Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g0268 ATGGTGAGGGAACAACGTGTTGAATCGTTTTACACTAAACTTCGTGACTCTGTCGCGGCTTCTTCTTTGTCTCCTCTTCTTATTTTTCCTTCCACTTCTGATGTAGACTCACTCTGTGCCTTGAAAATTATTTTTAGAGTTCTTGAATCTGATTCTGTTCGATACGCTTGTTATCCTGTGTCTTCTTTTCAAGAAATTCATAAATATGCTGGCCCTAGTTTGACTTCCTTGTCTGCTGATCCGATTTCGATTCTTTTGATTAATTGGGGATGTCATCGAGATCTTAGGAAGGTTTTGAGTTTAGGTCCGGCTGCTCGTGTGTTTGTTGTTGATAGTCATCGCCCGATTCATCTTCATAATCTGAGTAGTGAGAATGAACAAGTGGTTGTGCTTTATACCAAAGATGACGAGCTCCAGGCTGATTTGGCTTATGACTTTGATGTCTCTGCCTTGGCAAATGCTAGCGATTTGAACAGTGATGATGAGATTGATGATGTATCGGATAGCGATGACAATGATAGCGAAAGTGATGAAGAAGGCAGGCGTGGGTCGAGGAAGAGGAGGAGAGTTGATAAGGAAAATGAAGAGGATCCTGTTCAGCTTTATAGGAAATTGAAAAGGGGATACTATCAAATGGGTACCTTCCATGGTAGGCCGTCAGGGTGTCTGATGTATGATCTGTCACATTCTTTGAGGAAGAACACGAATGAATTACTATGGCTGGCTTGTGTGTCTTTAACAGATCAGTTTGTACATGAAAGATTGACGGATGAGAGGTATCAAGCTGGGGTTATGGAGCTCGAACAACACATTAACAGTTCAGGGAACTTAAATGCTGTAAATTCTGTTACTCTTAAAGATGGCACCAAGATCCGTGCCCCTGATGCATCTAGAATTACTTATGATGATGAACCCAGATTAATGCTCTTGCAGGAGTGGAATTTATTTGATTCAATGCTTTGTTCTTCATATATTGCAACCAAGTTAAAGACATGGAGTGACAATGGAATGAAGAAGCTCAAATTGCTTCTAGCACGTATGGGGTTTGCACTTGTGGACTGCCAACAAAAGTTCCAATACATGAATATCGAAGTGAAACGAAAGATGAAGGACGAATTTGAGCGATACCTTCCTGAATACGGCCTAACCGATTTCTACTACAGAAGTTTCTTGAGGTTACATGGTTATAGCTCAAAAGTGTCAGCAGCAGATGTGGTATATGGGGTCACTGCATTGCTCGAGTCCTTCGTCAAATCAGATGGTTCTAGTGCTTCCAAGCAGTTCGGAGTGGCTTATGATGCATTGTCATTGAACAATCTTGATAAGCTCAAAGCTGGAATGCAGCAGGCAATCAAAGTCCAGAGATCAATTCTTAGACAAGGGAGCTCTGCAATTACAAAGAGTGGCTGCATAAGAAGTGGGAGAAAATTTCGTTGGGTGAAGCTTGAAGATTCTGTAGACACCAAATTGTTGGGATATCCTCAAGCACTCACAAAATTTTGCTACTTTATAATGGATGCTTTGAAAGAGAGAGGAGCAAGAATGAAGCCTTTGCTATGTGCTTGCTTATCTCAAGAGCCCAACAAAGTACTGATTGTTGGAGTTTGTGGGAAGCCTAGACTCGGAGCATCCCAAGGCAATGCATTTGGGAGAGCTTTTCGAGACGCGGCGGAGGAAATTAGCTCAGAGTTTTTCCACGAGATGTTTGAATCTTCATGGATTCTTCTTGAAAAAACTTCAGTGAACTCTTTCATGGTTAGATTGACTCAGAAGCTGTAA 1779 41.6 MVREQRVESFYTKLRDSVAASSLSPLLIFPSTSDVDSLCALKIIFRVLESDSVRYACYPVSSFQEIHKYAGPSLTSLSADPISILLINWGCHRDLRKVLSLGPAARVFVVDSHRPIHLHNLSSENEQVVVLYTKDDELQADLAYDFDVSALANASDLNSDDEIDDVSDSDDNDSESDEEGRRGSRKRRRVDKENEEDPVQLYRKLKRGYYQMGTFHGRPSGCLMYDLSHSLRKNTNELLWLACVSLTDQFVHERLTDERYQAGVMELEQHINSSGNLNAVNSVTLKDGTKIRAPDASRITYDDEPRLMLLQEWNLFDSMLCSSYIATKLKTWSDNGMKKLKLLLARMGFALVDCQQKFQYMNIEVKRKMKDEFERYLPEYGLTDFYYRSFLRLHGYSSKVSAADVVYGVTALLESFVKSDGSSASKQFGVAYDALSLNNLDKLKAGMQQAIKVQRSILRQGSSAITKSGCIRSGRKFRWVKLEDSVDTKLLGYPQALTKFCYFIMDALKERGARMKPLLCACLSQEPNKVLIVGVCGKPRLGASQGNAFGRAFRDAAEEISSEFFHEMFESSWILLEKTSVNSFMVRLTQKL 592
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21179945 21181910 + PI0029140.1 Cmetu01g0268 345542

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g0268 592 PANTHER CDC45-RELATED PROTEIN 1 591 IPR003874 GO:0006270
Cmetu01g0268 592 MobiDBLite consensus disorder prediction 176 198 - -
Cmetu01g0268 592 MobiDBLite consensus disorder prediction 159 175 - -
Cmetu01g0268 592 MobiDBLite consensus disorder prediction 159 198 - -
Cmetu01g0268 592 Pfam CDC45-like protein 419 591 IPR003874 GO:0006270
