAATCAACAGTACTGATGACTTGTCTGGACCTGCTGTTAGTGGGACCACTCTTCTTGGCTATGATGAGCCTACCATGTCTGCCTCTGAGCATCAACAAGAAAGACGGAAGAAACGTTCTGCTGTTGGCACACCAGACTATTTGGCACCAGAGATACTATTGGGAACTGGACATGGCGCCACAGCTGACTGGTGGTCTGTTGGGATCATTTTATTTGAACTTATTGTTGGTATTCCACCCTTCAATGCAGAGCATCCCCAGACTATATTTGATAACATTCTCAATCGTAAGATCCCTTGGCCTCAAATACCTGAAGAGATGAGCCATGATGCTCAAGATTTAATTGATCGATTATTGACGGAAGATCCTCACCAGCGACTTGGAGCTATAGGTGCATCAGAGGTGAAACAACATATGTTCTTCAAAGATATTAACTGGGACACGCTTGCCCGACAAAAGGCTGCATTTGTTCCAACATCTGAAAGTGCCCTTGATACTAGTTATTTTACTAGTCGCTATTCGTGGAATCATTCAGATGATCATGTCTATCCACACAGTGAACTTGAGGATTCCAGTGATGCCGATAGCTTGAGTGGTGATAGTAGTTTGAGCAATCGTCAAGATGAAGTGGGAGATGAATGTGGGGGTCTTACAGATTTTGAGCCCGGTGCTTCTGTCAATTACTCATTCAGTAATTTCTCTTTCAAGAATCTCTCCCAGCTCGCATCCATCAACTATGACCTGCTTTCCAAGGGTTTGAAGGATGATCCTCCCAATCATGATGCATAA 3897 42.9 MVFKGRFFSSSKKSDSSSPDGSSPRFLGSNSPIRSDKKKNKSAAKDESQISNPSSSSFRGTVLKDASRSKDWKRKDSHAPLPIETPSKSGSISSLNLGPKGKKSADVKDVASSVSPILASSLGLNRIKTRSGPLPQESFLGFKGDKGSLGSSNLSRNCGDGSSGSNSGSTWSGSSRGGKKEAACQKRLGFQDNVKSYIHDASNSENMPIGNAPSTERNPNLLGQPRVQNIESSNEAGCYGSSWGFSEGLRNLDFCTPEPSYDCENPKESESPRFQAILRVTSAPRRKYPADIKSFSHELNSKGVRPFPLWKSRRLNNLEEILVMIRAKFDKAKEEVDSDLAIFAADLVGVLEKNVDTHPEWQETIEDLLVLARSCAMSSPGEFWLQCESIVQELDDRRQELPPGMLKQLHTRILFILTRCTRLLQFHKESGLAEDENVFQLRQSRNLHSADKRMAPAMGRETKSSSAAKASKTPSSRKSYSQEQRGLDWSREHDILPGNNVSTSPDDTSKNLVSPTGRDRIASWKRLPSPAPKTVKESTLKDQGDNKKFKSLNMSKIGMSVSETDFTAAKVSELPLPRDSHDQPTKHQHKPSWGWGDQPTVSDESSIICRICEEEIPTANVEDHSRICAVADRCDQKGISVNERLLRIAETLEKMIESFTQKDSQHVGSPDVAKVSNSSMTEESDISPKHSDWSRRGSEDMLDCFHETDSSVFMDDLKGLPSMSCKTRFGPKSDQGMTTSSAGSMTPRSPLLTPRTSQFDLFLAGKGAYYEHDDLTQISDLADIARCSANTPLGDDCSMQYLLTCLEDLRVVINRRKFNALTVDTFGTRIEKLIREKYLQLCELVDDEKIDLASTVIDEDTPLEDDIVRSLRTSPIHSSKDRTSIDDFEIIKPISRGAFGRVFLAKKRTTGDLFAIKVLKKADMIRKNAVESILAERNILISVRNPFVVRFFYSFTCRDNLYLVMEYLNGGDLYSLLRNLGCLDEEVARVYIAEVVLALEYLHSLGVVHRDLKPDNLLIAHDGHIKLTDFGLSKVGLINSTDDLSGPAVSGTTLLGYDEPTMSASEHQQERRKKRSAVGTPDYLAPEILLGTGHGATADWWSVGIILFELIVGIPPFNAEHPQTIFDNILNRKIPWPQIPEEMSHDAQDLIDRLLTEDPHQRLGAIGASEVKQHMFFKDINWDTLARQKAAFVPTSESALDTSYFTSRYSWNHSDDHVYPHSELEDSSDADSLSGDSSLSNRQDEVGDECGGLTDFEPGASVNYSFSNFSFKNLSQLASINYDLLSKGLKDDPPNHDA 1298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 26044146 26088074 + MELO3C001921.2.1 Cme12g02054 345271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g02054 1298 CDD STKc_MAST_like 894 1182 - -
Cme12g02054 1298 MobiDBLite consensus disorder prediction 660 694 - -
