Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g0155 ATGGGTTACATATGTGATTTCTGTGCGCAACAAAGGTCGATTGTGTATTGCCGATCTGATGCTGCAGCTTTGTGCTTATCTTGTGATCGAAATGTTCACTCTGCTAATGCCTTGTCAAGGCGCCACTCGAGAACATTGTTATGTGACCGGTGCCATTCACAAGCAGCATTTGTTAGATGTCCTGAAGAGAATATTTCACTTTGTCAAAATTGTGACTATATGGGGCATAGCTCATCTGCCTCCATTTCATCTCGAAAGAGGCAACCAATCAATTGTTACTCAGGCTGCCCGACGGCTGCAGAGCTCTCATCTATCTGGTCATTTGTTTTAGATCTCCCTTCTGGAAGCGACGCTTGTGAGCAAGAATTAGGATTGATGAGCATTGCCGAAAATAGTGCTGTAAATGCCTGGGGCCCTAATGATAAAGCTGGTCAAAATGTTTCTGGTGTAGATGAAACCAATGAGTTCTCAAGTGTGGATAAATCAATTTGGTATGGATCACCTTCAATGCCTCACATTATGGACCAACCGATCACTATGGATGCAACTTCACCCAAGTTGCACTATCCTGGAACAAAAGGTCCTGAACTCGACATCGAAGATGATCTCTACGAGAGTTTGAATATGGATGAAGATAGTTTGAATATTGAAAACTATGAAGAACTATTTGGTGTCTCTCTCAGTTATTCTGAAGAACTGCTAGAGAATGGTGGTATTGATAGCTTGTTCAGGATGAAAAACTTATCTGCCGCTAAATCTGGTTGCCCTGGTGGGGCGGCTGCAGAGGGGGCATCAGTCAGTTTTGTCAATAATGTGATGCAGCCTGCAAGCAGTAATGCAGCATCGGCAGATTCCGTGATGAGTGCGAAGACTGAACCAGTTCTTTGTTATAACAATAAGCAAGAGCACTCCAGCCTATCATTTTCTGGCATGACTGGAGAGAGTAGTGCAGGAGAACATCAAGACTGTGGAGCTTCATCAATGCTTCTAATGGGAGAGCCTCCATGGTGTTCTATGGCCACTGAGACTTCCTTCCAGTCATCTAATCGTAGTGATGCTGTAATGCGCTATAAGGAAAAGAAGAAAGCTCGAAAGTTTGAAAAGAAGGTGAGGTATGCCTCTCGCAAAGTTAGGGCTGATACTCGAAGACGTGTCAAGGGGCGCTTTGTCAAAGCCGGAGAAGCTTATGACTATGATCCATTGAGTCAAACCAGAAGCTACTGA 1224 44.12 MGYICDFCAQQRSIVYCRSDAAALCLSCDRNVHSANALSRRHSRTLLCDRCHSQAAFVRCPEENISLCQNCDYMGHSSSASISSRKRQPINCYSGCPTAAELSSIWSFVLDLPSGSDACEQELGLMSIAENSAVNAWGPNDKAGQNVSGVDETNEFSSVDKSIWYGSPSMPHIMDQPITMDATSPKLHYPGTKGPELDIEDDLYESLNMDEDSLNIENYEELFGVSLSYSEELLENGGIDSLFRMKNLSAAKSGCPGGAAAEGASVSFVNNVMQPASSNAASADSVMSAKTEPVLCYNNKQEHSSLSFSGMTGESSAGEHQDCGASSMLLMGEPPWCSMATETSFQSSNRSDAVMRYKEKKKARKFEKKVRYASRKVRADTRRRVKGRFVKAGEAYDYDPLSQTRSY 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4152901 4158710 - PI0019547.4 Cmetu01g0155 345429

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g0155 407 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Cmetu01g0155 407 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cmetu01g0155 407 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 395 - -
Cmetu01g0155 407 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cmetu01g0155 407 ProSiteProfiles CCT domain profile. 350 392 IPR010402 GO:0005515
Cmetu01g0155 407 CDD Bbox1_BBX-like 4 47 - -
Cmetu01g0155 407 Pfam CCT motif 350 392 IPR010402 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g0155 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g0155 Cmetu-Chr1:4152901 Cmetu10g0985 Cmetu-Chr10:20643174 1.70E-13 dispersed
Cmetu12g1238 Cmetu-Chr12:24539398 Cmetu01g0155 Cmetu-Chr1:4152901 3.10E-06 dispersed
Cmetu07g0254 Cmetu-Chr7:2392120 Cmetu01g0155 Cmetu-Chr1:4152901 1.10E-22 transposed
Cmetu11g0794 Cmetu-Chr11:23509535 Cmetu01g0155 Cmetu-Chr1:4152901 9.70E-38 transposed
Cmetu01g0155 Cmetu-Chr1:4152901 Cmetu11g0233 Cmetu-Chr11:18521442 1.30E-122 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu03g0258 . 6 337 C2C2-CO-like Transcription Factor Family AT5G15850 50.9 4.5e-42 169.1
Cmetu03g0258 . 1 337 C2C2-CO-like Transcription Factor Family AT5G24930 61.4 8.4e-84 307.8
Cmetu02g0351 . 20 375 C2C2-CO-like Transcription Factor Family AT5G24930 50.5 1.3e-57 220.7
Cmetu02g0351 . 5 375 C2C2-CO-like Transcription Factor Family AT5G57660 53.4 5.2e-70 261.9
Cmetu03g0258 . 2 337 C2C2-CO-like Transcription Factor Family AT5G57660 50.1 3.4e-53 206.1
Cmetu11g0233 . 97 510 C2C2-CO-like Transcription Factor Family AT3G07650 54.9 2.5e-91 332.8
Cmetu01g0155 . 1 407 C2C2-CO-like Transcription Factor Family AT3G07650 54.0 2.6e-88 322.8
Cmetu11g0233 . 97 510 C2C2-CO-like Transcription Factor Family AT5G48250 55.7 6.2e-90 328.2
Cmetu01g0155 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 55.2 3.2e-86 315.8
Cmetu11g0233 . 97 510 C2C2-CO-like Transcription Factor Family AT5G48250 55.7 6.2e-90 328.2
Cmetu01g0155 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 55.2 3.2e-86 315.8
Cmetu01g0740 . 1 206 C2C2-CO-like Transcription Factor Family AT1G75540 53.8 6.8e-48 188.3
Cmetu11g0516 . 1 175 C2C2-CO-like Transcription Factor Family AT1G75540 54.0 6.3e-46 181.8
Cmetu07g0164 . 1 297 C2C2-CO-like Transcription Factor Family AT1G78600 50.5 3.9e-77 285.4
Cmetu07g1596 . 1 185 C2C2-CO-like Transcription Factor Family AT2G21320 61.1 1.0e-55 213.4
Cmetu04g0320 . 1 117 C2C2-CO-like Transcription Factor Family AT2G21320 76.9 6.4e-50 194.1
Cmetu07g1596 . 1 186 C2C2-CO-like Transcription Factor Family AT4G38960 62.9 2.6e-57 218.8
Cmetu04g0320 . 1 110 C2C2-CO-like Transcription Factor Family AT4G38960 80.9 2.0e-49 192.6
Cmetu01g0740 . 1 204 C2C2-CO-like Transcription Factor Family AT4G39070 57.5 1.9e-52 203.0
Cmetu03g1194 . 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 52.9 6.5e-48 188.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000824 1 8 2 4 3 2 4 2 2 2 1 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 18 2 1 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7215 PF06203 CCT 2.70E-16 CL0281 Cmetu TF