Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g0333 ATGGATACGCTCAAGAAATCTTTCAAAGGCAATGTATCTTTCAAGCATACAAGGAAGATTTCTGCTGGAGGAGTCGGCAGCGAAATCAATCACGAAGAGCTCCCCATTCTTCTCAATCACCAACCTACGGAGGATCATCGTCTTTGTCTTAGGGATCATCATCCGATGAACGATTCTGATCCATCTGACCGAACAGAGGTCATTCTCAAGATTGATGATGGTGGTTCTTCCGCTGTCTCCAGATCTCTGGACTCTGCTGGCAATAATGGCGGGAAGGTTTGGCGGGAATCCAGGTACGATTTCTGGAACAATGATGAAATTGGAATTGGGGAAAGTGCGAGTAGGGTTAGTGGTGTTGATAGAAATGAGGGATTTGAATTTGTACAGACTGGTTATGGAATGGAGGATCCACCTACGAAGCTGATTGGTGAGTTTCTTCATAAGCAGAAAATTAGGGGAGAAACGACTTTGGATATGGATTTGGAAATGGAGGAATTGAAGCCTAATAGGATTATACCTCCATTGGCAGAGTCGCCATTGAGTCAAACTTCTAAGGATCTTAAAGTTTCGTTTCAGCAGGATTCGGCAGAAATTTCGAGCAATGATCAGTCAATGAGAAAGCGGTATAGAGATTCTCATGATTTTCAAGAAGAGTTTAAAGGAGGACAACCGCCATGGCAACAATCGCACCATGAACGTCTTGGATCTCCAACTATCCCTAGGGTTCAAAATGAGTCTCTTGCTGAGGCTATGAGATGCGCATCTAACTTGTCTTTTCATAGTGAGCTTTCGTTTCAAAGGAAGTCTAATTTACTGAGGGCGAAAACCAAGTCAAGATTGATAGACCCACCTGCCGAGCCTGACCGGCTCTCTGGCCTCATTCCTAAGTCAGGTCAACTACGATCTGGGTTTCTGGGCAAGATTGAAGACGACGATGATGACCCCTTTCTAGAGGATGACCTTCCAGACGATTTTAAAAGGGGAAATTTCAGTGCTCTAACTGTTCTACAATGGGTTAGTTTGATTCTAATCACTGCAGCTTTAATCTGCACTCTTTCTGTTCCTTATTTGAGGGAAAAGAGTCTATGGGAGTTGGATATGTGGAAATGGGAGGTGATGATTTTGATACTGATTTGTGGACGATTGGTATCTGGTTGGGGGATTAGGATTGCTGTATTTTTCATTGAGAGGAATTTTCTTTTGCGTAAAAGGGTTCTGTATTTTGTATATGGGGTTAGAAAACCAGTGCAGAATTGTTTATGGTTAGGCCTTGTTCTGATCGCTTGGCATTTGTTGTTCAATAAACGGGTTGAGAAACAAACCAACACTAGTATACTCAATTATGTGAGGAGAGTTTTAGTTTGTCTCTTGATAAGCACACTGATATGGCTTGTGAAAACCTTGATGGTGAAGGTGCTTGCCTCTTCTTTCCATGTAAGCACATACTTCGATCGAATTCAAGAATCGTTGTTTAATCAATATGTCATCGAGACGCTCTCGGGGCCACCTCTGGTTGAAATACGGAAGAATGAGGAAGAAGAGGAGAGGATTGCAGATGAAGTCCAAAAATTACAAAATGCAGGAATTACCATACCCCCTGATCTCAAGGCAGCAACCTTTGCTTCTATAAAGAGTGGAAGGGGAATAGGTAGTGGACGGACCCACAAAAGTTTTTGTGCAAAAAGTTCCAAATTCTCTCGAGCACTGACCAAAAATGGGAATGATGGAATAACGATTGACCACTTGCACAAACTGAGTCCGAAGAACGTGTCTGCCTGGAATATGAAGAGGTTGTTGAACATAGTTCGATATGGTAGTATTTCCACACTGGATGAGCAGATACGGGGGCCGTGTCTTGATGACGAATCTACTACAGAGATCAAAAGTGAACGTGAGGCAAAGGCTGCAGCAAAAAAGATTTTTCAGAATGTGGCTCGTCGTGGATATAAGTACATATACCTGGATGACTTAATGCGGTTCATGAGAGAAGACGAGGTTCTTAAAACGATGAGTCTCTTTGAAGGAGCCGCTGAAAACCAGAGGATAAGCAAATCGGCCTTGAAAAATTGGGTGGTCAATGCCTTCAGGGAACGAAGAGCCCTTGCTTTAACACTGAATGATACCAAAACAGCTGTGGATAAACTACACCACATGGTGAATGTCATATTCGGCATCCTTATATTAATTTTATGGCTTATAGTATTAGGAATTGCCTCCAGCAAATTTTTCATCTTCCTTAGTTCTCAAATAGTGGTTGTGGCATTTATTTTTGGAAACACTTGCAAAACCATATTTGAAGCAATCATCTTTTTGTTTGTCATGCATCCATTTGACGTTGGAGATCGCTGTGAAATCGATGGAATGCAGATGGTTGTAGAGGAAATGAACATCTTGACTACTGTATTCTTGAGACACGACAACTTGAAGATCATAATCCCAAATAGTGTTCTTGCCACCAAATTAATCCACAACTTCTACCGTAGTCCTGACATGGGCGAAACGGTTGAATTCCTTGTCCATATCGCTACACCAGCTGAGAAAATTACGGCCATGAAACAGAGAATTATAAGTTACATTGAAGGCAACAAAGAACATTGGTGTCCTGCCCCTGTGATTGTGTTCAAGGATATCGATGGTTTAAACAAGCTCAAATTGGCAGTTTGGTTGTCACACAGAATGAACCATCAAGACTCGGGGGAAAGATGGGCTCGGAGGTCCGTCTTGGTCGAAGAAGTTGTTAAAGTCTGTCAAGAGCTCGACATTCAATACCGTCTATTGCCAATCGATATCAATATCCGTTCATTGCCTTCTTCTGCACCCTCCATTGGCTTTCCTTCAAATTGGACTTCCCCTGCAAGTTGA 2862 42.35 MDTLKKSFKGNVSFKHTRKISAGGVGSEINHEELPILLNHQPTEDHRLCLRDHHPMNDSDPSDRTEVILKIDDGGSSAVSRSLDSAGNNGGKVWRESRYDFWNNDEIGIGESASRVSGVDRNEGFEFVQTGYGMEDPPTKLIGEFLHKQKIRGETTLDMDLEMEELKPNRIIPPLAESPLSQTSKDLKVSFQQDSAEISSNDQSMRKRYRDSHDFQEEFKGGQPPWQQSHHERLGSPTIPRVQNESLAEAMRCASNLSFHSELSFQRKSNLLRAKTKSRLIDPPAEPDRLSGLIPKSGQLRSGFLGKIEDDDDDPFLEDDLPDDFKRGNFSALTVLQWVSLILITAALICTLSVPYLREKSLWELDMWKWEVMILILICGRLVSGWGIRIAVFFIERNFLLRKRVLYFVYGVRKPVQNCLWLGLVLIAWHLLFNKRVEKQTNTSILNYVRRVLVCLLISTLIWLVKTLMVKVLASSFHVSTYFDRIQESLFNQYVIETLSGPPLVEIRKNEEEEERIADEVQKLQNAGITIPPDLKAATFASIKSGRGIGSGRTHKSFCAKSSKFSRALTKNGNDGITIDHLHKLSPKNVSAWNMKRLLNIVRYGSISTLDEQIRGPCLDDESTTEIKSEREAKAAAKKIFQNVARRGYKYIYLDDLMRFMREDEVLKTMSLFEGAAENQRISKSALKNWVVNAFRERRALALTLNDTKTAVDKLHHMVNVIFGILILILWLIVLGIASSKFFIFLSSQIVVVAFIFGNTCKTIFEAIIFLFVMHPFDVGDRCEIDGMQMVVEEMNILTTVFLRHDNLKIIIPNSVLATKLIHNFYRSPDMGETVEFLVHIATPAEKITAMKQRIISYIEGNKEHWCPAPVIVFKDIDGLNKLKLAVWLSHRMNHQDSGERWARRSVLVEEVVKVCQELDIQYRLLPIDINIRSLPSSAPSIGFPSNWTSPAS 953
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4992176 4996924 + PI0018293.1 Cmetu01g0333 345607

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g0333 953 MobiDBLite consensus disorder prediction 201 218 - -
Cmetu01g0333 953 Coils Coil 507 527 - -
Cmetu01g0333 953 SUPERFAMILY Sm-like ribonucleoproteins 766 825 IPR010920 -
Cmetu01g0333 953 PIRSF Memb_At2g17000 53 953 IPR016688 -
Cmetu01g0333 953 MobiDBLite consensus disorder prediction 191 232 - -
Cmetu01g0333 953 Gene3D - 776 825 IPR023408 -
Cmetu01g0333 953 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 54 947 IPR016688 -
Cmetu01g0333 953 FunFam Predicted mechanosensitive ion channel 776 825 - -
