Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g0626 ATGGATTCCTTTGCTGTAAACTCAAAGAAAACACTCCATGTTCGCTCAAATAGCTTGCCCTCGAAGCCACATCCGATCGTTAATCAAGTTGATGAAAATTTATGCAGATTGAAGTCCTGTGAAGCCACTTCTTCAACTTCCTCTTTATGTCACAGACTTAGCAGCCTCCAAGATTTGCATGATTGCATTGATAAGTTACTTCTTCTACCATTCACCCAACAAACTCTTGTTAATGAGAGTGATAACAAATGGACCGATGACTTTCTAGAAGGATCTTTGATGGTCTTAGAGTTGTGTGATATTGCTAAGGATGCATTGTTGCAAACAAAAGAATGTGTACGTGAACTTGAATCGGTTTTGCGTAGAAGAAGAGGTGAAGCTGTTATTGAAAGTGATCTTCAGAAATGCTTGAGTTCTAGGAAGATGATAAAGAAGGCAGTCCACAAGGCTTTGAAAGGAATCAAAAGCAACTGTTCTCAGCAAAGTGAAGAAACTTCTGCAACCGTTAGCTTGTTAAAAGAAGTAGAGGCAGTCACATTCAGTACCGTTGAATCAGTATTCTGGTACAATCCAAAAATTGCCAACAAAGATGAAGATGCATATGAAAATGAAGTAGAAATGGTGGATGCCACTCTGTCTGCAATTGCCAGCCACAAGACCGATAAATCTGTCAACTTGCAGGACCAGCTGAGGAAATTTGAGTCAAGTATTCAAGATCTTGAAGAAGATCTTGAGAGTCTACAAAGGCATCTAATAAAAAATAGAGTCTCCCTTCTCAATATCCTAAATCACTAA 795 38.87 MDSFAVNSKKTLHVRSNSLPSKPHPIVNQVDENLCRLKSCEATSSTSSLCHRLSSLQDLHDCIDKLLLLPFTQQTLVNESDNKWTDDFLEGSLMVLELCDIAKDALLQTKECVRELESVLRRRRGEAVIESDLQKCLSSRKMIKKAVHKALKGIKSNCSQQSEETSATVSLLKEVEAVTFSTVESVFWYNPKIANKDEDAYENEVEMVDATLSAIASHKTDKSVNLQDQLRKFESSIQDLEEDLESLQRHLIKNRVSLLNILNH 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4677990 4678836 + PI0013912.1 Cmetu01g0626 345900

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g0626 264 Coils Coil 223 257 - -
Cmetu01g0626 264 PANTHER OS06G0725500 PROTEIN 9 262 - -
Cmetu01g0626 264 Pfam Protein BPS1 53 261 IPR004320 GO:0048364|GO:0048367
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g0626 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g0626 Cmetu-Chr1:4677990 Cmetu01g2011 Cmetu-Chr1:4683893 1.00E-78 dispersed
Cmetu01g0372 Cmetu-Chr1:4674539 Cmetu01g0626 Cmetu-Chr1:4677990 4.30E-96 tandem
Cmetu01g0626 Cmetu-Chr1:4677990 Cmetu01g2685 Cmetu-Chr1:4680503 9.40E-77 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g246 . . . . . . . . Cmo19g00801 . . . . . . . . Bhi05g01615 Tan02g0598 Cmetu01g0626 . . . . Cla02g00369 . . . Clacu02g0368 Cmu02g0365 Cre02g0699 . . . . . Csa07g00163 . Cme01g01172 . . . . . . . . . . . Cma11g01345 Cma19g00786 . . . . . . . . . . . . . . . . . . Lsi11g01265 . Chy01g00627 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000131 0 12 1 2 2 1 0 6 0 11 11 12 8 12 12 15 12 2 0 13 11 10 0 12 9 11 7 11 8 6 217