Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g0153 ATGGGTTCGATTCCTGTTCACGTTGCTTTTATAATGGATGGGAATAGGAGATATGCAAAGAAAAAGAAGCTGGCTGAAGGGGCTGGCCATAGGATTGGGTATTTGGCTTTGACATTCATGCTCAAGTACTGCTATGAATTGGGTGTGAAGTATGTAACTATTTATGCCTTCAGCATTGATAATTTTAGAAGAAGTCCAGAAGAAGTTCAAGGTGTGATGGATCTGATGTTGGAAAAAGTTGAATTGTTGATTAGAGAAGAAAGCCTTGTGAATCAATATGGAGTTAGACTTCATTTTATAGGAAACTTAAAATTATTGAGTGCACCTGTGAGGGACGCAATTGAAAGAGCTATGGAAGCCACTAGAAACAATAACAAAGCAGAACTTTCCATCTGTGTTGCTTACACTTCCACTGATGAAATTGTTCATGCTGTTGAAAGGTCTTGTGAAGAGAAATGGAATGAGATAAATTCAGAAACTGCAAATGGAGTAGGATATGGTTTCGGCAAATTAGGTGTGGCTAAAAATGGTGACAACTCCATAACCTTAGCTGATGTCGAGAAGCATATGTATACCGCCGTTACTCCCGACCCCGATATATTAATTCGCACATCGGGAGAGGCCCGCTTAAGCAATTTCCTTTTGTGGCAGACCTCTTCATGTTATTTGTATTCTCCTTCCGTGCTTTGGCCAGACATTAATTTTTGGTCTCTGTTCGAGTACATGTCGTCAAAATTTGGTCATTTATGGAGAACTTTGCTTCTTCAACCTTTTCGTAAGATAAACAACTCTTCCTCGGGCGACACTGGTTTATATCGTCGTCGGGTATCCGAACCTCTGCGGGCCTCCTCGGTCGCCATGGTTCCATTTGGATCCACAACTTACATGTCGTCCCTACTCAAATCCTATTATCCCAGGATGAGACAGAAACAGGAAATTAAAGATCGGCCATCAACATCAACATTTTTCTTCTTCCCTACTTGGGCAAAATGGATTTTTGGTACCCTATTGTCCCTCTTGGTACCCAATTGGAATAAATTGCAAACTATCGAAGATGAAGCCGAAATGGTGATCGAAGAGGTGGAAAATGTAGCAGAAGTAGTAGAAAAGGTAGCAGAACTAACAGAGAAAGTATCAGCAGAAATTGGTGAGAAACTTCCTGAGAAGAGTAAGCTCAAAGAGGCAGCTCAAGTTGTAGAAAATTATTCTAAGGAAATTGCCCATGATGCTCACTTAACACAAGATATCCTCCATAAGGTGGAAGAGTGGAAGCAAAAGGTAGATAAGTCGAAGATAGATATGAATGAACCGAATAAAGAAAGAAATAAGGCAAATTAG 1338 40.36 MGSIPVHVAFIMDGNRRYAKKKKLAEGAGHRIGYLALTFMLKYCYELGVKYVTIYAFSIDNFRRSPEEVQGVMDLMLEKVELLIREESLVNQYGVRLHFIGNLKLLSAPVRDAIERAMEATRNNNKAELSICVAYTSTDEIVHAVERSCEEKWNEINSETANGVGYGFGKLGVAKNGDNSITLADVEKHMYTAVTPDPDILIRTSGEARLSNFLLWQTSSCYLYSPSVLWPDINFWSLFEYMSSKFGHLWRTLLLQPFRKINNSSSGDTGLYRRRVSEPLRASSVAMVPFGSTTYMSSLLKSYYPRMRQKQEIKDRPSTSTFFFFPTWAKWIFGTLLSLLVPNWNKLQTIEDEAEMVIEEVENVAEVVEKVAELTEKVSAEIGEKLPEKSKLKEAAQVVENYSKEIAHDAHLTQDILHKVEEWKQKVDKSKIDMNEPNKERNKAN 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1719444 1723865 + PI0018346.1 Cmetu01g0153 345427

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g0153 445 CDD Cis_IPPS 7 240 IPR001441 GO:0016765
Cmetu01g0153 445 Pfam Putative undecaprenyl diphosphate synthase 11 242 IPR001441 GO:0016765
Cmetu01g0153 445 Coils Coil 347 367 - -
Cmetu01g0153 445 Hamap Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 4 254 IPR001441 GO:0016765
Cmetu01g0153 445 ProSitePatterns Undecaprenyl pyrophosphate synthase family signature. 199 216 IPR018520 GO:0016765
Cmetu01g0153 445 NCBIfam polyprenyl diphosphate synthase 4 157 IPR001441 GO:0016765
Cmetu01g0153 445 Coils Coil 110 130 - -
Cmetu01g0153 445 Gene3D - 1 244 IPR036424 GO:0016765
Cmetu01g0153 445 SUPERFAMILY Undecaprenyl diphosphate synthase 2 242 IPR036424 GO:0016765
Cmetu01g0153 445 PANTHER DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE FAMILY MEMBER 1 242 IPR001441 GO:0016765
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g0153 K11778 - - csv:101205649 463.381
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g0153 Cmetu-Chr1:1719444 Cmetu11g1284 Cmetu-Chr11:7206173 4.50E-31 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g983 . . . . . . . . . . . . . . Sed06g0768 . . Bhi05g00899 Tan02g1190 Cmetu01g0153 Lac12g0059 Hepe02g0731 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004436 0 4 0 2 2 1 2 1 1 1 1 1 1 1 1 2 1 2 1 1 1 2 1 1 1 2 1 3 1 1 40