Cmetu01g0333 953 Pfam Mechanosensitive ion channel 718 922 IPR006685 GO:0016020|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g0333 K22048 - - csv:101207426 1712.97
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g0333 Cmetu-Chr1:4992176 Cmetu02g0585 Cmetu-Chr2:2471372 2.20E-144 dispersed
Cmetu01g0333 Cmetu-Chr1:4992176 Cmetu11g1342 Cmetu-Chr11:11637438 0.00E+00 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g216 . Blo15g00394 Bda06g00468 . Bpe07g00704 . . Bma12g00910 . Cmo11g01757 . . . . Sed01g2461 . . Bhi05g01669 Tan02g0642 Cmetu01g0333 . . . . Cla02g00401 Cam02g0406 Cec02g0406 Cco02g0422 Clacu02g0409 Cmu02g0405 Cre02g0740 Cone12ag1250 . Cone3ag0976 Cone10ag1228 Lsi10g00810 . . Cme01g01219 . . . . Bpe15g00798 . . . . . . Cma11g01360 . . . Cpe16g00335 . . . . . . . . . . . . . . . . . Chy01g00654 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu06g0130 . 129 519 Mechanosensitive Ion Channel Family AT4G00290 66.2 7.5e-152 534.3
Cmetu06g1028 . 62 729 Mechanosensitive Ion Channel Family AT5G10490 58.2 2.0e-192 669.5
Cmetu03g1755 . 10 668 Mechanosensitive Ion Channel Family AT5G10490 54.4 2.6e-179 625.9
Cmetu03g1755 . 10 648 Mechanosensitive Ion Channel Family AT1G58200 53.4 3.6e-181 632.1
Cmetu06g1028 . 34 700 Mechanosensitive Ion Channel Family AT1G58200 52.8 1.5e-174 610.1
Cmetu11g1342 . 43 883 Mechanosensitive Ion Channel Family AT1G53470 56.1 1.8e-249 859.4
Cmetu01g0333 . 92 953 Mechanosensitive Ion Channel Family AT1G53470 51.0 1.0e-239 827.0
Cmetu11g1342 . 43 884 Mechanosensitive Ion Channel Family AT3G14810 53.1 5.8e-237 817.8
Cmetu01g0333 . 60 953 Mechanosensitive Ion Channel Family AT1G78610 55.4 5.1e-273 937.6
Cmetu11g1342 . 43 883 Mechanosensitive Ion Channel Family AT1G78610 59.3 9.9e-269 923.3
Cmetu11g1342 . 217 891 Mechanosensitive Ion Channel Family AT2G17000 61.0 5.1e-225 778.1
Cmetu01g0333 . 267 941 Mechanosensitive Ion Channel Family AT2G17000 58.7 2.4e-222 769.2
Cmetu11g1342 . 1 668 Mechanosensitive Ion Channel Family AT2G17010 50.2 6.1e-165 578.2
Cmetu02g0585 . 59 751 Mechanosensitive Ion Channel Family AT5G12080 52.4 9.0e-194 674.1
Cmetu07g1894 . 72 703 Mechanosensitive Ion Channel Family AT5G12080 52.3 4.1e-178 622.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001937 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 5 2 2 2 2 2 2 2 3 2 5 3 1 67