Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g0006 ATGGCGGACGGAGATGGCAGCGTGGAAAGCTTCGATCTCCTGCCTTCTGCTGTCCTTGCTACAATCATGACTAAGCTCGATTTGCCTTCCATCTGCTCCCTTGCCTCCACATGCAGAACCTTCCATTCTTGTGCTTCTCAAATTCTCAATTTTCTCCCCACTTTTCATCTTCTTGAAATTTCTCCATCGGTGGAATTTCTGAGGCCTCTACTGCCTCCAAATCCTTTCCTGAGAAGCCTAAAGGTAGACTGTGGTCAGCTTGATGACTCTGCTATCCAGCTTTTGCTGAAGCCTTCCTTGCACGAACTCTGTCTTCATAATTGCACTGATTTCAGTGGGAAATTGCTTTCTGAGATCGGAGGGTGCTGCAAGGATCTAAGGTCCCTCTATTTGAGTTCAGTTGCTGAAAAAAGAGGTCGGGCAATTCATATTGCGGATCTAGAAGAGTTACTAAGTGGTTGCACACAGTTGGAAGCATTAGCCTTGATGTTTGATGTCTCATTTTTCCTTCGTCAAAATTTTGCTCGAGTCTGGGCTATGGCTTCAGAAAAACTAACATCTCTGGAGATTGGCTGTATCTATTCTGTTACGGTCACCGAACTGCTCAGCCAAAATTTGGGTGTTGGTAATTCTATGAATAGGATTGTCCCATCCATGTGGCCTAACATTGAAAAGTTGTGCCTTTCAGTGGACTACATAACTGATGCTATGGTTGGTGCAATATCAAAAGGTCTTATCTCCTTGACTCATTTGGAACTACAAGATGCCCCCATTATTGAACCAAGATTTTCTTTTGACCTAACCAACGTTGGCCTTCAACAAATCAATCAGCTATCAAAATTGAGGCATCTCTCTTTGGTGCGAAGTCAAGAATTTCTTGTAACTTATTTTAGAAGAGTCAACGATCTTGGGATCCTCTTAATGGCTGACGGATGTGCTGACTTGGAAAGCATCTGTCTCGGGGGCTTTTGTCGAGTTACAGACACAGGGTTCCGGACAATTCTGCATACATTCTCTAATTTAAATAAGCTTAGGGTGTTCCATGGAATCCAATTAACCCATCTAGTTTTCCATGACATCTCTGCTACTTCCCTTTCCTTGAAACATGTCAGCTTAAGATGGTGTAGTCTCCTAACAAACGATGCCGTTAAAAACTTATCGTTGAACAAGGATCTAAGTTATCTTGACTTGAGAGATTGCAGAAGCCTTCGGGATGAAGCACTTCGAGCTATCGGAACTATTCCAAAACTGACGACATTGCTTTTGGACGGGTCCGATATTAGTGATGCAGGATTGTCTCACTTAAGACCCTTGATTATGAGCTCACTAGTCTCCTTGTCTGTTAGGGGTTGCAAGAAGCTTACAGATAAATCCATCACTGTCCTGTTTGATGGCTTATCTAAAATAGAATTACATGTATTAGATCTATCCAACCTTCCTTACCTGTCTGATGCTGCAGTCTTACAACTAACCAGAAGCAAGTTTGCGATATCCGATCTCCGATTGCGTCAATGTCCACTCATTGGTGATGTCTCAGTCATGGCATTAGCCTCAATGCAGGTCAATGAAGACCAACGACACGGGAGTAGCTTGCGGCTGTTGGATTTGTACAACTGTGGTGGCCTTACACAGCTCTCGTTCAAGTGGTTAAAGAACCCATACTTTCCAAGGATGAGATGGTTGGGTGTGACAGGAAGTCTACATCGCGACTTGGTAGATGCTTTAGCTAGAAGTAGACCGTTCTTGCGTGTAGCATGTCAAGGCGAGGAGTTGGGTGCCGACCATTGGGATAGCTCAGACAGTTTCTATACGCACCACTATGATGAGGTGGATGAATTTGAACAGTGGCTCTTGGATGGTGAGGTCGACGAGGATATAGCAGATGATGAAAATGATGCAGAGCTAATCCTATGA 1914 43.89 MADGDGSVESFDLLPSAVLATIMTKLDLPSICSLASTCRTFHSCASQILNFLPTFHLLEISPSVEFLRPLLPPNPFLRSLKVDCGQLDDSAIQLLLKPSLHELCLHNCTDFSGKLLSEIGGCCKDLRSLYLSSVAEKRGRAIHIADLEELLSGCTQLEALALMFDVSFFLRQNFARVWAMASEKLTSLEIGCIYSVTVTELLSQNLGVGNSMNRIVPSMWPNIEKLCLSVDYITDAMVGAISKGLISLTHLELQDAPIIEPRFSFDLTNVGLQQINQLSKLRHLSLVRSQEFLVTYFRRVNDLGILLMADGCADLESICLGGFCRVTDTGFRTILHTFSNLNKLRVFHGIQLTHLVFHDISATSLSLKHVSLRWCSLLTNDAVKNLSLNKDLSYLDLRDCRSLRDEALRAIGTIPKLTTLLLDGSDISDAGLSHLRPLIMSSLVSLSVRGCKKLTDKSITVLFDGLSKIELHVLDLSNLPYLSDAAVLQLTRSKFAISDLRLRQCPLIGDVSVMALASMQVNEDQRHGSSLRLLDLYNCGGLTQLSFKWLKNPYFPRMRWLGVTGSLHRDLVDALARSRPFLRVACQGEELGADHWDSSDSFYTHHYDEVDEFEQWLLDGEVDEDIADDENDAELIL 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4954475 4958351 + PI0005878.1 Cmetu01g0006 345280

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g0006 637 SUPERFAMILY RNI-like 66 288 - -
Cmetu01g0006 637 Gene3D Ribonuclease Inhibitor 42 470 IPR032675 -
Cmetu01g0006 637 PANTHER UNCHARACTERIZED 354 547 - -
Cmetu01g0006 637 SMART LRR_CC_2 390 414 IPR006553 -
Cmetu01g0006 637 SMART LRR_CC_2 468 493 IPR006553 -
Cmetu01g0006 637 SMART LRR_CC_2 97 122 IPR006553 -
Cmetu01g0006 637 SMART LRR_CC_2 312 337 IPR006553 -
Cmetu01g0006 637 SMART LRR_CC_2 494 519 IPR006553 -
Cmetu01g0006 637 SMART LRR_CC_2 440 465 IPR006553 -
Cmetu01g0006 637 SMART LRR_CC_2 364 389 IPR006553 -
Cmetu01g0006 637 SUPERFAMILY RNI-like 305 565 - -
Cmetu01g0006 637 FunFam F-box/LRR-repeat protein 10 isoform A 48 464 - -
Cmetu01g0006 637 SUPERFAMILY F-box domain 8 47 IPR036047 GO:0005515
Cmetu01g0006 637 Pfam F-box domain 11 47 IPR001810 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g0006 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g0006 Cmetu-Chr1:4954475 Cmetu01g2709 Cmetu-Chr1:9271694 1.30E-50 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g223 . . . . . . . . . Cmo11g01759 . . . . Sed04g3823 Cpe04g00612 . Bhi05g01663 Tan02g0637 Cmetu01g0006 . . . . . . . . . . . . . . . . . . . Blo04g00588 . . Bda14g00633 . . Bma03g00621 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006869 2 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 3 2 37