Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g0347 ATGGCAAGCAAAAGCAAGATCCTAATTGTTGGAGGCACTGGCTATATTGGCAAGTTCATTGTGGAGGCGAGTGCTAAGGCTGGAAATCCCACATATGCTCTTGTTCGAGATTCTACTCTTTCTGATCCTGCAAAGTCTCAAATTATCAATAATTTCAAGAACTTAGGAGTCAAATTAGTCTCTGGTGATCTCTACAATCACAACAGTTTGGTTAAGGCCATAAAAGAGGTGGATGTTGTAATTTCCACTGTTGGTGCTGGTCAATTAGCAGATCAAGAGAAGCTCATTGCTGCCATTAAAGAAGCTGGCAATGTTAAGGTCATCATCATATATAAAATCAGCTTTTACTGTAAAGGTTCAAATCCGTCGAGCTGTGGAGGCTGCAAAATTCCTTACACTTATGTTTCTTCCAATTTTTTTGCCAGTTACTTCCTTCCTAGTTTGTCGCAACCAGGAGCCACCACCCCACCAAGAGATAAAGTTGTTATCTTAGGAGATGGAAATCCCAAATCTATCTTCAACAAGGAAGATGACATTGGAACTTACACTATCAAAGCTGTGGATGATCCAAGAACTTTGAACAAAACTCTCTACATTAGGCCTTCTGGTAACACCTACTCTTTCAATGATCTTGTGTCTCTTTGGGAGAAAAAAATTGGAAAAAAACTTGAAAGAATCTATGTTCCAGAAGAACAAGTGTTGAAGAACATCCAAGAGGCTCCATTTCCGATGAACATAATAATATCAATTTCTCACTCAGCATTTGTGAAGGGAGATCATACCAACTTTGATATTGAGGCATCATTTGGAGTGGAAGCCACACAATTGTATCCAGATGTTAAATACACAACTGTGGATGAATTCCTCAATCAATTTGTTTGA 882 38.78 MASKSKILIVGGTGYIGKFIVEASAKAGNPTYALVRDSTLSDPAKSQIINNFKNLGVKLVSGDLYNHNSLVKAIKEVDVVISTVGAGQLADQEKLIAAIKEAGNVKVIIIYKISFYCKGSNPSSCGGCKIPYTYVSSNFFASYFLPSLSQPGATTPPRDKVVILGDGNPKSIFNKEDDIGTYTIKAVDDPRTLNKTLYIRPSGNTYSFNDLVSLWEKKIGKKLERIYVPEEQVLKNIQEAPFPMNIIISISHSAFVKGDHTNFDIEASFGVEATQLYPDVKYTTVDEFLNQFV 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1172755 1174904 - PI0026075.1 Cmetu01g0347 345621

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g0347 293 CDD PCBER_SDR_a 6 288 IPR045312 GO:0016491
Cmetu01g0347 293 PANTHER PINORESINOL REDUCTASE-RELATED 129 293 - -
Cmetu01g0347 293 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 259 IPR036291 -
Cmetu01g0347 293 Gene3D - 6 106 - -
Cmetu01g0347 293 Pfam NmrA-like family 7 109 IPR008030 -
Cmetu01g0347 293 Pfam NmrA-like family 129 283 IPR008030 -
Cmetu01g0347 293 Gene3D - 137 289 - -
Cmetu01g0347 293 Gene3D - 129 277 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g0347 K23050 - - csv:101212294 511.916
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g0347 Cmetu-Chr1:1172755 Cmetu01g1021 Cmetu-Chr1:5974925 1.90E-123 dispersed
Cmetu01g0347 Cmetu-Chr1:1172755 Cmetu03g1149 Cmetu-Chr3:1901439 6.10E-109 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g371 . . . . . . Bma05g00447 . . . . . . . Sed11g1039 . . Bhi05g01241 Tan02g1978 Cmetu01g0347 . . . . . . . . . . . . . . . Lsi10g00376 . . . . . . . . . . . . . . . . . . . Cpe05g01264 Bhi10g01998 Tan05g1296 . . . . . . . . . . . . . Csa02g01265 . Cme11g00121
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000111 5 10 6 7 3 10 5 11 9 7 10 9 5 7 11 5 9 5 6 10 8 9 7 8 12 9 8 7 9 7 234