Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g0052 ATGGAAGATTCCTCACACCAGTCATCGGTGTTTCAGAAGATATGTGGCCATTCTTACCTCACTTCTAGACTTTCCCCTGACCTTCACTCCACACGGTTGACCAGTGTATTTGCTAATGGGGTTTTGGAGAATCCCTTGAAGACAGCTTATCATGGGACTGGCTTGGCTGGAGTTTCACCCACTTCTCCTTTTCTTGTACAAGCTCCTTCTGAGAAAGGTGCAGCTGGCTTTGCTGTGGATTTTCTTATGGGAGGAGTATCTGCTGCTGTTTCTAAAACAGCTGCTGCTCCAATTGAGCGTGTCAAATTGCTGATCCAAAATCAGGACGAGATGCTTAAGACTGGTAGGCTATCTGAGCCATACAAAGGAATCACCGATTGCTTTGCCCGAACAATTAAAGATGAAGGAGTCATATCTCTATGGAGGGGAAACACTGCAAATGTTATCAGATACTTCCCCACACAAGCTTTGAATTTTGCCTTCAAGGATTACTTCAAGAGGCTGTTCAACTTCAAGAAAGACAGAGATGGTTACTGGAAATGGTTTGCTGGGAATTTGGCCTCTGGTGGTGCTGCTGGTGCTTCATCTCTTTTATTTGTCTATTCCCTTGATTATGCTAGAACTCGTCTGGCCAATGATGCTAAGGCTGCTAAAAAGGGTGGTGAGAGGCAGTTTAATGGTCTTGTTGACGTTTACAAGAAAACCCTTAAATCTGATGGCATTGCTGGGCTGTATCGTGGATTTAACATCTCTTGTGTTGGAATTATTGTGTACCGTGGTCTTTACTTTGGAATGTATGATTCAATGAAGCCTGTGGTTTTGGTTGGCGATTTGCAGGATAGTTTCCTTGCTAGTTTCTTGCTTGGTTGGTGTATCACGATAGGAGCTGGTTTGGCTTCTTACCCAATCGATACTGTCCGCAGAAGAATGATGATGACCTCAGGTGAAGCAGTCAAATATAATAGCTCATTGGATGCATTCAAACAGATAGTTAAGAATGAGGGAACCAAATCTCTCTTCAAGGGTGCTGGGGCAAACATTCTGCGTGCCGTTGCCGGTGCTGGTGTGTTGGCTGGGTATGATAAGCTTCAGCTCCTTGTTCTTGGCAAGAAATATGGTTCCGGTGGTGGTGGTTAA 1137 44.5 MEDSSHQSSVFQKICGHSYLTSRLSPDLHSTRLTSVFANGVLENPLKTAYHGTGLAGVSPTSPFLVQAPSEKGAAGFAVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMLKTGRLSEPYKGITDCFARTIKDEGVISLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYKKTLKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSMKPVVLVGDLQDSFLASFLLGWCITIGAGLASYPIDTVRRRMMMTSGEAVKYNSSLDAFKQIVKNEGTKSLFKGAGANILRAVAGAGVLAGYDKLQLLVLGKKYGSGGGG 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2455319 2458960 - PI0007564.2 Cmetu01g0052 345326

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g0052 378 ProSiteProfiles Solute carrier (Solcar) repeat profile. 180 272 IPR018108 -
Cmetu01g0052 378 Pfam Mitochondrial carrier protein 76 172 IPR018108 -
Cmetu01g0052 378 Pfam Mitochondrial carrier protein 281 367 IPR018108 -
Cmetu01g0052 378 Pfam Mitochondrial carrier protein 179 272 IPR018108 -
Cmetu01g0052 378 FunFam ADP,ATP carrier protein, mitochondrial 78 373 - -
Cmetu01g0052 378 SUPERFAMILY Mitochondrial carrier 76 362 IPR023395 -
Cmetu01g0052 378 ProSiteProfiles Solute carrier (Solcar) repeat profile. 284 366 IPR018108 -
Cmetu01g0052 378 Gene3D Mitochondrial carrier domain 78 373 IPR023395 -
Cmetu01g0052 378 ProSiteProfiles Solute carrier (Solcar) repeat profile. 75 168 IPR018108 -
