Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g0195 ATGCCGTCTGTCTATGGAGCTCGTTTGACCACTTTTGAAGACTCTGAGAAGGAAAGCGAGTATGGATATGTCCGGAAGGTATCTGGACCAGTCGTCGTGGCAGATGGCATGGGAGGTGCAGCCATGTATGAATTGGTTCGTGTTGGTCATGATAATCTGATTGGTGAAATCATTAGGTTAGAAGGAGATTCTGCCACTATTCAGGTTTATGAGGAAACTGCTGGTTTGATGGTGAATGACCCTGTTTTACGTACTCATAAACCTTTGTCAGTGGAGTTAGGACCTGGAATACTGGGAAATATATTTGATGGCATTCAGAGGCCGTTAAAAACAATTGCAAAAAGATCGGGAGATGTCTACATTCCTCGTGGTGTTGCTGTCCCGGCACTGGACAAAGACATACTTTGGGATTTTCAACCCAAAAAACTAGGTGAGGGCGACGTAGTGACAGGTGGAGACTTGTATGCTACTGTCTTCGAGAATAGTCTAATGGAGCACCACATTGCACTTCCTCCTGATGCTATGGGACAAATTACCTATATTGCAGAGCCTGGTCAATATTCATTGAAGGATACTGTTCTAGAGCTCGAGTTTCAAGGTGTTAAAAAGCAATTCACCATGCTTCAGACTTGGCCTGTGCGTACTCCTAGACCAGTTGCATCGAAGCTTGCAGCTGATACCCCTCTTTTGACTGGGCAGCGTGTTCTTGATGCACTTTTCCCTTCCGTTCTTGGTGGAACATGTGCCATTCCTGGAGCATTTGGTTGTGGAAAAACAGTCATTAGTCAAGCTCTCTCTAAATATTCAAATTCTGATACTGTGGTGTATGTTGGTTGTGGAGAGAGAGGAAATGAAATGGCTGAAGTTCTTATGGATTTTCCTCAATTGACAATGACCTTGCCGGATGGTCGTGAAGAATCTGTCATGAAGCGTACCACTCTTGTGGCTAACACTTCTAATATGCCTGTGGCTGCTCGTGAAGCTTCAATTTATACTGGAATTACTTTGGCCGAATACTTCAGAGATATGGGATACAATGTAAGTATGATGGCAGATTCAACATCTCGATGGGCAGAAGCACTACGTGAAATATCTGGACGACTGGCAGAAATGCCTGCAGATAGTGGATATCCTGCTTACCTAGCGGCACGTTTAGCCTCTTTCTATGAGCGTGCTGGTAAAGTGAAATGTCTTGGTGGGCCAGAACGAACTGGCAGTGTTACCATTGTTGGTGCAGTTTCTCCACCTGGAGGAGATTTCTCTGATCCAGTTACATCTGCTACCCTCAGTATTGTCCAGGTTTTCTGGGGTCTAGATAAGAAGCTTGCCCAGAGGAAGCACTTCCCTTCCGTGAACTGGCTAATTTCATACTCAAAATACTCCTCTGCGTTGGAGTCTTTCTACGAGAAGTTCGATCCAGATTTTATTAGCATCAGAACAAAGGCTCGTGAAGTCCTTCAGAGGGAAGATGACCTCAATGAAATTGTCCAACTTGTGGGGAAGGATGCCTTAGCCGAAGGAGATAAGATTACCTTAGAGACTGCAAAGCTTTTGAGGGAGGACTATCTTGCTCAGAATGCATTTACTCCGTATGATAAATTCTGCCCATTCTACAAGTCAGTCTGGATGATGCGTAATATCATTCATTTCTACAATTTGGCTAATCAGGCAGTAGAGAGGGGAGCGGGTATGGATGGCCAAAAGATAACATACAGTTTGATTAAGCATCGGTTGGGAGATCTATTCTATCGCCTGGTGTCTCAAAAGTTCGAAGATCCAGCTGAAGGAGAAGCAGCTCTCATCGAAAAATTCAAGAAGCTACACGAAGATCTGACAAACGGTTTCCGTGCTCTCGAGGACGAAACTCGATAG 1872 44.6 MPSVYGARLTTFEDSEKESEYGYVRKVSGPVVVADGMGGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAKRSGDVYIPRGVAVPALDKDILWDFQPKKLGEGDVVTGGDLYATVFENSLMEHHIALPPDAMGQITYIAEPGQYSLKDTVLELEFQGVKKQFTMLQTWPVRTPRPVASKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITLAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSSALESFYEKFDPDFISIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVERGAGMDGQKITYSLIKHRLGDLFYRLVSQKFEDPAEGEAALIEKFKKLHEDLTNGFRALEDETR 623
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 27950156 27955411 + PI0004932.1 Cmetu01g0195 345469

