Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g0203 ATGGTTTTTCATTCTCAAGTTCCTACTAGATATACTTGTAGGCTTCTTGCAATCCCTTATGGGAGTGTTCCTGAAGATAAATCTAAGAAGGATAATCCAGAGGATCAACAGAGATATCCCTTTCCACAATTAAATTCTTCTGGGCGTTTAGAGGTCCAGGTTTTGTCAAATCCTAGTAAAGATCAGTTTTGTAGGACTCTCGAATCGTATAAACCAAACATTGTTTACTTACAAGGAGAACAACTCGAGAATGATGAAGTTGGTTCTTTAGTATGGGGAGGTGTTGATTTGTCCACTGTAGAAGCGATAAGTGGGCTCTTTAGTTATCCATTGCCCACCACTGTATATTTGGATATAGCAAAGGGAGATGAAGTAGCTGATGCACTTCACTCCAAGGGTATTCCTTATATCATATACTGGAGAAGCACATTTACTTGTTATGCAGCATGTCATTTCCGCAATGCATTCCTTTCGGTTCTTCAGAGTTCATCTGCTCACACATGGGACGCATTTCAACTTGCACACGCTTCATTTAGGATGTATTGCTTTGGAAACAACTTTGTTCTTCCTAGCAGTAGTCATAAAGAAGTTAGTGAAGATCTGGGTCCACACCTTCTAGGGGAACGCTTGAAAATAAATGTCGAACCCCTAGAGAAAGAGGTAGCTGATGATGAAGAAAGTTCATCAGAAGGAATCTCCGTGAACATTCTTGATAATGATGTTGAAATGAGATTTCTTGTATGTGGAGAACCAGGCTCATTGGATGCTTATGTATTAGAAGCTCTGGAGGATGGTCTTAACGCCCTCTTGGACATTGAAATTCGGGGGAGCAAACTTCACGGCAAGTTCAGTGCCCCTCCTCCACCTCTTCAGGCAGGAACACTCTCTAATGGTGTTGTGACCATGCGCTGTGATTTATCTACATGCACTTTTGCCCACATTTCACTGTTGGTATCAGGTAGTGCACAAGCTTGTTTTGATGATCAGCTATTTGAAAATTATATAAAGAATGAGATTATAGACAGAAGCGAACTAGTGCAGACACTAATCGATGGTGAAGGAAGCAAACACTTATCTCAACCACGTAAATCTACTTCAATTGCTTGTGGGTCAACGGTTTTTGAAGTTAGCTTGAAGGTCCCTTCATGGGCATCTCAGATTTTGAGGCAGTTAGCCCCTGATGTTTCTTATCGAAGTTTAGTGGGACTGGGCATTGCCAGCATCCAGGGTTTGTCTGTTGCTTCTTTTGAGAAGGATGATGCTGAGCGCCTCCTTTTCTTCTGTTCAAGGAAGGAAAAAGATTTATTTCTGAGCAATTTAACTGATAGCACACTCCCAAGCTGGTTGAAGCCACCTGCTCCTAGAAAGAGATCGAAATATATGAAAGATACAAGCCTTGGTTCTCATGATATTATTGAAAATCTGAAGGTATCGCCTGATCGAAGAATACATAGTGCAAACATGGAAATAGGATCAAGGAATGGTTTTAGCACTCCCATGTTTCCACTTCCAAGAAGGAGAGGCATGAAAATTGCTGCAATGAGGCCCATTCCTCATGTTAATCGCCATAAAATGATCACTTTTCATGGAATATCTGAGACGGGCGGGCACAATGGAAGCCTCCTTAAAGCTAGTGTTCCTTCTAGTAATCCCACAAAGCATGTGACTGTAGGTTCAGCTTCAGTTTTCCAACAAAAAATATTTCCAAGTGCGTCTCAATATAAACAAATCATTCCCATGAATCCACTACCTTTGAAGAAGCACGGTTGTGGCAGAAGTCATATACAGGCTTGCTTTGAGGAGGAATTTTTGAAGGATTTGCTGCAGTTTTTAGCTCTTCGAGGTCACAGTCGACTTATTCCTCCAGGTGGGCTTGCTGAGTTTCCAGATGCTATACTCAATGGAAAGCGTCTTGACCTTTACAACCTGTACAAGGAGGTGGTTTCAAGAGGTGGCTTCCGTGTTGGAAATGGCATTAATTGGAAAGGACAGATCTTCTCAAAGATGCGCAATTACACCATGACCAATAGAATGACTGGTGTTGGAAACACGCTTAAAAGACATTACGAGACTTATCTTCTAGAGTATGAATTGGCACATGAAGATGTAGATGGTGAATGTTGCCTGTTATGCCACAGTAGTGCAGCAGGGGACTGGGTGAACTGTGGCATTTGTGGAGAGTGGGCTCACTTCGGTTGCGATAGAAGGCAGGGTCTCGGTGCATTTAAGGATTATGCAAAAACTGATGGCTTAGAATACATATGTCCACACTGTAGTGTTGCTAATTATAAGAAGAAGAAAGTTGCAAATGGTTTATCTCCAGGCTTCTCCTCAAGACCAATATGA 2346 41.82 