Cmetu01g0052 378 PRINTS Adenine nucleotide translocator signature 180 193 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cmetu01g0052 378 PRINTS Adenine nucleotide translocator signature 77 89 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cmetu01g0052 378 PRINTS Adenine nucleotide translocator signature 121 142 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cmetu01g0052 378 PRINTS Adenine nucleotide translocator signature 285 301 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cmetu01g0052 378 PRINTS Adenine nucleotide translocator signature 154 166 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cmetu01g0052 378 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 70 376 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cmetu01g0052 378 PRINTS Mitochondrial carrier protein signature 289 311 IPR002067 GO:0055085
Cmetu01g0052 378 PRINTS Mitochondrial carrier protein signature 195 213 IPR002067 GO:0055085
Cmetu01g0052 378 PRINTS Mitochondrial carrier protein signature 245 263 IPR002067 GO:0055085
Cmetu01g0052 378 PRINTS Mitochondrial carrier protein signature 143 163 IPR002067 GO:0055085
Cmetu01g0052 378 PRINTS Mitochondrial carrier protein signature 80 93 IPR002067 GO:0055085
Cmetu01g0052 378 PRINTS Mitochondrial carrier protein signature 93 107 IPR002067 GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g0052 K05863 - - csv:101212128 704.901
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g0052 Cmetu-Chr1:2455319 Cmetu03g1926 Cmetu-Chr3:1246160 6.80E-137 dispersed
Cmetu01g0052 Cmetu-Chr1:2455319 Cmetu03g0019 Cmetu-Chr3:552952 2.10E-29 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu04g0917 . 1 409 Antiporters AT5G46110 79.3 2.0e-174 609.0
Cmetu10g0215 . 86 415 Antiporters AT5G46110 80.0 2.2e-149 525.8
Cmetu06g1126 . 1 395 Antiporters AT5G54800 74.2 6.9e-161 563.9
Cmetu04g1453 . 41 395 Antiporters AT5G54800 78.9 5.5e-158 554.3
Cmetu04g1216 . 1 317 Antiporters AT5G54800 68.3 1.7e-111 399.8
Cmetu06g2347 . 89 402 Antiporters AT5G54800 53.5 1.1e-86 317.4
Cmetu09g0702 . 29 398 Antiporters AT3G01550 61.5 1.4e-121 433.3
Cmetu12g1268 . 53 417 Antiporters AT3G01550 59.0 4.4e-112 401.7
Cmetu12g1268 . 1 419 Antiporters AT5G33320 71.7 9.2e-156 547.0
Cmetu09g0702 . 9 401 Antiporters AT5G33320 55.3 1.4e-111 400.2
Cmetu04g1453 . 22 396 Antiporters AT1G61800 76.1 1.9e-161 565.8
Cmetu06g1126 . 39 396 Antiporters AT1G61800 79.1 1.2e-158 556.6
Cmetu04g1216 . 1 317 Antiporters AT1G61800 71.5 1.6e-123 439.9
Cmetu06g2347 . 106 408 Antiporters AT1G61800 53.1 7.0e-87 318.2
Cmetu06g2347 . 13 419 Antiporters AT5G17630 70.2 9.1e-151 530.4
Cmetu04g1453 . 81 394 Antiporters AT5G17630 53.6 9.0e-90 327.8