Annotation


Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g0195 623 FunFam V-type proton ATPase catalytic subunit A 192 457 - -
Cmetu01g0195 623 Gene3D - 459 611 IPR024034 -
Cmetu01g0195 623 CDD ATP-synt_V_A-type_alpha_N 21 87 - -
Cmetu01g0195 623 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 471 553 - -
Cmetu01g0195 623 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 232 458 IPR000194 GO:0005524
Cmetu01g0195 623 Gene3D - 20 89 IPR023366 -
Cmetu01g0195 623 FunFam V-type proton ATPase catalytic subunit A 459 612 - -
Cmetu01g0195 623 Pfam ATPsynthase alpha/beta subunit N-term extension 102 223 IPR031686 -
Cmetu01g0195 623 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 17 89 IPR036121 GO:0046034|GO:1902600
Cmetu01g0195 623 PANTHER V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A 10 621 IPR022878 GO:0046034|GO:0046961
Cmetu01g0195 623 Coils Coil 601 621 - -
Cmetu01g0195 623 FunFam V-type proton ATPase catalytic subunit A 20 89 - -
Cmetu01g0195 623 Gene3D - 91 457 IPR027417 -
Cmetu01g0195 623 CDD ATP-synt_V_A-type_alpha_C 475 581 - -
Cmetu01g0195 623 Pfam ATP synthase alpha/beta family, beta-barrel domain 25 85 IPR004100 GO:0046034|GO:1902600
Cmetu01g0195 623 Gene3D - 134 205 - -
Cmetu01g0195 623 CDD V_A-ATPase_A 88 460 - -
Cmetu01g0195 623 ProSitePatterns ATP synthase alpha and beta subunits signature. 449 458 IPR020003 GO:0005524
Cmetu01g0195 623 NCBIfam V-type ATPase subunit A 20 611 IPR005725 GO:0016887|GO:0033180|GO:0046961|GO:1902600
Cmetu01g0195 623 Hamap V-type ATP synthase alpha chain [atpA]. 19 622 IPR022878 GO:0046034|GO:0046961
Cmetu01g0195 623 FunFam V-type proton ATPase catalytic subunit A 134 205 - -
Cmetu01g0195 623 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 463 IPR027417 -
       

Pathway


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g0195 K02145 - - csv:101216234 1215.68
       

