Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g0562 ATGGGTGCCGACGGTGATTCCAGCGAGCACCGGGTTGATGGCGATGCTGAAGAAGGAGGAGTTAGTGTTACAGTTAACATTCGATGTTCTAATGGGTCGAAATTTTCCGTGACGACGAGTCTGGACTCTACCGTTGCGACATTCAAATCAATTCTTGCTCAGAATTGTGATATTCCAGCTGATCAGCAGCGCTTGATCTACAAGGGTCGCATCTTAAAGGACGATCAGACCTTAGTTAGTTATGGTGTACAGGCAGATCACACTATTCACATGGTTCGTGGTTTTGCCCAAGCTTCATCAACACCTTCTGCACCTGCTTCTAATGTTAATACTAGAAGTTCTGACACTTCTCCTGGAGTCACAAGAGGTGTTGGTTCTAATGAGAGTGGTGCTTTTGGAAATGGTGGCCTTGGTGCGTCATTATTTCCTGGACTGGGTTTCAATCCTCTTGGTGGAGGTGGAGCTGGACTTCCTGAGTTTGAGCAAGTGCAACAACAGTTGACTCAGAATCCAAACATGATGAGGGAAATAATGAACATGCCTGCAATACAGAATTTGATGAATAACCCTGACTTGATGCGAACCTTAATTATGAGCAATCCTCAGATGCGGGATATTATTGACAGGAACCCAGAGCTTGCTCATATATTAAATGACCCTGGTATCCTTCGACAGACACTAGAGGCTGCAAGGAATCCTGAACTCATGAGAGAGATGATGAGAAACACTGACAGAGCAATGAGTAACATTGAATCTTCTCCAGAGGGATTTAACATGCTGAGGCGGATGTATGAAAATGTCCAGGAGCCATTTCTAAATGCAACAACAATGGCTGGAAATGCTGGAAATGATTTGAGTTCAAACCCATTTGCTGCTCTCTTGGCAAACCAAGGAGGTGCACAAGCGAGGAATGAGTCCAATAATTCTTCAACTACAGGATCAGAAACAACAGGAAATGCTGCTCCGAATACCAATCCACTTCCTAATCCCTGGGGAGGAACTCAGACCACAACCACACAGCCTACTCCAGCTGGTGATACAAGGGCTCCTGGTATTGGGGGTTTAGCAGGGGCTGGTCGTACAAATGTGGATCATTTTGCTGGTGCTGTGCCAGACCCGGCTCAGTTGAATCAGTTTCTGCAAAACCCAGCTATTTCACAGATGATGCAGAGTCTGCTCTCCAATCCTCAGTATATGAATCAAATCCTCAATCTCAACCCCCAGCTACGCAGTATGGTTGATATGAATCCTCAATTAAGAGAGATGATGCAAAATCCAGAGTTTGTTCGCCAATTAACTAATCCCGAGATGATGCAGCAAATGCTATCAATTCAGCAGACCCTCCTCTCTACCTTAAATCGACAGCCATCGTCCCAAGATGCTGCTCAAACAGGTGCTGCAGCAGGTGTTCCCAACACTGCTGGATTGGAGATGTTAATGAACCTGTTTGGTGGACTCGGTGCTGGCGGTTTGGCTGCTCCGCACAATCCCAATGTGCCCCCAGAAGAACTATATGCAACTCAACTTTCACAGCTTCAAGAGATGGGTTTCTTTGACACTCAAGAGAACATCAGAGCTCTACGTGCTACTTCCGGGAACGTCCATGCTGCTGTGGAGCGACTGCTGGGAAATCTCGGGCAGTAA 1644 46.35 MGADGDSSEHRVDGDAEEGGVSVTVNIRCSNGSKFSVTTSLDSTVATFKSILAQNCDIPADQQRLIYKGRILKDDQTLVSYGVQADHTIHMVRGFAQASSTPSAPASNVNTRSSDTSPGVTRGVGSNESGAFGNGGLGASLFPGLGFNPLGGGGAGLPEFEQVQQQLTQNPNMMREIMNMPAIQNLMNNPDLMRTLIMSNPQMRDIIDRNPELAHILNDPGILRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNAGNDLSSNPFAALLANQGGAQARNESNNSSTTGSETTGNAAPNTNPLPNPWGGTQTTTTQPTPAGDTRAPGIGGLAGAGRTNVDHFAGAVPDPAQLNQFLQNPAISQMMQSLLSNPQYMNQILNLNPQLRSMVDMNPQLREMMQNPEFVRQLTNPEMMQQMLSIQQTLLSTLNRQPSSQDAAQTGAAAGVPNTAGLEMLMNLFGGLGAGGLAAPHNPNVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGNLGQ 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4590925 4595523 + PI0025264.1 Cmetu01g0562 345836

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g0562 547 MobiDBLite consensus disorder prediction 297 354 - -
