Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g0301 ATGGAGAGTGGAGCAGAGCCACTGGCGGTGGACCATGACAAATGGCGACTCTACGAAGCTTACAATGAGCTTCACGGCCTCGCTCAGGAGTTCCACACTCCTTTCGACGCTCCGGCAGTGCTCGTGGTCGGCCACCAAACCGATGGCAAAAGCGCCTTGGTTGAAGCTCTCATGGGCTTCCAATTCAACCACGTCGGTGGCGGAACCAAGACTCGCCGACCTATTACTCTTCACATGAAGTACGACCCCGACTGCGAAACTCCCGTCTGTCATCTTGTCTCCGATGACGACCCCACTGCCGCCATCCAAAAATCTCTCCACGAAATTCAGGTTTTGTTGGTTGCTCACAAAGCTTTGGCTATTAACCCCCCGATTTGCATTATTGAAGCTGAAAATATGAGGTTGGAGAGTGAAACGAGTCAATTCTCGGCCAAGGAAATAATTATTAAAGTGGAGTATAAGTATTGCCCTAATCTTACGATTATTGACACTCCTGGGCTCATTGCTCCAGCCCCAGGTCGAAAGAATCGGGTGTTGCAGGCTCAAGCTCGTGCAGTCGAGTCACTAGTACGAGCTAAAATGCAGCACAGAGAGTTCATCATATTGTGTCTTGAAGATTGTAGTGACTGGAGTAATGCGACTACCCGAAGGGTCGTAATGCAAATTGATCCTGAACTCTCAAGGACTGTGATTGTATCAACCAAACTTGATACCAAGATACCCCAATTTGCTCGTTCTTCAGATGTGGAAGTCTTTCTTTTGCCACCCTCTTGTGCACTTGATGGCATCATATTGGGGGACTCTCCATTTTCACATCTGTTCCTTCAGGCAGAGTTGGCTATAGCTTTGAGAGAGAAGGAAGACATTATCCTTTTGGAGGAAAAGTTATGCCGACCTTTGGCGGAGAAAGAAAAAGTGAGAATTGGTGTAAGCAAATTGAGAACGTTCTTAGAAGAACTGCTACAGAAAAGGTATATGGATAGCGTGCCCTTGATCATTTCACTTCTTGATAAGGAGTACAGGAGCACAACTCGAAAACTGAATGAGATTGATCAAGAACTCAGTAATTTGGACGAAGTAACATTGAAGGAGAAAGGAAGAGCATTTCACGACTTGTTTTTGACCAAGTTATCTTTGCTATTAAAAGGAACAGTTGTTGCTCCTCCAGATAAATTTGGTGAAACACTTCAAGATGAAAGAATCAATGGAGGGGCTTTTGTTGGTACCGATGGTCTTCAATTTCCACAGAAACTAATCCCGAATGCAGGCATGCGTTTATATGGTGGTGCACAATATCATCGTGCTATGTGTCCTCCAATTACAAGGGAAGAAATTGTAAATGCATGTGGAGTTGAGGATATACATGATGGAGCAAACTACTCTAGAACGGCTTGTGTAATAGCTGTGGCCAAGGCTCGAGATACCTTTGAACCATATCTTCATCAGTTGGGCTGTAGACTATTGCACATTTTGAAGAGACTGCTTCCCATTTCTGTCTACCTTCTTCAGAAAGATGGGGAGTATTTAAGTGGTCACCAGGTGTTTCTTAACCGTGTTTCTTCTGCCTTCAACAACTTTGCTGAATCTACTGAGAAGGCATGCCGTGAAAAATGCATGGAAGATTTAGTGAGCACTACCCGCTACGTCTCATGGTCGCTTCACAATAAGAATCGATCAGGGCTACGCCACTTCCTAGACTCATTTTGTGGAAATGATCAGTCCATCATGGGAGGGAATTTGGCATCTAGTGGCCTTTCTCAAGATTCAACTTTTGGATCTCTTAGCAATGAGCGGCAAGACAATAAACCTAGGCCAGATGTAAAGCTCAGTCAATTGGCATCAGGAATCGACTCCAGCTCTTGTATTCAGGGAACAGAAGCAAGGCTAGTTGATCTCTTAGATTGCACGCTTTGGAACAGAAGGCTTGCTCCTTCATCTGAAAGAATTGTTCATGCTCTAGTACAGCAGATATTCCATGGAATTAGAGAATATTTCTTGGCTTCTGCAGAACTAAAGTTCAACTGTTTTCTTCTAATGCCAGTAGTGGACAAGTTGCCAGCACTACTTCGCGAGGACTTAGAGTCTGCTTTTGAAAATGAATTGGATAATGTTTTTGACATTACGAATTTGGTACACTCCTTGAGCCAGCGAAAGCGCGATGCTGAGGTTGAACTGAGAAGGATTAAGAGGCTCAAGGAGAAGTTTAGAGTGGTACATCAGCAGCTCATACTGCAACAATCCAAGCCTGAAATGAAAACTGAAGAAGGTGATACGAAATGA 2280 44.3 