Cmetu01g0268 592 Pfam CDC45-like protein 27 415 IPR003874 GO:0006270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g0268 K06628 - - csv:101221761 1092.8
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu09g1973 . 106 796 Core DNA Replication Machinery Family AT4G14700 66.8 7.2e-269 923.7
Cmetu09g1273 . 105 608 Core DNA Replication Machinery Family AT4G14700 59.5 4.8e-172 602.1
Cmetu02g0756 . 91 494 Core DNA Replication Machinery Family AT4G14700 68.4 4.1e-163 572.4
Cmetu09g1323 . 106 266 Core DNA Replication Machinery Family AT4G14700 65.9 2.1e-58 224.6
Cmetu09g0384 . 6 137 Core DNA Replication Machinery Family AT4G14700 73.7 1.9e-51 201.4
Cmetu09g1973 . 72 796 Core DNA Replication Machinery Family AT4G12620 67.1 1.0e-278 956.4
Cmetu09g1273 . 71 608 Core DNA Replication Machinery Family AT4G12620 60.0 4.8e-180 628.6
Cmetu02g0756 . 89 494 Core DNA Replication Machinery Family AT4G12620 68.7 1.1e-163 574.3
Cmetu09g1323 . 72 266 Core DNA Replication Machinery Family AT4G12620 61.8 1.5e-64 245.0
Cmetu09g0384 . 6 137 Core DNA Replication Machinery Family AT4G12620 73.7 7.2e-51 199.5
Cmetu03g0945 . 2 360 Core DNA Replication Machinery Family AT2G37560 65.5 2.7e-140 495.4
Cmetu10g0487 . 2 351 Core DNA Replication Machinery Family AT2G01120 65.0 1.6e-131 466.5
Cmetu11g0818 . 3 536 Core DNA Replication Machinery Family AT4G29910 59.7 4.8e-179 624.8
Cmetu05g1262 . 1 283 Core DNA Replication Machinery Family AT1G26840 64.0 3.8e-92 335.1
Cmetu01g1941 . 4 800 Core DNA Replication Machinery Family AT1G79150 59.6 1.1e-245 846.7
Cmetu04g0809 . 1 952 Core DNA Replication Machinery Family AT1G44900 72.9 0.0e+00 1307.4
Cmetu04g1329 . 1 554 Core DNA Replication Machinery Family AT5G46280 77.1 3.1e-250 861.3
Cmetu01g1320 . 1 844 Core DNA Replication Machinery Family AT2G16440 76.1 0.0e+00 1151.0
Cmetu05g1624 . 1 735 Core DNA Replication Machinery Family AT2G07690 78.4 0.0e+00 1113.6
Cmetu04g3110 . 68 896 Core DNA Replication Machinery Family AT5G44635 72.6 0.0e+00 1192.6
Cmetu01g2697 . 4 722 Core DNA Replication Machinery Family AT4G02060 85.0 0.0e+00 1217.6
Cmetu11g1143 . 12 504 Core DNA Replication Machinery Family AT2G29680 59.4 5.7e-163 571.2
Cmetu11g1143 . 22 465 Core DNA Replication Machinery Family AT1G07270 58.2 8.2e-140 494.2
Cmetu01g0268 . 1 592 Core DNA Replication Machinery Family AT3G25100 76.5 3.2e-258 887.9
Cmetu04g2866 . 12 770 Core DNA Replication Machinery Family AT3G09660 72.7 4.0e-314 1073.5
Cmetu01g0077 . 10 645 Core DNA Replication Machinery Family AT2G14050 77.7 6.5e-289 989.9
Cmetu11g2130 . 1 404 Core DNA Replication Machinery Family AT2G20980 56.3 2.5e-118 422.5
Cmetu01g2696 . 1 200 Core DNA Replication Machinery Family AT1G80190 67.8 7.9e-76 280.4
Cmetu07g0908 . 44 188 Core DNA Replication Machinery Family AT3G12530 72.4 1.6e-60 229.2
Cmetu03g0030 . 1 184 Core DNA Replication Machinery Family AT1G19080 67.4 3.9e-69 258.1
Cmetu03g0030 . 1 184 Core DNA Replication Machinery Family AT3G55490 67.4 3.9e-69 258.1