Cmetu04g1216 . 92 312 Antiporters AT5G17630 51.8 9.7e-60 228.0
Cmetu06g1807 . 30 399 Antiporters AT3G13320 78.9 1.5e-159 559.7
Cmetu11g0389 . 72 449 Antiporters AT3G13320 76.6 5.3e-157 551.2
Cmetu04g2431 . 57 426 Antiporters AT3G13320 76.0 1.7e-155 546.2
Cmetu08g1189 . 5 422 Antiporters AT2G38170 68.6 3.0e-150 528.9
Cmetu08g0861 . 8 405 Antiporters AT2G38170 62.3 5.5e-136 481.5
Cmetu12g0922 . 27 315 Antiporters AT2G38170 56.4 2.2e-84 310.1
Cmetu08g1189 . 1 390 Antiporters AT3G51860 68.0 1.6e-135 479.9
Cmetu08g0861 . 4 394 Antiporters AT3G51860 64.4 4.6e-135 478.4
Cmetu12g0922 . 38 315 Antiporters AT3G51860 62.5 1.6e-90 330.5
Cmetu11g0389 . 64 416 Antiporters AT3G51860 50.8 2.2e-84 310.1
Cmetu06g1807 . 30 370 Antiporters AT3G51860 50.4 1.0e-81 301.2
Cmetu08g0861 . 29 405 Antiporters AT5G01490 60.9 4.6e-124 441.8
Cmetu08g1189 . 34 427 Antiporters AT5G01490 57.9 2.4e-120 429.5
Cmetu12g0922 . 27 315 Antiporters AT5G01490 53.0 1.0e-78 291.2
Cmetu06g1807 . 29 399 Antiporters AT1G55720 75.0 3.5e-148 521.9
Cmetu11g0389 . 72 445 Antiporters AT1G55720 73.6 1.9e-146 516.2
Cmetu04g2431 . 57 423 Antiporters AT1G55720 71.2 2.0e-140 496.1
Cmetu06g1807 . 29 399 Antiporters AT1G55730 79.5 3.5e-161 565.1
Cmetu11g0389 . 54 445 Antiporters AT1G55730 74.9 2.5e-159 558.9
Cmetu04g2431 . 57 427 Antiporters AT1G55730 76.1 9.0e-157 550.4
Cmetu11g0808 . 22 527 Antiporters AT5G27150 75.2 5.9e-219 757.3
Cmetu02g0177 . 4 499 Antiporters AT5G27150 72.4 1.2e-211 733.0
Cmetu01g2066 . 25 538 Antiporters AT5G27150 69.3 1.7e-202 702.6
Cmetu01g0802 . 12 501 Antiporters AT5G27150 60.4 5.8e-166 581.3
Cmetu11g0808 . 22 536 Antiporters AT3G06370 71.9 3.0e-210 728.4
Cmetu02g0177 . 5 498 Antiporters AT3G06370 67.3 5.5e-188 654.4
Cmetu01g2066 . 25 540 Antiporters AT3G06370 66.1 7.2e-188 654.1
Cmetu01g0802 . 5 501 Antiporters AT3G06370 59.5 4.1e-159 558.5
Cmetu01g0802 . 1 507 Antiporters AT5G55470 69.7 2.1e-205 712.2
Cmetu11g0808 . 18 514 Antiporters AT5G55470 58.6 2.0e-166 582.8
Cmetu01g2066 . 16 524 Antiporters AT5G55470 56.0 4.5e-155 545.0
Cmetu02g0177 . 18 485 Antiporters AT5G55470 56.7 6.1e-152 534.6
Cmetu11g0808 . 22 527 Antiporters AT3G05030 75.8 1.1e-223 773.1
Cmetu02g0177 . 10 502 Antiporters AT3G05030 74.1 6.2e-216 747.3
Cmetu01g2066 . 25 541 Antiporters AT3G05030 68.9 4.9e-205 711.1
Cmetu01g0802 . 12 501 Antiporters AT3G05030 59.8 1.7e-165 579.7
Cmetu01g1942 . 41 181 Antiporters AT3G05030 59.6 1.2e-36 151.8
Cmetu04g2720 . 102 667 Antiporters AT1G15460 70.4 1.9e-231 798.9
Cmetu03g1809 . 99 659 Antiporters AT1G15460 64.7 1.7e-216 749.2