Cme12g02054 1298 ProSiteProfiles Protein kinase domain profile. 888 1177 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g02054 1298 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1007 1019 IPR008271 GO:0004672|GO:0006468
Cme12g02054 1298 Coils Coil 642 662 - -
Cme12g02054 1298 MobiDBLite consensus disorder prediction 64 81 - -
Cme12g02054 1298 MobiDBLite consensus disorder prediction 464 483 - -
Cme12g02054 1298 Gene3D Transferase(Phosphotransferase) domain 1 972 1195 - -
Cme12g02054 1298 MobiDBLite consensus disorder prediction 496 516 - -
Cme12g02054 1298 MobiDBLite consensus disorder prediction 84 98 - -
Cme12g02054 1298 MobiDBLite consensus disorder prediction 1 178 - -
Cme12g02054 1298 ProSiteProfiles AGC-kinase C-terminal domain profile. 1178 1281 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cme12g02054 1298 MobiDBLite consensus disorder prediction 661 684 - -
Cme12g02054 1298 MobiDBLite consensus disorder prediction 201 222 - -
Cme12g02054 1298 MobiDBLite consensus disorder prediction 46 63 - -
Cme12g02054 1298 PANTHER SERINE/THREONINE PROTEIN KINASE IREH1-RELATED 22 1296 - -
Cme12g02054 1298 Gene3D Phosphorylase Kinase; domain 1 886 1206 - -
Cme12g02054 1298 MobiDBLite consensus disorder prediction 1220 1253 - -
Cme12g02054 1298 PANTHER SERINE/THREONINE-PROTEIN KINASE 22 1296 - -
Cme12g02054 1298 MobiDBLite consensus disorder prediction 447 546 - -
Cme12g02054 1298 MobiDBLite consensus disorder prediction 9 30 - -
Cme12g02054 1298 MobiDBLite consensus disorder prediction 148 176 - -
Cme12g02054 1298 SUPERFAMILY Protein kinase-like (PK-like) 885 1219 IPR011009 -
Cme12g02054 1298 Pfam Protein kinase domain 888 1177 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g02054 1298 SMART serkin_6 888 1177 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g02054 1298 Coils Coil 315 335 - -
Cme12g02054 1298 MobiDBLite consensus disorder prediction 575 599 - -
Cme12g02054 1298 MobiDBLite consensus disorder prediction 728 750 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g01488 Cme-Chr9:20083134 Cme12g02054 Cme-Chr12:26044146 0 dispersed
Cme12g02054 Cme-Chr12:26044146 Cme01g00585 Cme-Chr1:4536223 1.03E-61 dispersed
Cme12g02054 Cme-Chr12:26044146 Cme02g00269 Cme-Chr2:2258759 3.89E-79 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65363 PF00069 Pkinase 8.40E-66 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g02054 - - csv:101214945 2458.71