Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g0091 ATGTACCCATTGTACCAGCACCAGCTCAAAGGGAGACGTGCTCAAGTGCAAGAGCCTGAGTTTGACGAGATTGACCATCACCTGGAAGAAGTGCCTCCTGTGACACAAACACAAAATGAAGTTGGTTATGTTAGTCCAATGATGATGATGCCACCCTTTGATACGAGCTATTATCCTAGTCAATCGTCATACTTCAGATCAGGATATTACCATTCAGAAGTCGGTCCATCATTGTCAAACTTTGGAATAGAATATTACGATTTAAGGACCGACCAATCATCTTCATACATGCATCGACATGGACGCATGAAACTAGGTCAGATTCCTGAAGAAATACGATCAAGTATTGAAGGACTTTCACAGTGGAAATCCTATGTATCTCGTCTAATAGATGGAAGAGATCCAAAAACCACAGATGTTGAAGGAGATATATTAACAACTTTGGTGTATTTGGCTCGTGAGAAGAGACCTCAAGCCATGGATGCCTTGCTTAGGGTCTCATCCCAGATAAGCAATGGGCAAATCATACTCAATGTAGATTGTGGTTCGAACAACTCCGACGCCATAAAAGATGCACTTTGCTTTTTGATGGATGAAGAGAAGGGCCATGAGATTGCATATGTGGAATTCCGTGGTATGGACGGTTTTGGAGGCCCACGATATCTTGGAACAGGCTGCTTTCATAGAAGAGAGGGTTTCTTTTCTGCAATTCCCTCCTCAAAAACCTACCGCCACCGCAAACCTCCACCGCCGCAAATCTCTGCCGCAACTTCTCCTGCCAGCCCTGTTCAGATCCCGCCGCCTAGTTCAGATCCCGCCGCAAGTCTCGTCCGCCCAGTCCAGATCCAGTCTGAAGTAGTCCGTCGCTGCAAATTACCTCTGCCTTGCTCTGCTGCCGCGACCCTCACGCCCGTCCGCTGTCGAAACTCGAAAATCAAGTTCGATTTTCACCGAAACATACCACCTGTTTCAGATCTGTTTCTGATTTATCCTGACGCCGTCGAAAATCTCTTACAGTTCGCGTGA 1026 46.39 MYPLYQHQLKGRRAQVQEPEFDEIDHHLEEVPPVTQTQNEVGYVSPMMMMPPFDTSYYPSQSSYFRSGYYHSEVGPSLSNFGIEYYDLRTDQSSSYMHRHGRMKLGQIPEEIRSSIEGLSQWKSYVSRLIDGRDPKTTDVEGDILTTLVYLAREKRPQAMDALLRVSSQISNGQIILNVDCGSNNSDAIKDALCFLMDEEKGHEIAYVEFRGMDGFGGPRYLGTGCFHRREGFFSAIPSSKTYRHRKPPPPQISAATSPASPVQIPPPSSDPAASLVRPVQIQSEVVRRCKLPLPCSAAATLTPVRCRNSKIKFDFHRNIPPVSDLFLIYPDAVENLLQFA 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10080383 10085248 + PI0021257.1 Cmetu01g0091 345365

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g0091 341 MobiDBLite consensus disorder prediction 252 273 - -
Cmetu01g0091 341 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 133 210 - -
Cmetu01g0091 341 MobiDBLite consensus disorder prediction 238 274 - -
Cmetu01g0091 341 Pfam Cellulose synthase 135 210 IPR005150 GO:0016020|GO:0016760|GO:0030244
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g0091 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g0091 Cmetu-Chr1:10080383 Cmetu06g0475 Cmetu-Chr6:17606766 1.30E-30 dispersed
Cmetu01g0091 Cmetu-Chr1:10080383 Cmetu01g0128 Cmetu-Chr1:13989710 3.10E-48 wgd
Cmetu01g0091 Cmetu-Chr1:10080383 Cmetu11g2082 Cmetu-Chr11:10290586 2.70E-36 wgd
Cmetu01g0091 Cmetu-Chr1:10080383 Cmetu11g0855 Cmetu-Chr11:11506441 4.90E-17 wgd
Cmetu01g0091 Cmetu-Chr1:10080383 Cmetu02g2017 Cmetu-Chr2:19267087 6.60E-14 wgd
Cmetu01g0091 Cmetu-Chr1:10080383 Cmetu04g1136 Cmetu-Chr4:26630851 5.50E-13 wgd
Cmetu01g0091 Cmetu-Chr1:10080383 Cmetu06g1427 Cmetu-Chr6:9086291 1.50E-10 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g686 . . Bda07g00415 Bda09g00440 . . Bma10g00595 . . . . Cma09g01018 . . . Cpe06g00826 Cpe02g00829 Bhi09g01787 Tan01g3202 Cmetu01g0091 . . . . . . . . . . . Cone6ag0005 . . . Lsi02g01818 Csa07g01068 . . . . . . Bpe11g00592 . . Bma14g00677 . . Cmo09g01021 . . . . . . . . . . . . . . . . . . . . . . Chy01g01136 Cme01g00888
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0023550 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2