Cmetu12g2100 . 11 518 Antiporters AT1G15460 57.6 6.5e-163 571.2
Cmetu04g3037 . 102 495 Antiporters AT1G15460 60.9 5.9e-132 468.4
Cmetu04g3037 . 3 495 Antiporters AT3G06450 75.9 2.7e-222 768.8
Cmetu03g1809 . 3 638 Antiporters AT3G06450 56.4 2.4e-215 745.7
Cmetu12g2100 . 11 557 Antiporters AT3G06450 67.6 5.4e-215 744.6
Cmetu04g2720 . 6 647 Antiporters AT3G06450 55.7 9.2e-215 743.8
Cmetu04g3037 . 1 495 Antiporters AT2G47160 82.7 1.4e-250 862.8
Cmetu12g2100 . 11 544 Antiporters AT2G47160 75.8 7.2e-236 813.9
Cmetu04g2720 . 1 647 Antiporters AT2G47160 56.7 8.3e-216 747.3
Cmetu03g1809 . 4 638 Antiporters AT2G47160 56.9 2.4e-215 745.7
Cmetu04g2720 . 1 667 Antiporters AT1G74810 69.6 7.9e-277 949.9
Cmetu03g1809 . 4 660 Antiporters AT1G74810 65.3 1.5e-256 882.5
Cmetu04g3037 . 7 495 Antiporters AT1G74810 60.3 2.7e-168 589.3
Cmetu12g2100 . 11 518 Antiporters AT1G74810 56.0 2.3e-159 559.7
Cmetu04g3037 . 1 495 Antiporters AT3G62270 86.7 1.1e-254 876.3
Cmetu12g2100 . 11 580 Antiporters AT3G62270 73.3 1.1e-236 816.6
Cmetu03g1809 . 4 638 Antiporters AT3G62270 59.3 7.5e-222 767.3
Cmetu04g2720 . 1 647 Antiporters AT3G62270 57.7 2.2e-218 755.7
Cmetu03g1809 . 4 657 Antiporters AT4G32510 67.1 1.6e-261 899.0
Cmetu04g2720 . 1 664 Antiporters AT4G32510 64.4 2.4e-254 875.2
Cmetu04g3037 . 1 495 Antiporters AT4G32510 57.2 2.9e-162 569.3
Cmetu12g2100 . 12 524 Antiporters AT4G32510 51.6 4.0e-148 522.3
Cmetu03g1809 . 4 655 Antiporters AT5G25430 69.5 8.3e-263 903.3
Cmetu04g2720 . 7 664 Antiporters AT5G25430 66.2 3.4e-248 854.7
Cmetu04g3037 . 7 495 Antiporters AT5G25430 56.6 3.9e-159 558.9
Cmetu12g2100 . 12 530 Antiporters AT5G25430 52.9 9.8e-147 517.7
Cmetu09g0963 . 12 1140 Antiporters AT2G01980 65.5 0.0e+00 1385.5
Cmetu09g0963 . 20 738 Antiporters AT1G14660 66.5 5.1e-274 940.6
Cmetu03g1078 . 55 597 Antiporters AT5G11800 80.7 2.2e-230 795.4
Cmetu02g1469 . 19 587 Antiporters AT5G11800 75.4 1.8e-224 775.8
Cmetu06g0204 . 57 571 Antiporters AT5G11800 66.9 1.7e-179 626.3
Cmetu09g0526 . 33 247 Antiporters AT5G11800 72.1 5.6e-77 285.8
Cmetu10g0547 . 18 199 Antiporters AT5G11800 70.9 9.6e-61 231.9
Cmetu09g0029 . 45 234 Antiporters AT5G11800 52.3 3.4e-50 196.8
Cmetu04g2843 . 11 145 Antiporters AT5G11800 73.3 1.2e-47 188.3
Cmetu08g0079 . 70 206 Antiporters AT5G11800 57.4 1.9e-40 164.5
Cmetu05g0698 . 3 116 Antiporters AT5G11800 71.1 3.9e-38 156.8
Cmetu06g0204 . 31 569 Antiporters AT5G51710 80.0 2.5e-236 815.1
Cmetu02g1469 . 51 560 Antiporters AT5G51710 68.8 5.5e-183 637.9
Cmetu03g1078 . 53 571 Antiporters AT5G51710 67.5 1.7e-179 626.3