MESGAEPLAVDHDKWRLYEAYNELHGLAQEFHTPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYDPDCETPVCHLVSDDDPTAAIQKSLHEIQVLLVAHKALAINPPICIIEAENMRLESETSQFSAKEIIIKVEYKYCPNLTIIDTPGLIAPAPGRKNRVLQAQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELSRTVIVSTKLDTKIPQFARSSDVEVFLLPPSCALDGIILGDSPFSHLFLQAELAIALREKEDIILLEEKLCRPLAEKEKVRIGVSKLRTFLEELLQKRYMDSVPLIISLLDKEYRSTTRKLNEIDQELSNLDEVTLKEKGRAFHDLFLTKLSLLLKGTVVAPPDKFGETLQDERINGGAFVGTDGLQFPQKLIPNAGMRLYGGAQYHRAMCPPITREEIVNACGVEDIHDGANYSRTACVIAVAKARDTFEPYLHQLGCRLLHILKRLLPISVYLLQKDGEYLSGHQVFLNRVSSAFNNFAESTEKACREKCMEDLVSTTRYVSWSLHNKNRSGLRHFLDSFCGNDQSIMGGNLASSGLSQDSTFGSLSNERQDNKPRPDVKLSQLASGIDSSSCIQGTEARLVDLLDCTLWNRRLAPSSERIVHALVQQIFHGIREYFLASAELKFNCFLLMPVVDKLPALLREDLESAFENELDNVFDITNLVHSLSQRKRDAEVELRRIKRLKEKFRVVHQQLILQQSKPEMKTEEGDTK 759
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2283139 2296446 + PI0008034.1 Cmetu01g0301 345575

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g0301 759 Gene3D - 16 380 IPR027417 -
Cmetu01g0301 759 SMART dynamin_3 12 267 IPR001401 GO:0003924|GO:0005525
Cmetu01g0301 759 Pfam Dynamin family 40 235 IPR045063 -
Cmetu01g0301 759 Coils Coil 333 360 - -
Cmetu01g0301 759 PANTHER DYNAMIN 17 736 IPR022812 -
Cmetu01g0301 759 CDD DLP_1 35 330 IPR001401 GO:0003924|GO:0005525
Cmetu01g0301 759 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 338 IPR027417 -
Cmetu01g0301 759 PRINTS Dynamin signature 62 79 IPR022812 -
Cmetu01g0301 759 PRINTS Dynamin signature 37 55 IPR022812 -
Cmetu01g0301 759 PRINTS Dynamin signature 153 170 IPR022812 -
Cmetu01g0301 759 PRINTS Dynamin signature 224 240 IPR022812 -
Cmetu01g0301 759 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 34 330 IPR030381 GO:0005525
Cmetu01g0301 759 MobiDBLite consensus disorder prediction 589 608 - -
Cmetu01g0301 759 Coils Coil 711 734 - -
Cmetu01g0301 759 FunFam Dynamin-like protein ARC5 15 382 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g0301 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g0301 Cmetu-Chr1:2283139 Cmetu07g0003 Cmetu-Chr7:22010080 6.10E-44 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g204 . Blo03g01548 . . . Bpe08g01021 . . . . . . . . Sed06g0329 . Cpe02g00700 Bhi09g03433 Tan01g4390 Cmetu01g0301 . Hepe01g1389 Mch11g1066 . Cla11g01759 Cam11g1826 Cec11g1846 Cco11g1853 Clacu11g1986 . Cre11g2203 Cone6ag0150 Cone9ag0176 . . Lsi04g02069 Csa04g02340 Chy07g00071 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009630 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 3 1 1 33