Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g0408 ATGGGCTCTGCTTCAGTTGTTGATTTAATAGAAGCCTCCTCTGGCGTGCATTTTTCTGGACGTCTTCTGGATAGAAAGCAACAAAATGGACATACAAGGAGCTTGATCTCAGAAACTGAAAATTTTTACAAACAACCTTTTGTCATTGGGGTTGCTGGTGGTGCGGCCTCTGGAAAGACAACAGTTTGTGATATGATCATTCATCAACTTCATGACCAGCGAGTCGTTCTTGTTAACCAGGATTCTTTCTATCATAATTTAACTTCCGAGGAACTTATGCAAGTACATGAATACAACTTCGACCATCCCGATGCGTTTGACACAGAGGAACTTTTAAGTTCAATGGATAAATTGAGGCATGGGGAGCCTGTAGATATTCCAAAATATGACTTCAAGAGTTATAAAAATAACGTGTTTCCACCAAGAAGGGTTAACCCTTCCGATGTTATCATTTTGGAAGGCATTCTTGTTTTCCATGACCCTCGCGTTCGAGAACTGATGAATATGAAGATATTTGTTGATACAGATGCTGATGTTCGTTTGGCAAGAAGGATAAGGCGTGATACTGTGGAGAAGGCTAGAGACATAGCTGCAGTTCTTGATCAGTATTCAAAATTTGTGAAGCCTGCTTTTGATGATTTCATACTTCCTACAAAGAAGTATGCTGATATCATCATTCCCAGAGGAGGCGATAATCACGTAGCCATTGATTTAATTGTACAACATATTCGCACAAAGCTTGGTCAGCACGATCTTTGTAAAATATACCCTAATTTATATGTTATCCAGTCAACCTTTCAGATACGAGGCATGCATACATTGATACGAGATGCTAAAACTACAAAGCATGATTTTGTGTTCTATGCTGACCGATTGATTCGGCTGGTTGTTGAGCATGGTCTGGGACATTTACCATTCACAGAAAAGCAGGTGACCACTCCAACTGGATCTGTATATAGTGGTGTTGATTTCTGCAAGAGGTTATGTGGTGTCTCTGTCATCAGGAGTGGCGAGAGTATGGAAAATGCTTTACGGGCATGTTGTAAAGGCATTAAAATTGGAAAGATTCTCATTCATAGGGAAGGTGACAATGGCCAACAGTTAATTTATGAAAAACTACCCTCGGATATCTCCAATAGGCATGTTTTACTATTGGATCCCATCCTAGGCACAGGAAACTCGGCAGTGCAAGCCATTTCTTTGCTCATAAGTAAGGGTGTTCCAGAGCCTAATATTATCTTTCTCAATCTCATATCAGCACCTCAAGGCGTACATGTGGTGTGCAAACGTTTTCCAAGAATAAAGATTGTGACATCTGAAATTGAGATCGGTTTGAATCAAGATTTTCGAGTGGTGCCTGGTATGGGTGAGTTTGGGGACCGGTATTTTGGAACTGACGATGAAGAACAAGTGAGGCCTCTCCACAATAGATTATTAGAGGTATATAAATTTTGA 1455 40.34 MGSASVVDLIEASSGVHFSGRLLDRKQQNGHTRSLISETENFYKQPFVIGVAGGAASGKTTVCDMIIHQLHDQRVVLVNQDSFYHNLTSEELMQVHEYNFDHPDAFDTEELLSSMDKLRHGEPVDIPKYDFKSYKNNVFPPRRVNPSDVIILEGILVFHDPRVRELMNMKIFVDTDADVRLARRIRRDTVEKARDIAAVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIQSTFQIRGMHTLIRDAKTTKHDFVFYADRLIRLVVEHGLGHLPFTEKQVTTPTGSVYSGVDFCKRLCGVSVIRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPSDISNRHVLLLDPILGTGNSAVQAISLLISKGVPEPNIIFLNLISAPQGVHVVCKRFPRIKIVTSEIEIGLNQDFRVVPGMGEFGDRYFGTDDEEQVRPLHNRLLEVYKF 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9837635 9845443 + PI0009064.1 Cmetu01g0408 345682

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g0408 484 Pfam Uracil phosphoribosyltransferase 264 465 - -
Cmetu01g0408 484 CDD UMPK 48 246 IPR000764 -
Cmetu01g0408 484 Pfam Phosphoribulokinase / Uridine kinase family 48 234 IPR006083 GO:0005524|GO:0016301
Cmetu01g0408 484 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 239 IPR027417 -
Cmetu01g0408 484 FunFam Uridine kinase 43 249 - -
Cmetu01g0408 484 Gene3D - 43 249 IPR027417 -
Cmetu01g0408 484 CDD PRTases_typeI 323 438 IPR000836 -
Cmetu01g0408 484 PRINTS Uridine kinase signature 76 87 - -
Cmetu01g0408 484 PRINTS Uridine kinase signature 214 227 - -
Cmetu01g0408 484 PRINTS Uridine kinase signature 121 136 - -
Cmetu01g0408 484 PRINTS Uridine kinase signature 178 188 - -
Cmetu01g0408 484 PRINTS Uridine kinase signature 192 203 - -
Cmetu01g0408 484 PRINTS Uridine kinase signature 46 63 - -
Cmetu01g0408 484 NCBIfam uridine kinase 45 246 IPR000764 -
Cmetu01g0408 484 Gene3D - 250 465 IPR029057 -
Cmetu01g0408 484 PANTHER URIDINE KINASE 38 376 - -
Cmetu01g0408 484 FunFam Uridine kinase 250 465 - -
Cmetu01g0408 484 SUPERFAMILY PRTase-like 249 466 IPR029057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g0408 K00876 - - csv:101219714 945.266
