Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g0080 ATGTATTTTGCCATTGCCATTGCCATTGCCATTGTCGGTCGTCGGTCTCTTGAAACTCTCAACATTTTTTTCATCCTCAAATTCCTCTCTTCTTCGTCTTTTACGATTTTGTTTCATCGTCACCTGGAAGGCCGACCGGATCTCCGACCAGATAGCCTCATTCTAATTGCCATTTGCATTTTAAGAATATATGAACCGAGATTTGGAAGCAATGCTATGATGGGTCTGTTTGGGAACAATAATGAGCAGTTACCCGAAAGACGAGGCATTGTTTCTGGATTTTTTAAATCCTTAGGCAAAACGGAATATGGAAGTAGAGCTGTTCGTCGAGGAAGAAGACTTGGCCGAAGTACCAGAAAAAGATTCTCATGTTTGTTTTTGACGCTTGCAACGTCCTTCCTATTGTATTTGGCGGTCTTTGGCTTGAAAGTGAACTTTTATGATATAATTGGAGATAGCACGTCAGTGTCAGAAGTACAAGAACATTTGGGATCCAGAGACCAGAGACCTCCAACTAGCAAGCATCATCGGAAGCAACATTTCCCTTGTGATGTTGAGTTTGCGGAGTCAGTTGCTTACCTTGTGGAGCCTGAGGGTTTCATGAATGTTACACAGTTCTCCTTACAGTTCATAGAGCGCGAGGAAAAAGAATCTGAAACTGATTTATATATGCCTAAATTTGGAGGACATCAAACCCTTGAGGAAAGGGAGATATCCTTTTATGCAACAAATCAAAAACTTCATTGTGGTTTTATTAAAGGACCACCAGGATACCCAAGTACAGGGTTTGATTTAGATGAAAAGGACGATGCATACATGAAAACATGCAAGGTTGCAGTTTCCTCGTGCATTTTTGGGAGCTCTGATTTTTTGAGGCGGCCTACTAGCAAGCAGATCAGCGAGTATTCCAAGAAGAATGTATGTTTTGTCATGTTTGTGGACGAGCAAACACTATCGAAATTATCAGCTGAGGGAAATATTCCTGATGATAAGGGATACATTGGACTGTGGAAGATGGTTGTTGTGAGGAATTTACCCTACGAAGATATGCGCAGAACCGGAAAGGTGCCTAAATTTTTGTCACATCGCCTCTTCCCTTCTGCTAGGTATTCAATATGGCTAGACAGCAAAATGCGTCTTCAGGTAGATCCAATGCTAATTATTGAATATTTTCTGTGGCGAAAGAAGTCGGAGTATGCCATTTCAAACCACTACGACCGCCATTGTGTCTGGGAGGAAGTACAGCAAAATAAACGTCTGAATAAGTACAATCACACTGCCATTGACGAACAGTTTGCTTTTTATCAGTCTGATGGCCTTGTAAAGTTTGACCCTTCTGATATCAGTAGTGGTCTTCCTAGTTGTGAGTGTTCCATCCATTTTACTGCGGAGTTCTTCATTTACTTGCGTATGTTTTATAGTTTAGCATTTTTTTTTTTGTATCTATTACAATGCAGATGTTCCAGAAGGTTCCTTCATCGTCCGGGCACATACGCCAATGTCAAATTTATTTTCGTGTCTTTGGTTCAATGA 1533 40.9 MYFAIAIAIAIVGRRSLETLNIFFILKFLSSSSFTILFHRHLEGRPDLRPDSLILIAICILRIYEPRFGSNAMMGLFGNNNEQLPERRGIVSGFFKSLGKTEYGSRAVRRGRRLGRSTRKRFSCLFLTLATSFLLYLAVFGLKVNFYDIIGDSTSVSEVQEHLGSRDQRPPTSKHHRKQHFPCDVEFAESVAYLVEPEGFMNVTQFSLQFIEREEKESETDLYMPKFGGHQTLEEREISFYATNQKLHCGFIKGPPGYPSTGFDLDEKDDAYMKTCKVAVSSCIFGSSDFLRRPTSKQISEYSKKNVCFVMFVDEQTLSKLSAEGNIPDDKGYIGLWKMVVVRNLPYEDMRRTGKVPKFLSHRLFPSARYSIWLDSKMRLQVDPMLIIEYFLWRKKSEYAISNHYDRHCVWEEVQQNKRLNKYNHTAIDEQFAFYQSDGLVKFDPSDISSGLPSCECSIHFTAEFFIYLRMFYSLAFFFLYLLQCRCSRRFLHRPGTYANVKFIFVSLVQ 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19089926 19095876 + PI0017350.1 Cmetu01g0080 345354

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g0080 510 PANTHER ALKALINE CERAMIDASE-RELATED 108 454 IPR006852 -
Cmetu01g0080 510 Pfam Protein of unknown function (DUF616) 208 454 IPR006852 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g0080 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g0080 Cmetu-Chr1:19089926 Cmetu03g0092 Cmetu-Chr3:25969001 3.00E-95 dispersed
Cmetu01g0080 Cmetu-Chr1:19089926 Cmetu12g1149 Cmetu-Chr12:5101314 4.20E-57 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1405 . . . . . . . . . . . . . . Sed08g1886 . . Bhi04g02524 Tan11g0063 Cmetu01g0080 . Hepe02g3454 . Lcy10g2345 Cla08g00076 Cam08g0073 Cec08g0178 Cco08g0131 Clacu08g0087 Cmu08g0084 Cre08g0074 Cone4ag1221 . . . . . . . . . . . . . . . . . . . . . . . . Bhi09g01450 . . . . . . Cla09g00889 Cam09g0940 Cec09g0944 Cco09g0947 . . Cre09g0911 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007088 1 5 0 0 1 1 2 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 0 1 1 2 2 1 36