Syn-Families


Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu03g1891 . 1 998 Primary Pumps ATPases(2) AT1G10130 82.5 0.0e+00 1618.2
Cmetu11g1679 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.3 0.0e+00 1342.8
Cmetu03g1529 . 1 803 Primary Pumps ATPases(2) AT2G28520 62.9 4.5e-295 1010.7
Cmetu01g1260 . 10 813 Primary Pumps ATPases(2) AT2G28520 63.2 1.3e-294 1009.2
Cmetu01g1260 . 7 818 Primary Pumps ATPases(2) AT2G21410 75.6 0.0e+00 1226.8
Cmetu03g1529 . 1 808 Primary Pumps ATPases(2) AT2G21410 73.1 0.0e+00 1194.9
Cmetu11g1679 . 9 818 Primary Pumps ATPases(2) AT2G21410 62.3 3.7e-297 1017.7
Cmetu01g1260 . 8 818 Primary Pumps ATPases(2) AT4G39080 76.9 0.0e+00 1233.0
Cmetu03g1529 . 1 808 Primary Pumps ATPases(2) AT4G39080 73.8 0.0e+00 1188.7
Cmetu11g1679 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.3 3.1e-296 1014.6
Cmetu03g2002 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.5e-60 229.2
Cmetu03g1404 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.5e-60 229.2
Cmetu07g1091 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.5e-60 229.2
Cmetu03g1404 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 8.8e-67 250.4
Cmetu07g1091 . 1 165 Primary Pumps ATPases(2) AT1G75630 81.0 1.5e-66 249.6
Cmetu03g2002 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 2.0e-66 249.2
Cmetu03g1404 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 1.4e-73 272.7
Cmetu07g1091 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 1.4e-73 272.7
Cmetu03g2002 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 2.3e-73 271.9
Cmetu07g1091 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.7e-52 202.2
Cmetu03g1404 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 3.7e-52 201.1
Cmetu03g2002 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 6.4e-52 200.3
Cmetu03g1752 . 4 180 Primary Pumps ATPases(2) AT2G25610 81.9 1.5e-70 263.1
Cmetu04g1520 . 1 175 Primary Pumps ATPases(2) AT2G25610 83.4 2.5e-70 262.3
Cmetu03g2002 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 4.2e-60 227.6
Cmetu03g1404 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 4.2e-60 227.6
Cmetu07g1091 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 4.2e-60 227.6
Cmetu03g1752 . 1 180 Primary Pumps ATPases(2) AT4G32530 75.2 1.2e-74 276.6
Cmetu04g1520 . 6 175 Primary Pumps ATPases(2) AT4G32530 77.5 8.6e-73 270.4
Cmetu12g0878 . 1 1065 Primary Pumps ATPases(2) AT1G07810 80.7 0.0e+00 1672.1
Cmetu12g0878 . 1 1065 Primary Pumps ATPases(2) AT1G07670 81.0 0.0e+00 1681.0
Cmetu03g1891 . 1 998 Primary Pumps ATPases(2) AT1G10130 82.5 0.0e+00 1618.2
Cmetu12g0878 . 22 1046 Primary Pumps ATPases(2) AT4G00900 65.5 0.0e+00 1318.5
Cmetu02g2076 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.9 1.4e-57 219.2
Cmetu01g2368 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.1 2.8e-268 921.0
Cmetu09g1575 . 1 376 Primary Pumps ATPases(2) AT1G12840 83.5 9.0e-182 633.3
Cmetu05g1761 . 1 261 Primary Pumps ATPases(2) AT3G58730 82.4 1.4e-117 419.5
Cmetu04g0830 . 3 454 Primary Pumps ATPases(2) AT3G42050 80.1 5.0e-208 720.7
Cmetu03g1404 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 1.4e-73 272.7
Cmetu07g1091 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 1.4e-73 272.7
Cmetu03g2002 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 2.3e-73 271.9
Cmetu01g2368 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.3 4.4e-269 923.7
Cmetu06g0838 . 1 176 Primary Pumps ATPases(2) AT1G64200 77.0 7.1e-66 247.3
Cmetu01g2368 . 9 488 Primary Pumps ATPases(2) AT1G20260 95.8 5.8e-266 913.3
Cmetu11g1679 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.3 0.0e+00 1342.8
Cmetu03g1529 . 1 803 Primary Pumps ATPases(2) AT2G28520 62.9 4.5e-295 1010.7
Cmetu01g1260 . 10 813 Primary Pumps ATPases(2) AT2G28520 63.2 1.3e-294 1009.2