MVFHSQVPTRYTCRLLAIPYGSVPEDKSKKDNPEDQQRYPFPQLNSSGRLEVQVLSNPSKDQFCRTLESYKPNIVYLQGEQLENDEVGSLVWGGVDLSTVEAISGLFSYPLPTTVYLDIAKGDEVADALHSKGIPYIIYWRSTFTCYAACHFRNAFLSVLQSSSAHTWDAFQLAHASFRMYCFGNNFVLPSSSHKEVSEDLGPHLLGERLKINVEPLEKEVADDEESSSEGISVNILDNDVEMRFLVCGEPGSLDAYVLEALEDGLNALLDIEIRGSKLHGKFSAPPPPLQAGTLSNGVVTMRCDLSTCTFAHISLLVSGSAQACFDDQLFENYIKNEIIDRSELVQTLIDGEGSKHLSQPRKSTSIACGSTVFEVSLKVPSWASQILRQLAPDVSYRSLVGLGIASIQGLSVASFEKDDAERLLFFCSRKEKDLFLSNLTDSTLPSWLKPPAPRKRSKYMKDTSLGSHDIIENLKVSPDRRIHSANMEIGSRNGFSTPMFPLPRRRGMKIAAMRPIPHVNRHKMITFHGISETGGHNGSLLKASVPSSNPTKHVTVGSASVFQQKIFPSASQYKQIIPMNPLPLKKHGCGRSHIQACFEEEFLKDLLQFLALRGHSRLIPPGGLAEFPDAILNGKRLDLYNLYKEVVSRGGFRVGNGINWKGQIFSKMRNYTMTNRMTGVGNTLKRHYETYLLEYELAHEDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVANYKKKKVANGLSPGFSSRPI 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28159804 28166954 + PI0003994.3 Cmetu01g0203 345477

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g0203 781 ProSiteProfiles ARID domain profile. 597 701 IPR001606 GO:0003677
Cmetu01g0203 781 CDD PHD_ARID4_like 707 758 - -
Cmetu01g0203 781 Gene3D - 593 700 IPR036431 GO:0003677
Cmetu01g0203 781 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 701 764 IPR013083 -
Cmetu01g0203 781 SMART ARID_2 594 697 - -
Cmetu01g0203 781 SMART bright_3 598 702 IPR001606 GO:0003677
Cmetu01g0203 781 Pfam ARID/BRIGHT DNA binding domain 601 697 IPR001606 GO:0003677
Cmetu01g0203 781 SUPERFAMILY FYVE/PHD zinc finger 693 761 IPR011011 -
Cmetu01g0203 781 CDD ARID 600 697 - -
Cmetu01g0203 781 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 773 IPR042293 -
Cmetu01g0203 781 MobiDBLite consensus disorder prediction 24 43 - -
Cmetu01g0203 781 SUPERFAMILY ARID-like 600 712 IPR036431 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g0203 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g0203 Cmetu-Chr1:28159804 Cmetu01g1064 Cmetu-Chr1:28204608 0.00E+00 proximal
Cmetu01g0203 Cmetu-Chr1:28159804 Cmetu04g1213 Cmetu-Chr4:15011742 8.40E-299 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu05g1114 . 19 384 ARID Transcription Factor Family AT1G04880 55.9 1.1e-104 377.5
Cmetu06g1465 . 208 477 ARID Transcription Factor Family AT1G20910 61.0 2.5e-89 326.2
Cmetu07g1207 . 16 310 ARID Transcription Factor Family AT1G76110 68.5 2.1e-113 406.0
Cmetu06g1465 . 187 507 ARID Transcription Factor Family AT1G76510 59.5 7.6e-108 387.9
Cmetu04g1213 . 1 770 ARID Transcription Factor Family AT3G43240 59.7 3.6e-267 917.9
Cmetu01g0203 . 2 771 ARID Transcription Factor Family AT3G43240 57.5 2.1e-259 892.1
Cmetu01g1064 . 32 771 ARID Transcription Factor Family AT3G43240 59.1 3.6e-259 891.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001323 3 5 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 9 3 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7218 PF01388 ARID 2.40E-15 CL0123 Cmetu TR