Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g0581 ATGAAATTTCTCCTTCAACGACGAAGACCCACAATCCACGACCCTAAAATTCCTTGTAGCTCGAAGTTTCATCTGCACCGTCCAACCTCATGTTGTTCGAAGTCATCTCCATCACGATCAGTTGCCATTAACCCCTTCGAATCTTCCTGGGCATGGAGATCTCTAGATCGAACGAACATAAGCTACCATTTGACTGATTATTTATGGATTAGGTCTCTTTCATCTCTCATCTCCAAAACAATATATGTTTCTTTTTTTCTACTGCCGTCTCACAAGACCTTCAGAATCAAAAAGAGCTTGGCGAAAAAGATGAGACAGGATAAGTCTATTCTTCACTGGATCCATCTTAGGACCGATAATGTCATTAGAATATCATTGGACTATTGGAGGAAAGTGCTCTAA 402 40.55 MKFLLQRRRPTIHDPKIPCSSKFHLHRPTSCCSKSSPSRSVAINPFESSWAWRSLDRTNISYHLTDYLWIRSLSSLISKTIYVSFFLLPSHKTFRIKKSLAKKMRQDKSILHWIHLRTDNVIRISLDYWRKVL 133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6274950 6276501 - PI0006063.1 Cmetu01g0581 345855

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g0581 133 Gene3D Ribosomal protein L39e 88 132 IPR023626 -
Cmetu01g0581 133 SUPERFAMILY Ribosomal protein L39e 90 129 IPR023626 -
Cmetu01g0581 133 PANTHER RIBOSOMAL PROTEIN L39E 83 123 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g0581 K02924 - - csv:101220340 64.3142
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g0581 Cmetu-Chr1:6274950 Cmetu02g0209 Cmetu-Chr2:478559 9.10E-12 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g533 . . . . . . . . . . . . . . Sed05g1725 . . Bhi04g00035 Tan02g2750 Cmetu01g0581 . Hepe10g0228 . Lcy13g1815 . . . . . . . . . . . . . . . Blo17g00008 . . . . . . Bma02g00013 . . . . . . . . . Bhi09g02973 . . . . Mch11g0521 . . . . . . . . . . . Cme07g00102