Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g0289 ATGTTGGTTATTGTGTTGTTGTTTGTGTTATTAGCTTTCTTGTTTGTTCGCTCATGGGGTTGGCCAAAGGCAATGGAGGAGATTCCTGGGAATTTGGGTTGGCCAATTGTTGGTGAAAGCTTTTCTTTTATATCAGAGTTTAGTAGCCCTGCTGGTATTTGCAGTTTCATGATCAAAAGGCAAAAGAGGTTTGGAAAGGTTTTCAAGACCAGAGTGCTAGGAAGACTGATGGTGTTCATGACGGGGAGCGACGCTGCCAAGATTTTACTAACGGGGAAGGATGGTATGGTAAGCTTAAACCTGTTCTACACCGGCAAGCAAGTTCTCGGTCGGAGCAGCTTGCTTCAGACCAATGGCGAAGCCCACAAGAGGCTGCGACGACTGATCGGAGAACCTCTCTCACTTGATGGCTTAAGGAAATACTTTCAGTTCATCAACAATTTGGCCATTGAAACTCTAGATGAATGGTCTGGAAGAAAAATTTTTGTTCTCGATGAGGCTTCTACATTCACTCTTAAAGTTATTGGTAACATGATCATGAGCTTGGAGCCTGAAGGAGAGGAGCAAGAGAAGTTTAGAGACAATTTCAAGATAATCTCTTCTTGTTTTTCATCTTTGCCTCTTAACATCCCTGGAACTGCTTTCTATCGTGGTATGAAGGCACGGAAACGAATGTTCGAGATGCTAGATTTGATCATTGCAAAGCGACGGAGCGGAGAAATTTGCCGACAGGATTTCTTGGATTCACTAATAATCAAACACAACAAAGCAGGAGGAGATAATGATGAAGAGAAACTAACTGATGCGCAATTGAAGGACAATATACTAACTCTGCTAATTGCTGGCCATGATACAACAACTGCAGCTCTCACTTGGCTTATCAAATTTCTTGGAGAAAATCCCAATGTGTTGGAGCAACTGAGAATTGAACACCAAGAAATTCAAGAAAAGAGAAAGGGAGAGAATCTCACATGGAGTGATGTTAACAACTTGCCTTATACTGCCAAAGTACTCAGTGAAACTTTGAGGAGAGCAACAATTTTACCATGGTATTCAAGAAAAGCTGCTTTGGACTTTGAAATTGGAGGATACAAGATCAAGAAAGGTTGGTCAGTAAACTTGGATGTTGTTTCCATTCACCATGATGCTAGAGTTTTTCCTGAACCCCAAAAGTTCGATCCATCAAGATTCGAGGCACCATTGAAGCCTTTCAGCTTTCTTGGGTTTGGGAGTGGACCAAGAATGTGTCCTGGAATCAACTTGGCAAAGCTGGAAATTTCAGTCTTCATCCATCACCTTGTCTGCAAATACAGATGGACATCTTTGGAAGAAGGGAATGATTCAGTGCAGCCAACTCTAGTGAGGATGCCTAAGAACAAGTATCCAATTATAGTGGAGCCATTGTGA 1407 42.0 MLVIVLLFVLLAFLFVRSWGWPKAMEEIPGNLGWPIVGESFSFISEFSSPAGICSFMIKRQKRFGKVFKTRVLGRLMVFMTGSDAAKILLTGKDGMVSLNLFYTGKQVLGRSSLLQTNGEAHKRLRRLIGEPLSLDGLRKYFQFINNLAIETLDEWSGRKIFVLDEASTFTLKVIGNMIMSLEPEGEEQEKFRDNFKIISSCFSSLPLNIPGTAFYRGMKARKRMFEMLDLIIAKRRSGEICRQDFLDSLIIKHNKAGGDNDEEKLTDAQLKDNILTLLIAGHDTTTAALTWLIKFLGENPNVLEQLRIEHQEIQEKRKGENLTWSDVNNLPYTAKVLSETLRRATILPWYSRKAALDFEIGGYKIKKGWSVNLDVVSIHHDARVFPEPQKFDPSRFEAPLKPFSFLGFGSGPRMCPGINLAKLEISVFIHHLVCKYRWTSLEEGNDSVQPTLVRMPKNKYPIIVEPL 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18327816 18332152 - PI0001195.1 Cmetu01g0289 345563

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g0289 468 PRINTS E-class P450 group I signature 416 439 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmetu01g0289 468 PRINTS E-class P450 group I signature 270 287 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmetu01g0289 468 PRINTS E-class P450 group I signature 375 399 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmetu01g0289 468 PRINTS E-class P450 group I signature 290 316 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmetu01g0289 468 PRINTS E-class P450 group I signature 61 80 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmetu01g0289 468 PRINTS E-class P450 group I signature 335 353 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmetu01g0289 468 PRINTS E-class P450 group I signature 406 416 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmetu01g0289 468 FunFam Cytochrome P450 family 722 subfamily A polypeptide 1 19 468 - -
Cmetu01g0289 468 PANTHER CYTOCHROME P450 26 29 448 - -
Cmetu01g0289 468 Coils Coil 304 324 - -
Cmetu01g0289 468 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 409 418 IPR017972 GO:0005506|GO:0016705
Cmetu01g0289 468 SUPERFAMILY Cytochrome P450 23 467 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmetu01g0289 468 Gene3D Cytochrome P450 22 467 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmetu01g0289 468 Pfam Cytochrome P450 29 459 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmetu01g0289 468 CDD CYP90-like 60 467 - -
Cmetu01g0289 468 PRINTS P450 superfamily signature 281 298 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmetu01g0289 468 PRINTS P450 superfamily signature 416 427 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmetu01g0289 468 PRINTS P450 superfamily signature 407 416 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmetu01g0289 468 PRINTS P450 superfamily signature 336 347 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g0289 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g0289 Cmetu-Chr1:18327816 Cmetu07g1305 Cmetu-Chr7:5815067 3.60E-79 dispersed
Cmetu03g0864 Cmetu-Chr3:1957161 Cmetu01g0289 Cmetu-Chr1:18327816 1.10E-69 transposed
Cmetu08g0224 Cmetu-Chr8:21818605 Cmetu01g0289 Cmetu-Chr1:18327816 5.20E-81 transposed
Cmetu01g2292 Cmetu-Chr1:9703472 Cmetu01g0289 Cmetu-Chr1:18327816 1.60E-08 wgd
Cmetu01g0289 Cmetu-Chr1:18327816 Cmetu02g1354 Cmetu-Chr2:8105939 2.50E-48 wgd
Cmetu01g0289 Cmetu-Chr1:18327816 Cmetu06g0086 Cmetu-Chr6:22131152 4.90E-20 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g152 . . . Bda03g00302 . Bpe04g00264 Bma04g00266 . . . . Cma09g00081 . . . Cpe06g00045 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed10g2110 . Cmo09g00080 . . . Car09g00070 . . Bhi09g01887 Tan01g3346 Cmetu01g0289 . . . . . . . . . . . . . . .
Vvi19g494 . . Bda07g00357 Bda09g00396 . . . . . . . Cma09g00945 . Car09g00859 Sed10g2110 Cpe06g00761 . Bhi09g01887 Tan01g3346 Cmetu01g0289 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo09g00944 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012720 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 27