Cmetu04g2429 . 1 351 Primary Pumps ATPases(2) AT3G28715 92.0 6.7e-192 666.8
Cmetu06g0838 . 1 229 Primary Pumps ATPases(2) AT4G11150 77.8 2.2e-90 328.9
Cmetu01g0195 . 1 623 Primary Pumps ATPases(2) AT1G78900 93.1 0.0e+00 1171.0
Cmetu01g2368 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.1 2.8e-268 921.0
Cmetu01g2368 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.3 4.4e-269 923.7
Cmetu01g2368 . 9 488 Primary Pumps ATPases(2) AT1G20260 95.8 5.8e-266 913.3
Cmetu09g1575 . 1 376 Primary Pumps ATPases(2) AT1G12840 83.5 9.0e-182 633.3
Cmetu05g1761 . 1 261 Primary Pumps ATPases(2) AT3G58730 82.4 1.4e-117 419.5
Cmetu06g0838 . 1 229 Primary Pumps ATPases(2) AT4G11150 77.8 2.2e-90 328.9
Cmetu06g0838 . 1 223 Primary Pumps ATPases(2) AT3G08560 69.5 5.4e-76 281.2
Cmetu06g0838 . 1 176 Primary Pumps ATPases(2) AT1G64200 77.0 7.1e-66 247.3
Cmetu02g2076 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.9 1.4e-57 219.2
Cmetu04g0830 . 3 454 Primary Pumps ATPases(2) AT3G42050 80.1 5.0e-208 720.7
Cmetu11g1679 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.3 0.0e+00 1342.8
Cmetu03g1529 . 1 803 Primary Pumps ATPases(2) AT2G28520 62.9 4.5e-295 1010.7
Cmetu01g1260 . 10 813 Primary Pumps ATPases(2) AT2G28520 63.2 1.3e-294 1009.2
Cmetu01g1260 . 7 818 Primary Pumps ATPases(2) AT2G21410 75.6 0.0e+00 1226.8
Cmetu03g1529 . 1 808 Primary Pumps ATPases(2) AT2G21410 73.1 0.0e+00 1194.9
Cmetu11g1679 . 9 818 Primary Pumps ATPases(2) AT2G21410 62.3 3.7e-297 1017.7
Cmetu01g1260 . 8 818 Primary Pumps ATPases(2) AT4G39080 76.9 0.0e+00 1233.0
Cmetu03g1529 . 1 808 Primary Pumps ATPases(2) AT4G39080 73.8 0.0e+00 1188.7
Cmetu11g1679 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.3 3.1e-296 1014.6
Cmetu03g2002 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.5e-60 229.2
Cmetu03g1404 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.5e-60 229.2
Cmetu07g1091 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.5e-60 229.2
Cmetu07g1091 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.7e-52 202.2
Cmetu03g1404 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 3.7e-52 201.1
Cmetu03g2002 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 6.4e-52 200.3
Cmetu03g2002 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 4.2e-60 227.6
Cmetu03g1404 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 4.2e-60 227.6
Cmetu07g1091 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 4.2e-60 227.6
Cmetu03g1404 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 8.8e-67 250.4
Cmetu07g1091 . 1 165 Primary Pumps ATPases(2) AT1G75630 81.0 1.5e-66 249.6
Cmetu03g2002 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 2.0e-66 249.2
Cmetu03g1404 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 1.4e-73 272.7
Cmetu07g1091 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 1.4e-73 272.7
Cmetu03g2002 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 2.3e-73 271.9
Cmetu03g1752 . 1 180 Primary Pumps ATPases(2) AT4G32530 75.2 1.2e-74 276.6
Cmetu04g1520 . 6 175 Primary Pumps ATPases(2) AT4G32530 77.5 8.6e-73 270.4
Cmetu03g1752 . 4 180 Primary Pumps ATPases(2) AT2G25610 81.9 1.5e-70 263.1
Cmetu04g1520 . 1 175 Primary Pumps ATPases(2) AT2G25610 83.4 2.5e-70 262.3
Cmetu04g2429 . 1 351 Primary Pumps ATPases(2) AT3G28710 94.3 5.8e-199 690.3
Cmetu04g2429 . 1 351 Primary Pumps ATPases(2) AT3G28715 92.0 6.7e-192 666.8
Cmetu12g0878 . 1 1065 Primary Pumps ATPases(2) AT1G07810 80.7 0.0e+00 1672.1
Cmetu12g0878 . 22 1046 Primary Pumps ATPases(2) AT4G00900 65.5 0.0e+00 1318.5
Cmetu03g1891 . 1 998 Primary Pumps ATPases(2) AT1G10130 82.5 0.0e+00 1618.2
Cmetu12g0878 . 1 1065 Primary Pumps ATPases(2) AT1G07670 81.0 0.0e+00 1681.0
       

Syn-Orthogroups


Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006487 2 1 2 1 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 0 1 1 1 1 1 1 1 2 37