Cmetu09g0526 . 33 247 Antiporters AT5G51710 81.4 2.5e-90 330.1
Cmetu10g0547 . 18 199 Antiporters AT5G51710 78.6 3.3e-71 266.5
Cmetu09g0029 . 45 234 Antiporters AT5G51710 55.4 3.1e-53 206.8
Cmetu04g2843 . 11 146 Antiporters AT5G51710 75.7 5.5e-50 196.1
Cmetu08g0079 . 62 205 Antiporters AT5G51710 52.9 3.5e-44 176.8
Cmetu05g0698 . 3 117 Antiporters AT5G51710 74.8 4.7e-41 166.4
Cmetu02g1469 . 39 584 Antiporters AT2G19600 81.1 9.7e-231 796.6
Cmetu03g1078 . 46 597 Antiporters AT2G19600 78.4 1.4e-224 776.2
Cmetu06g0204 . 49 556 Antiporters AT2G19600 67.1 1.3e-171 600.1
Cmetu09g0526 . 33 247 Antiporters AT2G19600 71.2 1.0e-75 281.6
Cmetu10g0547 . 18 199 Antiporters AT2G19600 67.6 5.8e-58 222.6
Cmetu09g0029 . 45 234 Antiporters AT2G19600 51.8 6.0e-47 186.0
Cmetu04g2843 . 11 145 Antiporters AT2G19600 69.6 1.6e-44 177.9
Cmetu08g0079 . 70 199 Antiporters AT2G19600 58.6 3.4e-42 170.2
Cmetu06g2679 . 143 561 Antiporters AT1G49810 76.7 4.2e-180 627.9
Cmetu06g2679 . 1 576 Antiporters AT3G19490 77.8 1.3e-248 855.9
Cmetu05g1369 . 101 547 Antiporters AT5G12860 91.3 3.9e-234 807.7
Cmetu07g1969 . 1 493 Antiporters AT5G64280 67.4 6.1e-195 677.6
Cmetu07g1969 . 22 493 Antiporters AT5G64290 80.5 4.6e-214 741.1
Cmetu01g0052 . 3 377 Antiporters AT4G28390 80.7 1.5e-171 599.4
Cmetu03g1926 . 3 343 Antiporters AT4G28390 70.8 3.9e-132 468.4
Cmetu08g0466 . 3 312 Antiporters AT4G28390 57.0 1.0e-100 364.0
Cmetu12g0390 . 1 269 Antiporters AT4G28390 61.7 5.1e-92 335.1
Cmetu03g1926 . 1 343 Antiporters AT3G08580 81.2 1.1e-155 546.6
Cmetu01g0052 . 62 376 Antiporters AT3G08580 83.9 1.7e-148 522.7
Cmetu08g0466 . 1 313 Antiporters AT3G08580 59.2 1.3e-103 373.6
Cmetu12g0390 . 1 269 Antiporters AT3G08580 55.6 7.0e-81 298.1
Cmetu01g0052 . 61 376 Antiporters AT5G13490 89.0 6.9e-161 563.9
Cmetu03g1926 . 1 343 Antiporters AT5G13490 80.3 5.6e-155 544.3
Cmetu08g0466 . 1 313 Antiporters AT5G13490 60.6 4.7e-109 391.7
Cmetu12g0390 . 1 269 Antiporters AT5G13490 58.5 3.5e-88 322.4
Cmetu12g0390 . 1 263 Antiporters AT5G17400 76.4 1.3e-114 409.8
Cmetu01g0052 . 77 363 Antiporters AT5G17400 64.5 1.3e-109 393.3
Cmetu03g1926 . 90 343 Antiporters AT5G17400 63.4 8.9e-95 344.0
Cmetu02g1135 . 4 542 Antiporters AT1G08960 67.0 5.5e-188 654.4
Cmetu07g1800 . 13 537 Antiporters AT2G47600 72.7 1.4e-215 746.1
Cmetu04g3033 . 1 300 Antiporters AT1G79900 68.8 6.1e-117 417.5
Cmetu01g1573 . 1 287 Antiporters AT1G79900 66.3 5.2e-108 387.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000738 5 6 5 7 5 2 0 3 2 2 1 2 4 3 3 3 2 5 2 2 3 3 3 2 2 3 3 5 5 2 95