Cmetu01g0562 547 Pfam UBA/TS-N domain 505 541 IPR015940 -
Cmetu01g0562 547 Gene3D - 9 107 - -
Cmetu01g0562 547 PRINTS Ubiquitin signature 54 74 IPR019956 -
Cmetu01g0562 547 PRINTS Ubiquitin signature 75 96 IPR019956 -
Cmetu01g0562 547 SUPERFAMILY UBA-like 501 543 IPR009060 GO:0005515
Cmetu01g0562 547 SMART ubq_7 23 94 IPR000626 GO:0005515
Cmetu01g0562 547 SUPERFAMILY Ubiquitin-like 20 107 IPR029071 -
Cmetu01g0562 547 CDD UBA_PLICs 505 543 - -
Cmetu01g0562 547 Gene3D - 487 546 - -
Cmetu01g0562 547 FunFam Ubiquitin domain-containing protein DSK2b 197 253 - -
Cmetu01g0562 547 Pfam Ubiquitin family 25 92 IPR000626 GO:0005515
Cmetu01g0562 547 SMART CBM 200 239 IPR006636 -
Cmetu01g0562 547 SMART CBM 148 187 IPR006636 -
Cmetu01g0562 547 SMART CBM 363 402 IPR006636 -
Cmetu01g0562 547 SMART CBM 406 441 IPR006636 -
Cmetu01g0562 547 MobiDBLite consensus disorder prediction 99 128 - -
Cmetu01g0562 547 CDD Ubl_Dsk2p_like 23 95 - -
Cmetu01g0562 547 FunFam Ubiquitin domain-containing protein DSK2b 488 546 - -
Cmetu01g0562 547 Gene3D - 195 253 - -
Cmetu01g0562 547 ProSiteProfiles Ubiquitin domain profile. 23 92 IPR000626 GO:0005515
Cmetu01g0562 547 SMART uba_6 505 543 IPR015940 -
Cmetu01g0562 547 PANTHER UBIQUILIN 18 542 IPR015496 -
Cmetu01g0562 547 MobiDBLite consensus disorder prediction 297 345 - -
Cmetu01g0562 547 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 500 544 IPR015940 -
Cmetu01g0562 547 FunFam Ubiquitin domain-containing protein DSK2b 20 107 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g0562 K04523 - - csv:101210644 964.911
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu05g0166 Cmetu-Chr5:1848101 Cmetu01g0562 Cmetu-Chr1:4590925 1.20E-07 dispersed
Cmetu06g0998 Cmetu-Chr6:30662856 Cmetu01g0562 Cmetu-Chr1:4590925 2.00E-145 transposed
Cmetu01g0562 Cmetu-Chr1:4590925 Cmetu07g1738 Cmetu-Chr7:24332844 1.50E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g281 . . . . . Bpe12g00148 . . Cmo19g00813 Cmo11g01783 . . . . Sed05g2177 Cpe04g00628 Cpe15g00637 Bhi05g01590 Tan02g0585 Cmetu01g0562 . . . . Cla02g00354 Cam02g0363 Cec02g0364 Cco02g0371 Clacu02g0354 Cmu02g0351 . Cone12ag1271 Cone8ag1325 . . . Csa07g00180 . . Blo04g00603 Blo13g00475 . Bda14g00644 . . Bma03g00635 . . . . . Cma19g00792 Car11g01410 Car19g00609 . . . . . . . . . . . . . . . . Lsi11g01279 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005812 1 1 2 1 2 1 1 1 1 1 1 1 2 1 1 2 1 4 2 0 1 1 0 1 1 1 1 2 1 3 39