Cmetu06g0031 . 15 164 Core DNA Replication Machinery Family AT5G49010 66.0 2.4e-50 195.7
Cmetu11g1317 . 1 1546 Core DNA Replication Machinery Family AT5G67100 60.7 0.0e+00 1779.2
Cmetu12g1528 . 104 726 Core DNA Replication Machinery Family AT1G67630 61.8 1.7e-217 752.7
Cmetu11g0430 . 1 447 Core DNA Replication Machinery Family AT1G67320 65.1 5.1e-185 644.4
Cmetu09g0829 . 10 364 Core DNA Replication Machinery Family AT5G41880 63.3 8.9e-144 507.3
Cmetu08g0422 . 1 1048 Core DNA Replication Machinery Family AT5G63960 79.2 0.0e+00 1686.0
Cmetu04g0761 . 1 444 Core DNA Replication Machinery Family AT2G42120 75.0 4.9e-203 704.1
Cmetu11g0430 . 1 447 Core DNA Replication Machinery Family AT1G67320 65.1 5.1e-185 644.4
Cmetu09g1681 . 1 125 Core DNA Replication Machinery Family AT1G09815 60.8 2.6e-37 151.8
Cmetu11g2291 . 1 2101 Core DNA Replication Machinery Family AT1G08260 70.4 0.0e+00 2935.6
Cmetu09g1641 . 7 710 Core DNA Replication Machinery Family AT1G08260 76.1 0.0e+00 1131.7
Cmetu11g2291 . 25 2208 Core DNA Replication Machinery Family AT2G27120 67.1 0.0e+00 2906.3
Cmetu09g1641 . 29 710 Core DNA Replication Machinery Family AT2G27120 74.6 0.0e+00 1082.0
Cmetu09g1641 . 722 1215 Core DNA Replication Machinery Family AT2G27120 51.6 8.0e-134 476.5
Cmetu12g1449 . 1 258 Core DNA Replication Machinery Family AT5G22110 77.9 1.1e-121 434.1
Cmetu12g0662 . 7 218 Core DNA Replication Machinery Family AT5G22110 58.2 1.2e-56 218.0
Cmetu05g0121 . 1 927 Core DNA Replication Machinery Family AT5G22010 63.2 5.9e-304 1040.4
Cmetu06g1240 . 1 334 Core DNA Replication Machinery Family AT1G63160 91.0 6.1e-174 607.1
Cmetu08g0376 . 1 354 Core DNA Replication Machinery Family AT5G27740 85.3 3.0e-179 624.8
Cmetu07g2093 . 1 334 Core DNA Replication Machinery Family AT1G21690 81.8 2.7e-153 538.5
Cmetu03g1930 . 1 363 Core DNA Replication Machinery Family AT1G77470 75.8 1.6e-154 542.7
Cmetu05g1912 . 26 590 Core DNA Replication Machinery Family AT2G06510 66.3 3.4e-234 808.1
Cmetu06g1804 . 32 705 Core DNA Replication Machinery Family AT2G06510 50.7 1.3e-198 689.9
Cmetu02g1294 . 1 611 Core DNA Replication Machinery Family AT5G08020 66.7 7.1e-237 817.0
Cmetu06g1804 . 10 813 Core DNA Replication Machinery Family AT5G45400 52.2 1.0e-233 807.0
Cmetu02g1294 . 6 606 Core DNA Replication Machinery Family AT5G61000 65.3 7.1e-232 800.4
Cmetu06g1804 . 5 800 Core DNA Replication Machinery Family AT4G19130 53.8 6.4e-230 794.3
Cmetu02g0333 . 1 225 Core DNA Replication Machinery Family AT3G02920 50.2 1.4e-55 213.4
Cmetu02g1464 . 1 404 Core DNA Replication Machinery Family AT5G26680 82.5 1.4e-188 656.0
Cmetu06g2653 . 1 1103 Core DNA Replication Machinery Family AT1G08840 53.0 1.1e-301 1033.1
Cmetu07g2177 . 1 297 Core DNA Replication Machinery Family AT2G25100 67.0 4.1e-115 411.4
Cmetu11g1276 . 1 805 Core DNA Replication Machinery Family AT1G08130 65.6 9.7e-295 1009.6
Cmetu11g1276 . 205 805 Core DNA Replication Machinery Family AT1G49250 68.6 1.1e-240 829.7