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g0408 Cmetu-Chr1:9837635 Cmetu06g0579 Cmetu-Chr6:16813935 7.20E-208 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu03g1736 . 33 189 PRT Gene Family AT1G80050 78.3 4.6e-66 247.7
Cmetu06g2098 . 32 182 PRT Gene Family AT1G80050 77.5 2.5e-64 241.9
Cmetu09g1236 . 30 189 PRT Gene Family AT1G80050 68.1 7.8e-58 220.3
Cmetu03g0036 . 105 254 PRT Gene Family AT1G80050 70.7 9.5e-56 213.4
Cmetu03g1736 . 1 148 PRT Gene Family AT5G11160 79.7 8.4e-63 236.9
Cmetu09g1236 . 8 145 PRT Gene Family AT5G11160 76.1 1.7e-55 212.6
Cmetu06g2098 . 10 147 PRT Gene Family AT5G11160 74.6 1.1e-54 209.9
Cmetu03g0036 . 81 220 PRT Gene Family AT5G11160 72.9 1.1e-54 209.9
Cmetu03g0036 . 76 256 PRT Gene Family AT1G27450 82.9 2.6e-81 298.5
Cmetu06g2098 . 6 182 PRT Gene Family AT1G27450 75.7 8.9e-74 273.5
Cmetu09g1236 . 7 165 PRT Gene Family AT1G27450 76.1 1.2e-67 253.1
Cmetu03g1736 . 11 183 PRT Gene Family AT1G27450 68.8 4.0e-66 248.1
Cmetu11g1361 . 68 558 PRT Gene Family AT2G16570 84.4 4.4e-241 830.9
Cmetu11g1361 . 73 558 PRT Gene Family AT4G34740 85.4 1.2e-241 832.8
Cmetu11g1361 . 30 531 PRT Gene Family AT4G38880 70.9 8.8e-199 690.3
Cmetu03g0036 . 76 256 PRT Gene Family AT1G27450 82.9 2.6e-81 298.5
Cmetu06g2098 . 6 182 PRT Gene Family AT1G27450 75.7 8.9e-74 273.5
Cmetu09g1236 . 7 165 PRT Gene Family AT1G27450 76.1 1.2e-67 253.1
Cmetu03g1736 . 11 183 PRT Gene Family AT1G27450 68.8 4.0e-66 248.1
Cmetu03g1736 . 33 189 PRT Gene Family AT1G80050 78.3 4.6e-66 247.7
Cmetu06g2098 . 32 182 PRT Gene Family AT1G80050 77.5 2.5e-64 241.9
Cmetu09g1236 . 30 189 PRT Gene Family AT1G80050 68.1 7.8e-58 220.3
Cmetu03g0036 . 105 254 PRT Gene Family AT1G80050 70.7 9.5e-56 213.4
Cmetu06g2098 . 6 99 PRT Gene Family AT4G22570 88.3 1.9e-44 175.3
Cmetu09g1236 . 6 104 PRT Gene Family AT4G22570 81.8 7.2e-44 173.3
Cmetu03g0036 . 80 172 PRT Gene Family AT4G22570 80.6 1.8e-39 158.7
Cmetu03g1736 . 11 100 PRT Gene Family AT4G22570 77.8 5.0e-37 150.6
Cmetu06g2098 . 7 98 PRT Gene Family AT4G12440 88.0 2.3e-41 164.9
Cmetu09g1236 . 1 96 PRT Gene Family AT4G12440 83.3 1.2e-40 162.5
Cmetu03g0036 . 76 171 PRT Gene Family AT4G12440 79.2 5.4e-38 153.7
Cmetu03g1736 . 1 148 PRT Gene Family AT5G11160 79.7 8.4e-63 236.9
Cmetu09g1236 . 8 145 PRT Gene Family AT5G11160 76.1 1.7e-55 212.6
Cmetu06g2098 . 10 147 PRT Gene Family AT5G11160 74.6 1.1e-54 209.9
Cmetu03g0036 . 81 220 PRT Gene Family AT5G11160 72.9 1.1e-54 209.9
Cmetu03g0725 . 1 186 PRT Gene Family AT1G71750 64.0 4.6e-68 254.6
Cmetu01g0408 . 16 468 PRT Gene Family AT1G55810 85.4 2.7e-225 778.1
Cmetu06g0579 . 19 482 PRT Gene Family AT1G55810 73.3 3.3e-199 691.4
Cmetu01g0408 . 65 467 PRT Gene Family AT3G27440 77.2 1.7e-184 642.5
Cmetu06g0579 . 80 482 PRT Gene Family AT3G27440 75.4 9.4e-180 626.7
Cmetu06g0579 . 1 482 PRT Gene Family AT3G27190 86.3 2.7e-247 851.3
Cmetu01g0408 . 3 467 PRT Gene Family AT3G27190 74.2 1.6e-207 719.2
Cmetu08g1944 . 3 273 PRT Gene Family AT3G53900 57.2 7.1e-81 297.7
Cmetu01g0408 . 1 468 PRT Gene Family AT4G26510 84.5 5.3e-232 800.4
Cmetu06g0579 . 11 482 PRT Gene Family AT4G26510 75.2 2.2e-209 725.3
Cmetu06g0579 . 1 482 PRT Gene Family AT5G40870 86.5 3.6e-247 850.9
Cmetu01g0408 . 3 470 PRT Gene Family AT5G40870 73.4 2.8e-207 718.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002319 3 2 2 1 2 1 2 1 1 1 1 1 3 2 2 4 1 5 2 1 2 2 1 1 1 1 1 5 3 6 61